Abstract
A label-free colorimetric protocol based on peptide nucleic acid/silver nanoparticles (PNA/AgNPs) has been initially proposed for specific recognition of mRNA. Making use of the controlled silver nanoparticles aggregation/dispersion by PNA/PNA–RNA complex, proto-oncogene c-Myc mRNA detection can be achieved. Moreover, the PNA/AgNPs platform can undergo color change in response to target c-Myc mRNA with single-base-mismatch sensitivity, which could further help in visually identify single nucleotide differences in target genes.
摘要
摘要 PNA具有较强的银纳米聚集能力,与核酸靶标RNA形成的双链能使团聚的银纳米再次得到分散。基于该原理,本文利用纳米银和PNA构建了一种灵敏的免标记比色检测原癌基因c-myc mRNA的方法。该方法简单、快速、成本低、纳摩尔级的样品无需仪器就可以观察到颜色的变化,而且还可以区分与靶标单个碱基错配的情况,有望在生物临床领域得到进一步广泛应用。
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References
Huang RC, Chiu WJ, Li YJ et al (2014) Detection of microRNA in tumor cells using exonuclease III and graphene oxide regulated signal amplification. ACS Appl Mater Interfaces 6:21780–21787
Kauraniemi P, Bärlund M, Monni O et al (2001) New amplified and highly expressed genes discovered in the ERBB2 applicant in breast cancer by cDNA microarrays. Cancer Res 61:8235–8240
Stephen SW, Yeung TM, Hsing IM (2008) Electrochemistry based real-time PCR on a microchip. Anal Chem 80:363–368
Wu MS, Qian GS, Xu JJ et al (2012) Sensitive electrochemiluminescence detection of c-Myc mRNA in breast cancer cells on a wireless bipolar electrode. Anal Chem 84:5407–5414
Wu Y, Kwak KJ, Agarwal K et al (2013) Detection of extracellular RNAs in cancer and viral infection via tethered cationic lipoplex nanoparticles containing molecular beacons. Anal Chem 85:11265–11274
Cao YW, Jin RC, Mirkin CA (2001) DNA-modified core-shell Ag/Au nanoparticles. J Am Chem Soc 123:7961–7962
Valentini P, Pompa PP (2013) Gold nanoparticles for naked-eye DNA detection: smart designs for sensitive assays. RSC Adv 3:19181–19190
Cao W, Wang XW, Fan HH et al (2015) Fabrication of superstable gold nanorod–carbon nanocapsule as a molecule loading material. Sci Bull 60:1101–1107
Zhao F, Hu B (2015) Cancer therapy may get a boost from gold nanorods. Sci Bull 60:279–280
Zhang X, Mark RS, Liu JW (2012) Fast pH-assisted functionalization of silver nanoparticles with monothiolated DNA. Chem Commun 48:10114–10116
Li H, Zhu Y, Dong SY et al (2014) Fast functionalization of silver decahedral nanoparticles with aptamers for colorimetric detection of human platelet-derived growth factor-BB. Anal Chim Acta 829:48–53
Li H, Sun Z, Zhong W et al (2010) Ultrasensitive electrochemical detection for DNA arrays based on silver nanoparticle aggregates. Anal Chem 82:5477–5483
Li H, Chen CY, Wei W et al (2012) Highly sensitive detection of proteins based on metal-enhanced fluorescence with novel silver nanostructures. Anal Chem 84:8656–8662
Lee JS, Lytton-Jean AK, Hurst SJ et al (2007) Silver nanoparticle-oligonucleotide conjugates based on DNA with triple cyclic disulfide moieties. Nano Lett 7:2112–2115
Su XD, Kanjanawarut R (2009) Control of metal nanoparticles aggregation and dispersion by PNA and PNA-DNA complexes, and its application for colorimetric DNA detection. ACS Nano 3:2751–2759
Nielsen PE (1998) Structural and biological properties of peptide nucleic acid (PNA). Pure Appl Chem 70:105–110
Nielsen PE, Haaima G (1997) Peptide nucleic acid (PNA), A DNA mimic with a pseudopeptide backbone. Chem Soc Rev 26:73–78
Joshi VG, Chindera K, Singh AK et al (2013) Rapid label-free visual assay for the detection and quantification of viral RNA using peptide nucleic acid and gold nanoparticles. Anal Chim Acta 795:1–7
Komiyama M, Ye S, Liang XG et al (2003) PNA for one-base differentiating protection of DNA from nuclease and its use for SNPs detection. J Am Chem Soc 125:3758–3762
Duy J, Smith RL, Collins S et al (2014) A field deployable colorimetric bioassay for the rapid and specific detection of ribosomal RNA. Biosens Bioelectron 52:433–437
Pocsfalvi G, Votta G, Vincenzo AD et al (2011) Analysis of secretome changes uncovers an autocrine/paracrine component in the modulation of cell proliferation and motility by c-Myc. J Proteome Res 10:5326–5337
Mehndiratta M, Palanichamy JK, Bhagat M et al (2011) CpG hypermethylation of the c-Myc promoter by dsRNA results in growth suppression. Mol Pharm 8:2302–2309
Acknowledgments
This work was partially supported by the National Natural Science Foundation of China (21305058, 21205056, 21075058 and 21503104) and Tai-Shan Scholar Research Fund of Shandong Province.
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Li, X., Song, J., Chen, BL. et al. A label-free colorimetric assay for detection of c-Myc mRNA based on peptide nucleic acid and silver nanoparticles. Sci. Bull. 61, 276–281 (2016). https://doi.org/10.1007/s11434-016-1004-3
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DOI: https://doi.org/10.1007/s11434-016-1004-3