Skip to main content
Log in

Enhancing the Production of Polyhydroxybutyrate, a Biodegradable Polymer by an Optimized Process Using a Novel Klebsiella Pneumonia Strain

  • Original Paper
  • Published:
Topics in Catalysis Aims and scope Submit manuscript

Abstract

Polyhydroxybutyrate (PHB), a sustainable biodegradable polymer with various industrial and medical applications, produced by microorganisms is a good replacement of conventional plastics, a major environmental contaminant. The aim of this study is to isolate and evaluate the PHB producing ability of the microorganisms isolated from various soil sources. By employing different staining methods such as Sudan black B, Nile red and Nile blue A, the primary screening of PHB producers was performed. Among the 104 soil isolates, four strains (SNA1, SNA2, SNA3 and SNA4) exhibited positive results for all the staining tests. On further studies, among these the strain SNA2 produced highest level of PHB (64% ) from its whole cell dry weight, while glucose (20 g/L) and urea (2 g/L) were used as the carbon and nitrogen sources respectively at pH 7, 30 °C after 48 h of incubation. The Fourier transform infrared spectroscopy (FTIR) and Proton Nuclear Magnetic Resonance (1H NMR) results confirmed that the polymer produced was PHB. The 16S rRNA sequencing revealed results that the strain SNA2 was Klebsiella pneumonia. The production ability of the novel Klebsiella pneumonia SNA2 was further enhanced by optimizing various process parameters such as carbon and nitrogen sources, pH, temperature and incubation period. The process optimization resulted in enhanced PHB synthesis (up to 75%) with Xylose as carbon source and urea as the nitrogen source with pH 7.5 at 35 °C after 36 h. In addition, an attempt to produce a biofilm from the extracted polymer was also successful. Thus, the novel bacterial isolate Klebsiella pneumonia SNA2 was proved to be a challenging host for the synthesis of PHB and the scale up studies are under progress. Whole genome sequencing, identification of pathway genes and metabolic engineering strategies were believed to enhance the PHB synthesis further to the industrial scale.

Graphical Abstract

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7

Similar content being viewed by others

References

  1. Afrin S, Rahman MM, Hossain MN et al (2022) Are there plastic particles in my sugar? A pioneering study on the characterization of microplastics in commercial sugars and risk assessment. Sci Total Environ 837:155849. https://doi.org/10.1016/j.scitotenv.2022.155849

    Article  ADS  CAS  PubMed  Google Scholar 

  2. Kumar V, Lakkaboyana SK, Tsouko E et al (2023) Commercialization potential of agro-based polyhydroxyalkanoates biorefinery: a technical perspective on advances and critical barriers. Int J Biol Macromol 234:123733. https://doi.org/10.1016/j.ijbiomac.2023.123733

    Article  CAS  PubMed  Google Scholar 

  3. Anthony A, Adetunji C (2021) Bioremediation of polythene and plastics using beneficial microorganisms. Microb Rejuvenation Pollut Env 3:281–302

    Google Scholar 

  4. Atiwesh G, Mikhael A, Parrish CC et al (2021) Environmental impact of bioplastic use: a review. Heliyon 7:e07918. https://doi.org/10.1016/j.heliyon.2021.e07918

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Das A, Ringu T, Ghosh S, Pramanik N (2023) A comprehensive review on recent advances in preparation, physicochemical characterization, and bioengineering applications of biopolymers. Polym Bull 80:7247–7312. https://doi.org/10.1007/s00289-022-04443-4

    Article  CAS  Google Scholar 

  6. Koller M (2019) Switching from petro-plastics to microbial polyhydroxyalkanoates (PHA): the biotechnological escape route of choice out of the plastic predicament? EuroBiotech J 3:32–44. https://doi.org/10.2478/ebtj-2019-0004

    Article  Google Scholar 

  7. Ashfaq A, Khursheed N, Fatima S et al (2022) Application of nanotechnology in food packaging: pros and cons. J Agric Food Res 7:100270. https://doi.org/10.1016/j.jafr.2022.100270

    Article  CAS  Google Scholar 

  8. Aragosa A, Specchia V, Frigione M (2021) Isolation of two bacterial species from argan soil in morocco associated with polyhydroxybutyrate (PHB) accumulation: current potential and future prospects for the bio-based polymer production. Polymers 13:1870. https://doi.org/10.3390/polym13111870

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Ibrahim NI, Shahar FS, Sultan MTH et al (2021) Overview of bioplastic introduction and its applications in product packaging. Coatings 11:1423. https://doi.org/10.3390/coatings11111423

    Article  CAS  Google Scholar 

  10. Upadhyay N, Tripathi S, Kushwaha A et al (2023) Renewable bio-based materials: a journey towards the development of sustainable ecosystem. In: Hussain CM, Kushwaha A, Bharagava RN, Goswami L (eds) Bio-based materials and waste for energy generation and resource management. Elsevier, Netherlands, pp 31–75

    Chapter  Google Scholar 

  11. Sharma S, Sudhakara P, Singh J et al (2021) Critical review of biodegradable and bioactive polymer composites for bone tissue engineering and drug delivery applications. Polymers 13:2623. https://doi.org/10.3390/polym13162623

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Vroman I, Tighzert L (2009) Biodegradable polymers. Materials 2:307–344. https://doi.org/10.3390/ma2020307

    Article  ADS  CAS  PubMed Central  Google Scholar 

  13. Dobrogojski J, Spychalski M, Luciński R, Borek S (2018) Transgenic plants as a source of polyhydroxyalkanoates. Acta Physiol Plant 40:162. https://doi.org/10.1007/s11738-018-2742-4

    Article  CAS  Google Scholar 

  14. Handrick R, Reinhardt S, Kimmig P, Jendrossek D (2004) The intracellular poly(3-hydroxybutyrate) (PHB) depolymerase of Rhodospirillum rubrum is a periplasm-located protein with specificity for native PHB and with structural similarity to extracellular PHB depolymerases. J Bacteriol 186:7243–7253. https://doi.org/10.1128/jb.186.21.7243-7253.2004

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Sahu CK, Hugar M, Kadeppagari RK (2022) Integrated Approaches for the production of biodegradable plastics and Bioenergy from Waste. Biotechnology for Zero Waste. John Wiley & Sons, Ltd, pp 19–31

    Chapter  Google Scholar 

  16. Trakunjae C, Boondaeng A, Apiwatanapiwat W et al (2021) Enhanced polyhydroxybutyrate (PHB) production by newly isolated rare actinomycetes Rhodococcus sp. strain BSRT1-1 using response surface methodology. Sci Rep 11:1896. https://doi.org/10.1038/s41598-021-81386-2

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Valdez-Calderón A, Barraza-Salas M, Quezada-Cruz M et al (2022) Production of polyhydroxybutyrate (PHB) by a novel Klebsiella pneumoniae strain using low-cost media from fruit peel residues. Biomass Convers Biorefinery 12:4925–4938. https://doi.org/10.1007/s13399-020-01147-5

    Article  CAS  Google Scholar 

  18. Siripurapu A, Kvn V, Shivshetty N, Poosarla VG (2022) Production and characterization of biodegradable polymer-polyhydroxybutyrate from agricultural waste-sugarcane bagasse by the novel marine bacterium Klebsiella pneumoniae G1. Bioresour Technol Rep 20:101268. https://doi.org/10.1016/j.biteb.2022.101268

    Article  CAS  Google Scholar 

  19. Moreira JB, Kuntzler SG, da Silva Vaz B et al (2022) 13 - polyhydroxybutyrate (PHB)-based blends and composites. In: Mavinkere Rangappa S, Parameswaranpillai J, Siengchin S, Ramesh M (eds) Biodegradable polymers, blends and composites. Woodhead Publishing, United Kingwood, pp 389–413

    Chapter  Google Scholar 

  20. Sankaranarayanan M, Seol E, Kim Y et al (2017) Measurement of crude-cell-extract glycerol dehydratase activity in recombinant Escherichia coli using coupled-enzyme reactions. J Ind Microbiol Biotechnol 44:477–488. https://doi.org/10.1007/s10295-017-1902-7

    Article  CAS  PubMed  Google Scholar 

  21. Getachew A, Woldesenbet F (2016) Production of biodegradable plastic by polyhydroxybutyrate (PHB) accumulating bacteria using low cost agricultural waste material. BMC Res Notes 9:509. https://doi.org/10.1186/s13104-016-2321-y

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  22. Narayanan M, Kandasamy S, Kumarasamy S et al (2020) Screening of polyhydroxybutyrate producing indigenous bacteria from polluted lake soil. Heliyon 6:e05381. https://doi.org/10.1016/j.heliyon.2020.e05381

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  23. Molecular characterization and UV improvement of some bioplastic-producing bacteria isolated from plants in Taif City, Saudi Arabia - Pharmacophore. https://pharmacophorejournal.com/article/molecular-characterization-and-uv-improvement-of-some-bioplastic-producing-bacteria-isolated-from-plants-in-taif-city-saudi-arabia. Accessed 7 Jun 2023

  24. Nishida M, Tanaka T, Hayakawa Y, Nishida M (2018) Solid-state nuclear magnetic resonance (nmr) and nuclear magnetic relaxation time analyses of molecular mobility and compatibility of plasticized polyhydroxyalkanoates (PHA) copolymers. Polymers 10:506. https://doi.org/10.3390/polym10050506

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  25. Spiekermann P, Rehm BH, Kalscheuer R et al (1999) A sensitive, viable-colony staining method using Nile red for direct screening of bacteria that accumulate polyhydroxyalkanoic acids and other lipid storage compounds. Arch Microbiol 171:73–80. https://doi.org/10.1007/s002030050681

    Article  CAS  PubMed  Google Scholar 

  26. Determination of polyhydroxybutyrate (phb) content in Ralstonia eutropha Using Gas Chromatography and Nile Red Staining - PubMed. https://pubmed.ncbi.nlm.nih.gov/34179275/. Accessed 7 Jun 2023

  27. Alarfaj AA, Arshad M, Sholkamy EN, Munusamy MA (2015) Extraction and characterization of polyhydroxybutyrates (PHB) from Bacillus thuringiensis KSADL127 isolated from mangrove environments of Saudi Arabia. Braz Arch Biol Technol 58:781–788. https://doi.org/10.1590/S1516-891320150500003

    Article  CAS  Google Scholar 

  28. Singh P, Parmar N (2011) Isolation and characterization of two novel polyhydroxybutyrate (PHB)-producing bacteria. Afr J Biotechnol 10:4907–4919. https://doi.org/10.4314/ajb.v10i24

    Article  CAS  Google Scholar 

  29. Biosynthesis and characterization of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) copolymer from wild-type Comamonas sp. EB172 - ScienceDirect. https://www.sciencedirect.com/science/article/abs/pii/S0141391010000303. Accessed 7 Jun 2023

  30. Ashok S, Sankaranarayanan M, Ko Y et al (2013) Production of 3-hydroxypropionic acid from glycerol by recombinant Klebsiella pneumoniae ∆dhaT∆yqhD which can produce vitamin B12 naturally. Biotechnol Bioeng 110:511–524. https://doi.org/10.1002/bit.24726

    Article  CAS  PubMed  Google Scholar 

  31. Adnan M, Siddiqui AJ, Ashraf SA et al (2023) Characterization and process optimization for enhanced production of polyhydroxybutyrate (PHB)-based biodegradable polymer from Bacillus flexus isolated from municipal solid waste landfill site. Polymers 15:1407. https://doi.org/10.3390/polym15061407

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  32. Preparation and properties of polyhydroxybutyrate blended with different types of starch - Zhang – 2010 - Journal of Applied Polymer Science - Wiley Online Library. https://onlinelibrary.wiley.com/doi/abs/10.1002/app.30991. Accessed 7 Jun 2023

  33. Sankaranarayanan RNN M (2023) Poly (3-hydroxybutyrate) isolation and characterization of biopolymers of microbial origin towards a sustainable future. Eur Chem Bull 12:90–106. https://doi.org/10.31838/ecb/2023.12.sa1.008

    Article  Google Scholar 

  34. Taabodi M, Hashem FM, Oscar TP et al (2019) The possible roles of Escherichia coli  in the nitrogen cycle. Int J Environ Res 13:597–602. https://doi.org/10.1007/s41742-019-00191-y

    Article  CAS  Google Scholar 

  35. Dubey S, Bharmoria P, Gehlot P et al (2017) 1-Ethyl-3-methylimidazolium diethylphosphate based extraction of bioplastic polyhydroxyalkanoates from bacteria: green and sustainable approach. ACS Sustain Chem Eng. https://doi.org/10.1021/acssuschemeng.7b03096

    Article  Google Scholar 

  36. Jan S, Roblot C, Courtois J et al (1996) 1H NMR spectroscopic determination of poly 3-hydroxybutyrate extracted from microbial biomass. Enzyme Microb Technol 18:195–201. https://doi.org/10.1016/0141-0229(95)00096-8

    Article  CAS  Google Scholar 

  37. Bhagowati P, Pradhan S, Dash HR, Das S (2015) Production, optimization and characterization of polyhydroxybutyrate, a biodegradable plastic by Bacillus spp. Biosci Biotechnol Biochem 79:1454–1463. https://doi.org/10.1080/09168451.2015.1034651

    Article  CAS  PubMed  Google Scholar 

  38. Ravi SN, Sankaranarayanan M (2023) Co-production of Propanediol and 3- hydroxy propionic acid from glycerol using novel Klebsiella pneumonia isolate. J Surv Fish Sci 10:3418–3430. https://doi.org/10.17762/sfs.v10i1S.707

    Article  Google Scholar 

  39. Kumar V, Sankaranarayanan M, Durgapal M et al (2013) Simultaneous production of 3-hydroxypropionic acid and 1,3-propanediol from glycerol using resting cells of the lactate dehydrogenase-deficient recombinant Klebsiella pneumoniae overexpressing an aldehyde dehydrogenase. Bioresour Technol 135:555–563. https://doi.org/10.1016/j.biortech.2012.11.018

    Article  CAS  PubMed  Google Scholar 

  40. Nandhini RS, Sankar M (2023) Redox balanced co-production of propanediol and 3-hydroxypropionic acid from glycerol using novel recombinant Klebsiella quasipneumonia MSN12. J Inorg Organomet Polym Mater. https://doi.org/10.1007/s10904-023-02676-y

    Article  Google Scholar 

  41. Ravi SN, Sankaranarayanan M (2023) Enhanced synthesis of 3-hydroxypropionic acid by eliminating by-products using recombinant Escherichia coli as a whole cell biocatalyst. Top Catal. https://doi.org/10.1007/s11244-023-01796-6

    Article  Google Scholar 

  42. Ashok S, Mohan Raj S, Ko Y et al (2013) Effect of puuC overexpression and nitrate addition on glycerol metabolism and anaerobic 3-hydroxypropionic acid production in recombinant Klebsiella pneumoniae ∆glpK∆dhaT. Metab Eng 15:10–24. https://doi.org/10.1016/j.ymben.2012.09.004

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgements

The authors would like to thank Dr. U. Koushi Kumar for his help and constant support in the analysis part. Authors would also like to acknowledge all the faculty in department of Biotechnology, Vel Tech Rangarajan Dr. Sagunthala R&D Institute of Science and Technology, for the help extended for the research.

Funding

The part of this research was supported by the seed fund provided by office of Dean R&D, Vel Tech Rangarajan Dr. Sagunthala R&D Institute of Science and Technology.

Author information

Authors and Affiliations

Authors

Contributions

Both the authors contributed to the study conception and design. Material preparation, data collection and analysis were performed by NNR. The first draft of the manuscript was written by NNR and the corrections and modifications were done by MS. Both the authors read and approved the final manuscript.

Corresponding author

Correspondence to Mugesh Sankaranarayanan.

Ethics declarations

Conflict of interest

The authors have no conflict of interest to declare.

Additional information

Publisher’s Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Raju, N.N., Sankaranarayanan, M. Enhancing the Production of Polyhydroxybutyrate, a Biodegradable Polymer by an Optimized Process Using a Novel Klebsiella Pneumonia Strain. Top Catal 67, 181–191 (2024). https://doi.org/10.1007/s11244-023-01877-6

Download citation

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11244-023-01877-6

Keywords

Navigation