Abstract
Introduction
In the last decade, a number of genomic and pharmacological studies have demonstrated the importance of epigenetic dysregulation in medulloblastoma initiation and progression. High throughput approaches including gene expression array, next-generation sequencing (NGS), and methylation profiling have now clearly identified at least four molecular subgroups within medulloblastoma, each with distinct clinical and prognostic characteristics. These studies have clearly shown that despite the overall paucity of mutations, clinically relevant events do occur within the cellular epigenetic machinery. Thus, this review aims to provide an overview of our current understanding of the spectrum of epi-oncogenetic perturbations in medulloblastoma.
Methods
Comprehensive review of epigenetic profiles of different subgroups of medulloblastoma in the context of molecular features.
Summary
Epigenetic regulation is mediated mainly by DNA methylation, histone modifications and microRNAs (miRNA). Importantly, epigenetic mis-events are reversible and have immense therapeutic potential.
Conclusion
The widespread epigenetic alterations present in these tumors has generated intense interest in their use as therapeutic targets. We provide an assessment of the progress that has been made towards the development of molecular subtypes-targeted therapies and the current status of clinical trials that have leveraged these recent advances.
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Consent for publication
All authors have reviewed and given consent to this submission of this manuscript.
References
Ostrom QT, de Blank PM, Kruchko C, Petersen CM, Liao P, Finlay JL et al (2015) Alex’s Lemonade Stand Foundation infant and childhood primary brain and central nervous system tumors diagnosed in the United States in 2007–2011. Neuro-oncology 16(Suppl 10):x1–x36
Louis DN, Perry A, Reifenberger G, von Deimling A, Figarella-Branger D, Cavenee WK et al (2016) The 2016 World Health Organization Classification of Tumors of the Central Nervous System: a summary. Acta Neuropathol 131(6):803–820
Ellison DW, Dalton J, Kocak M, Nicholson SL, Fraga C, Neale G et al (2011) Medulloblastoma: clinicopathological correlates of SHH, WNT, and non-SHH/WNT molecular subgroups. Acta Neuropathol 121(3):381–396
Ramaswamy V, Remke M, Bouffet E, Bailey S, Clifford SC, Doz F et al (2016) Risk stratification of childhood medulloblastoma in the molecular era: the current consensus. Acta Neuropathol 131(6):821–831
Blaeschke F, Paul MC, Schuhmann MU, Rabsteyn A, Schroeder C, Casadei N et al (2019) Low mutational load in pediatric medulloblastoma still translates into neoantigens as targets for specific T-cell immunotherapy. Cytotherapy 21(9):973–986
Yi J, Wu J (2018) Epigenetic regulation in medulloblastoma. Mol Cell Neurosci 87:65–76
Roussel MF, Stripay JL (2018) Epigenetic drivers in pediatric medulloblastoma. Cerebellum 17(1):28–36
Jones PA, Baylin SB (2007) The epigenomics of cancer. Cell 128(4):683–692
Toyota M, Issa JP (2005) Epigenetic changes in solid and hematopoietic tumors. Semin Oncol 32(5):521–530
Ehrlich M (2002) DNA methylation in cancer: too much, but also too little. Oncogene 21(35):5400–5413
Estecio MR, Gharibyan V, Shen L, Ibrahim AE, Doshi K, He R et al (2007) LINE-1 hypomethylation in cancer is highly variable and inversely correlated with microsatellite instability. PLoS ONE 2(5):e399
Capper D, Jones DTW, Sill M, Hovestadt V, Schrimpf D, Sturm D et al (2018) DNA methylation-based classification of central nervous system tumours. Nature 555(7697):469–474
Fernandez AF, Assenov Y, Martin-Subero JI, Balint B, Siebert R, Taniguchi H et al (2012) A DNA methylation fingerprint of 1628 human samples. Genome Res 22(2):407–419
Hao X, Luo H, Krawczyk M, Wei W, Wang W, Wang J et al (2017) DNA methylation markers for diagnosis and prognosis of common cancers. Proc Natl Acad Sci USA 114(28):7414–7419
Jones PA (2012) Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat Rev Genet 13(7):484–492
Moran S, Martinez-Cardus A, Sayols S, Musulen E, Balana C, Estival-Gonzalez A et al (2016) Epigenetic profiling to classify cancer of unknown primary: a multicentre, retrospective analysis. Lancet Oncol 17(10):1386–1395
Hovestadt V, Jones DT, Picelli S, Wang W, Kool M, Northcott PA et al (2014) Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing. Nature 510(7506):537–541
Lindsey JC, Schwalbe EC, Potluri S, Bailey S, Williamson D, Clifford SC (2014) TERT promoter mutation and aberrant hypermethylation are associated with elevated expression in medulloblastoma and characterise the majority of non-infant SHH subgroup tumours. Acta Neuropathol 127(2):307–309
Korshunov A, Sahm F, Zheludkova O, Golanov A, Stichel D, Schrimpf D et al (2019) DNA methylation profiling is a method of choice for molecular verification of pediatric WNT-activated medulloblastomas. Neuro-oncology 21(2):214–221
Sharma T, Schwalbe EC, Williamson D, Sill M, Hovestadt V, Mynarek M et al (2019) Second-generation molecular subgrouping of medulloblastoma: an international meta-analysis of Group 3 and Group 4 subtypes. Acta Neuropathol 138(2):309–326
Taylor MD, Northcott PA, Korshunov A, Remke M, Cho YJ, Clifford SC et al (2012) Molecular subgroups of medulloblastoma: the current consensus. Acta Neuropathol 123(4):465–472
Schwalbe EC, Lindsey JC, Nakjang S, Crosier S, Smith AJ, Hicks D et al (2017) Novel molecular subgroups for clinical classification and outcome prediction in childhood medulloblastoma: a cohort study. Lancet Oncol 18(7):958–971
Schwalbe EC, Williamson D, Lindsey JC, Hamilton D, Ryan SL, Megahed H et al (2013) DNA methylation profiling of medulloblastoma allows robust subclassification and improved outcome prediction using formalin-fixed biopsies. Acta Neuropathol 125(3):359–371
Wang J, Garancher A, Ramaswamy V, Wechsler-Reya RJ (2018) Medulloblastoma: from molecular subgroups to molecular targeted therapies. Annu Rev Neurosci 41:207–232
Cho YJ, Tsherniak A, Tamayo P, Santagata S, Ligon A, Greulich H et al (2011) Integrative genomic analysis of medulloblastoma identifies a molecular subgroup that drives poor clinical outcome. J Clin Oncol 29(11):1424–1430
Kool M, Koster J, Bunt J, Hasselt NE, Lakeman A, van Sluis P et al (2008) Integrated genomics identifies five medulloblastoma subtypes with distinct genetic profiles, pathway signatures and clinicopathological features. PLoS ONE 3(8):e3088
Northcott PA, Korshunov A, Witt H, Hielscher T, Eberhart CG, Mack S et al (2011) Medulloblastoma comprises four distinct molecular variants. J Clin Oncol 29(11):1408–1414
Thompson MC, Fuller C, Hogg TL, Dalton J, Finkelstein D, Lau CC et al (2006) Genomics identifies medulloblastoma subgroups that are enriched for specific genetic alterations. J Clin Oncol 24(12):1924–1931
Cavalli FMG, Remke M, Rampasek L, Peacock J, Shih DJH, Luu B et al (2017) Intertumoral heterogeneity within medulloblastoma subgroups. Cancer Cell 31(6):737-754.e6
Northcott PA, Buchhalter I, Morrissy AS, Hovestadt V, Weischenfeldt J, Ehrenberger T et al (2017) The whole-genome landscape of medulloblastoma subtypes. Nature 547(7663):311–317
Toyota M, Ahuja N, Ohe-Toyota M, Herman JG, Baylin SB, Issa JP (1999) CpG island methylator phenotype in colorectal cancer. Proc Natl Acad Sci USA 96(15):8681–8686
Lindsey JC, Lusher ME, Anderton JA, Bailey S, Gilbertson RJ, Pearson AD et al (2004) Identification of tumour-specific epigenetic events in medulloblastoma development by hypermethylation profiling. Carcinogenesis 25(5):661–668
Shahi MH, Afzal M, Sinha S, Eberhart CG, Rey JA, Fan X et al (2010) Regulation of sonic hedgehog-GLI1 downstream target genes PTCH1, Cyclin D2, Plakoglobin, PAX6 and NKX2.2 and their epigenetic status in medulloblastoma and astrocytoma. BMC Cancer 10:614
Shahi MH, Afzal M, Sinha S, Eberhart CG, Rey JA, Fan X et al (2011) Human hedgehog interacting protein expression and promoter methylation in medulloblastoma cell lines and primary tumor samples. J Neurooncol 103(2):287–296
Sexton-Oates A, MacGregor D, Dodgshun A, Saffery R (2015) The potential for epigenetic analysis of paediatric CNS tumours to improve diagnosis, treatment and prognosis. Ann Oncol 26(7):1314–1324
von Bueren AO, Bacolod MD, Hagel C, Heinimann K, Fedier A, Kordes U et al (2012) Mismatch repair deficiency: a temozolomide resistance factor in medulloblastoma cell lines that is uncommon in primary medulloblastoma tumours. Br J Cancer 107(8):1399–1408
Pritchard JI, Olson JM (2008) Methylation of PTCH1, the Patched-1 gene, in a panel of primary medulloblastomas. Cancer Genet Cytogenet 180(1):47–50
Kongkham PN, Northcott PA, Croul SE, Smith CA, Taylor MD, Rutka JT (2010) The SFRP family of WNT inhibitors function as novel tumor suppressor genes epigenetically silenced in medulloblastoma. Oncogene 29(20):3017–3024
Unland R, Kerl K, Schlosser S, Farwick N, Plagemann T, Lechtape B et al (2014) Epigenetic repression of the dopamine receptor D4 in pediatric tumors of the central nervous system. J Neurooncol 116(2):237–249
Pfister S, Schlaeger C, Mendrzyk F, Wittmann A, Benner A, Kulozik A et al (2007) Array-based profiling of reference-independent methylation status (aPRIMES) identifies frequent promoter methylation and consecutive downregulation of ZIC2 in pediatric medulloblastoma. Nucleic Acids Res 35(7):e51
Turcan S, Rohle D, Goenka A, Walsh LA, Fang F, Yilmaz E et al (2012) IDH1 mutation is sufficient to establish the glioma hypermethylator phenotype. Nature 483(7390):479–483
Noushmehr H, Weisenberger DJ, Diefes K, Phillips HS, Pujara K, Berman BP et al (2010) Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma. Cancer Cell 17(5):510–522
Ceccarelli M, Barthel FP, Malta TM, Sabedot TS, Salama SR, Murray BA et al (2016) Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma. Cell 164(3):550–563
El-Ayadi M, Egervari K, Merkler D, McKee TA, Gumy-Pause F, Stichel D et al (2018) Concurrent IDH1 and SMARCB1 mutations in pediatric medulloblastoma: a case report. Front Neurol 9:398
Xie W, Schultz MD, Lister R, Hou Z, Rajagopal N, Ray P et al (2013) Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell 153(5):1134–1148
Jeong M, Sun D, Luo M, Huang Y, Challen GA, Rodriguez B et al (2014) Large conserved domains of low DNA methylation maintained by Dnmt3a. Nat Genet 46(1):17–23
Ohm JE, McGarvey KM, Yu X, Cheng L, Schuebel KE, Cope L et al (2007) A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing. Nat Genet 39(2):237–242
Schlesinger Y, Straussman R, Keshet I, Farkash S, Hecht M, Zimmerman J et al (2007) Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer. Nat Genet 39(2):232–236
Lin CY, Erkek S, Tong Y, Yin L, Federation AJ, Zapatka M et al (2016) Active medulloblastoma enhancers reveal subgroup-specific cellular origins. Nature 530(7588):57–62
Mack SC, Witt H, Piro RM, Gu L, Zuyderduyn S, Stutz AM et al (2014) Epigenomic alterations define lethal CIMP-positive ependymomas of infancy. Nature 506(7489):445–450
Sharma S, Kelly TK, Jones PA (2010) Epigenetics in cancer. Carcinogenesis 31(1):27–36
Kouzarides T (2007) Chromatin modifications and their function. Cell 128(4):693–705
Sadakierska-Chudy A, Filip M (2015) A comprehensive view of the epigenetic landscape. Part II: histone post-translational modification, nucleosome level, and chromatin regulation by ncRNAs. Neurotox Res 27(2):172–197
Sabari BR, Zhang D, Allis CD, Zhao Y (2017) Metabolic regulation of gene expression through histone acylations. Nat Rev Mol Cell Biol 18(2):90–101
Shi Y, Whetstine JR (2007) Dynamic regulation of histone lysine methylation by demethylases. Mol Cell 25(1):1–14
Biswas S, Rao CM (2018) Epigenetic tools (The Writers, The Readers and The Erasers) and their implications in cancer therapy. Eur J Pharmacol 837:8–24
Strahl BD, Allis CD (2000) The language of covalent histone modifications. Nature 403(6765):41–45
Batora NV, Sturm D, Jones DT, Kool M, Pfister SM, Northcott PA (2014) Transitioning from genotypes to epigenotypes: why the time has come for medulloblastoma epigenomics. Neuroscience 264:171–185
Dubuc AM, Remke M, Korshunov A, Northcott PA, Zhan SH, Mendez-Lago M et al (2013) Aberrant patterns of H3K4 and H3K27 histone lysine methylation occur across subgroups in medulloblastoma. Acta Neuropathol 125(3):373–384
Jones DT, Jager N, Kool M, Zichner T, Hutter B, Sultan M et al (2012) Dissecting the genomic complexity underlying medulloblastoma. Nature 488(7409):100–105
Northcott PA, Shih DJ, Peacock J, Garzia L, Morrissy AS, Zichner T et al (2012) Subgroup-specific structural variation across 1,000 medulloblastoma genomes. Nature 488(7409):49–56
Marmorstein R, Zhou MM (2014) Writers and readers of histone acetylation: structure, mechanism, and inhibition. Cold Spring Harb Perspect Biol 6(7):a018762
Pfister S, Rea S, Taipale M, Mendrzyk F, Straub B, Ittrich C et al (2008) The histone acetyltransferase hMOF is frequently downregulated in primary breast carcinoma and medulloblastoma and constitutes a biomarker for clinical outcome in medulloblastoma. Int J Cancer 122(6):1207–1213
Malatesta M, Steinhauer C, Mohammad F, Pandey DP, Squatrito M, Helin K (2013) Histone acetyltransferase PCAF is required for Hedgehog-Gli-dependent transcription and cancer cell proliferation. Cancer Res 73(20):6323–6333
Pugh TJ, Weeraratne SD, Archer TC, Pomeranz Krummel DA, Auclair D, Bochicchio J et al (2012) Medulloblastoma exome sequencing uncovers subtype-specific somatic mutations. Nature 488(7409):106–110
Robinson G, Parker M, Kranenburg TA, Lu C, Chen X, Ding L et al (2012) Novel mutations target distinct subgroups of medulloblastoma. Nature 488(7409):43–48
Coni S, Antonucci L, D’Amico D, Di Magno L, Infante P, De Smaele E et al (2013) Gli2 acetylation at lysine 757 regulates hedgehog-dependent transcriptional output by preventing its promoter occupancy. PLoS ONE 8(6):e65718
Seto E, Yoshida M (2014) Erasers of histone acetylation: the histone deacetylase enzymes. Cold Spring Harb Perspect Biol 6(4):a018713
Ecker J, Oehme I, Mazitschek R, Korshunov A, Kool M, Hielscher T et al (2015) Targeting class I histone deacetylase 2 in MYC amplified group 3 medulloblastoma. Acta Neuropathol Commun 3:22
Milde T, Oehme I, Korshunov A, Kopp-Schneider A, Remke M, Northcott P et al (2010) HDAC5 and HDAC9 in medulloblastoma: novel markers for risk stratification and role in tumor cell growth. Clin Cancer Res 16(12):3240–3252
Zhang CL, McKinsey TA, Chang S, Antos CL, Hill JA, Olson EN (2002) Class II histone deacetylases act as signal-responsive repressors of cardiac hypertrophy. Cell 110(4):479–488
McKinsey TA, Zhang CL, Lu J, Olson EN (2000) Signal-dependent nuclear export of a histone deacetylase regulates muscle differentiation. Nature 408(6808):106–111
Dobson THW, Hatcher RJ, Swaminathan J, Das CM, Shaik S, Tao RH et al (2017) Regulation of USP37 expression by REST-associated G9a-dependent histone methylation. Mol Cancer Res 15(8):1073–1084
Dobson THW, Tao RH, Swaminathan J, Maegawa S, Shaik S, Bravo-Alegria J et al (2019) Transcriptional repressor REST drives lineage stage-specific chromatin compaction at Ptch1 and increases AKT activation in a mouse model of medulloblastoma. Sci Signal 12(565):eaan8680
Su X, Gopalakrishnan V, Stearns D, Aldape K, Lang FF, Fuller G et al (2006) Abnormal expression of REST/NRSF and Myc in neural stem/progenitor cells causes cerebellar tumors by blocking neuronal differentiation. Mol Cell Biol 26(5):1666–1678
Taylor P, Fangusaro J, Rajaram V, Goldman S, Helenowski IB, MacDonald T et al (2012) REST is a novel prognostic factor and therapeutic target for medulloblastoma. Mol Cancer Ther 11(8):1713–1723
Coni S, Mancuso AB, Di Magno L, Sdruscia G, Manni S, Serrao SM et al (2017) Selective targeting of HDAC1/2 elicits anticancer effects through Gli1 acetylation in preclinical models of SHH Medulloblastoma. Sci Rep 7:44079
Liu WD, Wang HW, Muguira M, Breslin MB, Lan MS (2006) INSM1 functions as a transcriptional repressor of the neuroD/beta2 gene through the recruitment of cyclin D1 and histone deacetylases. Biochem J 397(1):169–177
Ma JX, Li H, Chen XM, Yang XH, Wang Q, Wu ML et al (2013) Expression patterns and potential roles of SIRT1 in human medulloblastoma cells in vivo and in vitro. Neuropathology 33(1):7–16
Delmore JE, Issa GC, Lemieux ME, Rahl PB, Shi J, Jacobs HM et al (2011) BET bromodomain inhibition as a therapeutic strategy to target c-Myc. Cell 146(6):904–917
Bandopadhayay P, Bergthold G, Nguyen B, Schubert S, Gholamin S, Tang Y et al (2014) BET bromodomain inhibition of MYC-amplified medulloblastoma. Clin Cancer Res 20(4):912–925
Long J, Li B, Rodriguez-Blanco J, Pastori C, Volmar CH, Wahlestedt C et al (2014) The BET bromodomain inhibitor I-BET151 acts downstream of smoothened protein to abrogate the growth of hedgehog protein-driven cancers. J Biol Chem 289(51):35494–35502
Tang Y, Gholamin S, Schubert S, Willardson MI, Lee A, Bandopadhayay P et al (2014) Epigenetic targeting of Hedgehog pathway transcriptional output through BET bromodomain inhibition. Nat Med 20(7):732–740
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z et al (2007) High-resolution profiling of histone methylations in the human genome. Cell 129(4):823–837
Hyun K, Jeon J, Park K, Kim J (2017) Writing, erasing and reading histone lysine methylations. Exp Mol Med 49(4):e324
Briggs SD, Bryk M, Strahl BD, Cheung WL, Davie JK, Dent SY et al (2001) Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae. Genes Dev 15(24):3286–3295
Ge K (2012) Epigenetic regulation of adipogenesis by histone methylation. Biochim Biophys Acta 1819(7):727–732
Parsons DW, Li M, Zhang X, Jones S, Leary RJ, Lin JC et al (2011) The genetic landscape of the childhood cancer medulloblastoma. Science 331(6016):435–439
Northcott PA, Nakahara Y, Wu X, Feuk L, Ellison DW, Croul S et al (2009) Multiple recurrent genetic events converge on control of histone lysine methylation in medulloblastoma. Nat Genet 41(4):465–472
Herz HM, Mohan M, Garruss AS, Liang K, Takahashi YH, Mickey K et al (2012) Enhancer-associated H3K4 monomethylation by Trithorax-related, the Drosophila homolog of mammalian Mll3/Mll4. Genes Dev 26(23):2604–2620
Bunt J, Hasselt NA, Zwijnenburg DA, Koster J, Versteeg R, Kool M (2013) OTX2 sustains a bivalent-like state of OTX2-bound promoters in medulloblastoma by maintaining their H3K27me3 levels. Acta Neuropathol 125(3):385–394
Klose RJ, Kallin EM, Zhang Y (2006) JmjC-domain-containing proteins and histone demethylation. Nat Rev Genet 7(9):715–727
Van der Meulen J, Speleman F, Van Vlierberghe P (2014) The H3K27me3 demethylase UTX in normal development and disease. Epigenetics 9(5):658–668
Shi X, Zhang Z, Zhan X, Cao M, Satoh T, Akira S et al (2014) An epigenetic switch induced by Shh signalling regulates gene activation during development and medulloblastoma growth. Nat Commun 5:5425
Parker LL, Atherton-Fessler S, Lee MS, Ogg S, Falk JL, Swenson KI et al (1991) Cyclin promotes the tyrosine phosphorylation of p34cdc2 in a wee1 + dependent manner. EMBO J 10(5):1255–1263
Harris PS, Venkataraman S, Alimova I, Birks DK, Balakrishnan I, Cristiano B et al (2014) Integrated genomic analysis identifies the mitotic checkpoint kinase WEE1 as a novel therapeutic target in medulloblastoma. Mol Cancer 13:72
Mahajan K, Fang B, Koomen JM, Mahajan NP (2012) H2B Tyr37 phosphorylation suppresses expression of replication-dependent core histone genes. Nat Struct Mol Biol 19(9):930–937
Mahajan K, Mahajan NP (2013) WEE1 tyrosine kinase, a novel epigenetic modifier. Trends Genet 29(7):394–402
Wang J, Qiu Z, Wu Y (2018) Ubiquitin regulation: the histone modifying enzyme’s story. Cells 7(9):118
Catania A, Maira F, Skarmoutsou E, D’Amico F, Abounader R, Mazzarino MC (2012) Insight into the role of microRNAs in brain tumors (review). Int J Oncol 40(3):605–624
Garg N, Vijayakumar T, Bakhshinyan D, Venugopal C, Singh SK (2015) MicroRNA regulation of brain tumour initiating cells in central nervous system tumours. Stem Cells Int 2015:141793
Hummel R, Maurer J, Haier J (2011) MicroRNAs in brain tumors: a new diagnostic and therapeutic perspective? Mol Neurobiol 44(3):223–234
Joshi P, Katsushima K, Zhou R, Meoded A, Stapleton S, Jallo G et al (2019) The therapeutic and diagnostic potential of regulatory noncoding RNAs in medulloblastoma. Neurooncol Adv 1(1):vdz023
Leichter AL, Sullivan MJ, Eccles MR, Chatterjee A (2017) MicroRNA expression patterns and signalling pathways in the development and progression of childhood solid tumours. Mol Cancer 16(1):15
Mollashahi B, Aghamaleki FS, Movafagh A (2019) The roles of miRNAs in medulloblastoma: a systematic review. J Cancer Prev 24(2):79–90
Pang JC, Kwok WK, Chen Z, Ng HK (2009) Oncogenic role of microRNAs in brain tumors. Acta Neuropathol 117(6):599–611
Pezuk JA, Salomao KB, Baroni M, Pereira CA, Geron L, Brassesco MS (2019) Aberrantly expressed microRNAs and their implications in childhood central nervous system tumors. Cancer Metastasis Rev 38(4):813–828
Shalaby T, Fiaschetti G, Baumgartner M, Grotzer MA (2014) MicroRNA signatures as biomarkers and therapeutic target for CNS embryonal tumors: the pros and the cons. Int J Mol Sci 15(11):21554–21586
Wang X, Holgado BL, Ramaswamy V, Mack S, Zayne K, Remke M et al (2018) miR miR on the wall, who’s the most malignant medulloblastoma miR of them all? Neuro-oncology 20(3):313–323
Zhi F, Wang S, Wang R, Xia X, Yang Y (2013) From small to big: microRNAs as new players in medulloblastomas. Tumour Biol 34(1):9–15
Bai AH, Milde T, Remke M, Rolli CG, Hielscher T, Cho YJ et al (2012) MicroRNA-182 promotes leptomeningeal spread of non-sonic hedgehog-medulloblastoma. Acta Neuropathol 123(4):529–538
Genovesi LA, Carter KW, Gottardo NG, Giles KM, Dallas PB (2011) Integrated analysis of miRNA and mRNA expression in childhood medulloblastoma compared with neural stem cells. PLoS ONE 6(9):e23935
Jin Y, Xiong A, Zhang Z, Li S, Huang H, Yu TT et al (2014) MicroRNA-31 suppresses medulloblastoma cell growth by inhibiting DNA replication through minichromosome maintenance 2. Oncotarget 5(13):4821–4833
Pal R, Greene S (2015) microRNA-10b is overexpressed and critical for cell survival and proliferation in medulloblastoma. PLoS ONE 10(9):e0137845
Tanno B, Babini G, Leonardi S, Giardullo P, De Stefano I, Pasquali E et al (2016) Ex vivo miRNome analysis in Ptch1+/- cerebellum granule cells reveals a subset of miRNAs involved in radiation-induced medulloblastoma. Oncotarget 7(42):68253–68269
Venkataraman S, Alimova I, Fan R, Harris P, Foreman N, Vibhakar R (2010) MicroRNA 128a increases intracellular ROS level by targeting Bmi-1 and inhibits medulloblastoma cancer cell growth by promoting senescence. PLoS ONE 5(6):e10748
Kadin ME, Rubinstein LJ, Nelson JS (1970) Neonatal cerebellar medulloblastoma originating from the fetal external granular layer. J Neuropathol Exp Neurol 29(4):583–600
Roussel MF, Hatten ME (2011) Cerebellum development and medulloblastoma. Curr Top Dev Biol 94:235–282
Ferretti E, De Smaele E, Miele E, Laneve P, Po A, Pelloni M et al (2008) Concerted microRNA control of Hedgehog signalling in cerebellar neuronal progenitor and tumour cells. EMBO J 27(19):2616–2627
Murphy BL, Obad S, Bihannic L, Ayrault O, Zindy F, Kauppinen S et al (2013) Silencing of the miR-17~92 cluster family inhibits medulloblastoma progression. Cancer Res 73(23):7068–7078
Northcott PA, Fernandez LA, Hagan JP, Ellison DW, Grajkowska W, Gillespie Y et al (2009) The miR-17/92 polycistron is up-regulated in sonic hedgehog-driven medulloblastomas and induced by N-myc in sonic hedgehog-treated cerebellar neural precursors. Cancer Res 69(8):3249–3255
Uziel T, Karginov FV, Xie S, Parker JS, Wang YD, Gajjar A et al (2009) The miR-17~92 cluster collaborates with the Sonic Hedgehog pathway in medulloblastoma. Proc Natl Acad Sci USA 106(8):2812–2817
Gokhale A, Kunder R, Goel A, Sarin R, Moiyadi A, Shenoy A et al (2010) Distinctive microRNA signature of medulloblastomas associated with the WNT signaling pathway. J Cancer Res Ther 6(4):521–529
Kunder R, Jalali R, Sridhar E, Moiyadi A, Goel N, Goel A et al (2013) Real-time PCR assay based on the differential expression of microRNAs and protein-coding genes for molecular classification of formalin-fixed paraffin embedded medulloblastomas. Neuro-oncology 15(12):1644–1651
Yogi K, Sridhar E, Goel N, Jalali R, Goel A, Moiyadi A et al (2015) MiR-148a, a microRNA upregulated in the WNT subgroup tumors, inhibits invasion and tumorigenic potential of medulloblastoma cells by targeting Neuropilin 1. Oncoscience 2(4):334–348
Weeraratne SD, Amani V, Teider N, Pierre-Francois J, Winter D, Kye MJ et al (2012) Pleiotropic effects of miR-183~96~182 converge to regulate cell survival, proliferation and migration in medulloblastoma. Acta Neuropathol 123(4):539–552
Chuang JC, Jones PA (2007) Epigenetics and microRNAs. Pediatr Res 61(5 Pt 2):24R–9R
Flotho C, Sommer S, Lubbert M (2018) DNA-hypomethylating agents as epigenetic therapy before and after allogeneic hematopoietic stem cell transplantation in myelodysplastic syndromes and juvenile myelomonocytic leukemia. Semin Cancer Biol 51:68–79
Yun S, Vincelette ND, Abraham I, Robertson KD, Fernandez-Zapico ME, Patnaik MM (2016) Targeting epigenetic pathways in acute myeloid leukemia and myelodysplastic syndrome: a systematic review of hypomethylating agents trials. Clin Epigenet 8:68
Thompson EM, Ashley D, Landi D (2020) Current medulloblastoma subgroup specific clinical trials. Transl Pediatr 9(2):157–162
Fouladi M, Park JR, Stewart CF, Gilbertson RJ, Schaiquevich P, Sun J et al (2010) Pediatric phase I trial and pharmacokinetic study of vorinostat: a Children’s Oncology Group phase I consortium report. J Clin Oncol 28(22):3623–3629
Hummel TR, Wagner L, Ahern C, Fouladi M, Reid JM, McGovern RM et al (2013) A pediatric phase 1 trial of vorinostat and temozolomide in relapsed or refractory primary brain or spinal cord tumors: a Children’s Oncology Group phase 1 consortium study. Pediatr Blood Cancer 60(9):1452–1457
Callegari K, Maegawa S, Bravo-Alegria J, Gopalakrishnan V (2018) Pharmacological inhibition of LSD1 activity blocks REST-dependent medulloblastoma cell migration. Cell Commun Signal 16(1):60
Robinson GW, Orr BA, Wu G, Gururangan S, Lin T, Qaddoumi I et al (2015) Vismodegib exerts targeted efficacy against recurrent sonic hedgehog-subgroup medulloblastoma: results from Phase II Pediatric Brain Tumor Consortium studies PBTC-025B and PBTC-032. J Clin Oncol 33(24):2646–2654
Carballo GB, Honorato JR, de Lopes GPF, Spohr T (2018) A highlight on Sonic hedgehog pathway. Cell Commun Signal 16(1):11
Rimkus TK, Carpenter RL, Qasem S, Chan M, Lo HW (2016) Targeting the sonic hedgehog signaling pathway: review of smoothened and GLI inhibitors. Cancers (Basel) 8(2):22
Ferretti E, De Smaele E, Po A, Di Marcotullio L, Tosi E, Espinola MS et al (2009) MicroRNA profiling in human medulloblastoma. Int J Cancer 124(3):568–577
Wu J, Xie X (2006) Comparative sequence analysis reveals an intricate network among REST, CREB and miRNA in mediating neuronal gene expression. Genome Biol 7(9):R85
Liu W, Gong YH, Chao TF, Peng XZ, Yuan JG, Ma ZY et al (2009) Identification of differentially expressed microRNAs by microarray: a possible role for microRNAs gene in medulloblastomas. Chin Med J (Engl) 122(20):2405–2411
Li Y, Guessous F, Zhang Y, Dipierro C, Kefas B, Johnson E et al (2009) MicroRNA-34a inhibits glioblastoma growth by targeting multiple oncogenes. Cancer Res 69(19):7569–7576
Li KK, Pang JC, Ching AK, Wong CK, Kong X, Wang Y et al (2009) miR-124 is frequently down-regulated in medulloblastoma and is a negative regulator of SLC16A1. Hum Pathol 40(9):1234–1243
Pierson J, Hostager B, Fan R, Vibhakar R (2008) Regulation of cyclin dependent kinase 6 by microRNA 124 in medulloblastoma. J Neurooncol 90(1):1–7
Visvanathan J, Lee S, Lee B, Lee JW, Lee SK (2007) The microRNA miR-124 antagonizes the anti-neural REST/SCP1 pathway during embryonic CNS development. Genes Dev 21(7):744–749
Garzia L, Andolfo I, Cusanelli E, Marino N, Petrosino G, De Martino D et al (2009) MicroRNA-199b-5p impairs cancer stem cells through negative regulation of HES1 in medulloblastoma. PLoS ONE 4(3):e4998
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Work in VG Lab is supported by Grants from the National Institutes of Health (R01NS079715 and R03NS077021), Cancer Prevention Research Institute of Texas (CPRIT-RP150301), Rally Foundation for Childhood Cancers, and Addis Faith Foundation.
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Haltom, A.R., Toll, S.A., Cheng, D. et al. Medulloblastoma epigenetics and the path to clinical innovation. J Neurooncol 150, 35–46 (2020). https://doi.org/10.1007/s11060-020-03591-9
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DOI: https://doi.org/10.1007/s11060-020-03591-9