Abstract
Waardenburg syndrome (WS) is a phenotypically and genetically heterogeneous disorder characterised by hearing loss and pigmentary abnormalities. We clarified the clinical and genetic features in 90 Chinese WS probands. Disease-causing variants were detected in 55 probands, for a molecular diagnosis rate of 61%, including cases related to PAX3 (14.4%), MITF (24.4%), and SOX10 (22.2%). Altogether, 48 variants were identified, including 44 single-nucleotide variants and 4 copy number variants. By parental genotyping, de novo variants were observed in 60% of probands and 15.4% of the de novo variation was associated with mosaicism. Statistical analyses revealed that brown freckles on the skin were more frequently seen in probands with MITF variants; patchy depigmented skin, asymmetric hearing loss, and white forelocks occurred more often in cases with PAX3 variants; and congenital inner ear malformations were more common and cochlear hypoplasia III was exclusively observed in those with SOX10 variants. In addition, we found that ranges of W-index values overlapped between WS probands with different genetic variants, and the use of the W-index as a tool for assessing dystopia canthorum may be problematic in Chinese. Herein, we report the spectrum of a cohort of WS probands and elucidate the relationship between genotype and phenotype.
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American Academy of Otolaryngology-Head and Neck Surgery Foundation Annual Meetings (1997). In: Otolaryngology-Head and Neck Surgery 117(2):1–260. San Francisco, California
Baldwin C (1995) Mutations in PAX3 that cause Waardenburg syndrome type 1: ten new mutations and review of the literature. Am J Med Genet. https://doi.org/10.1002/ajmg.1320580205
Baldwin CT, Lipsky NR, Hoth CF, Cohen T, Mamuya W, Milunsky A (1994) Mutations in PAX3 associated with Waardenburg syndrome type I. Hum Hutat 3(3):205. https://doi.org/10.1002/humu.1380030306
Bocangel MAP, Melo US, Alves LU, Pardono E, Lourenco NCV, Marcolino HVC, Mingroni-Netto RC (2018) Waardenburg syndrome: novel mutations in a large Brazilian sample. Eur J Med Genet 61(6):348–354. https://doi.org/10.1016/j.ejmg.2018.01.012
Bondurand N, Dastot-Le Moal F, Stanchina L, Collot N, Baral V, Marlin S, Pingault V (2007) Deletions at the SOX10 gene locus cause Waardenburg syndrome types 2 and 4. Am J Hum Genet 81(6):1169–1185. https://doi.org/10.1086/522090
Brenner L, Burke K, Leduc CA, Guha S, Guo J, Chung WK (2011) Novel splice mutation in microthalmia-associated transcription factor in Waardenburg Syndrome. Genet Test Mol Biomark 15(7–8):525–529. https://doi.org/10.1089/gtmb.2010.0277
Campbell IM, Yuan B, Robberecht C, Pfundt R, Szafranski P, McEntagart ME, Stankiewicz P (2014) Parental somatic mosaicism is underrecognized and influences recurrence risk of genomic disorders. Am J Hum Genet 95(2):173–182. https://doi.org/10.1016/j.ajhg.2014.07.003
Chaoui A, Watanabe Y, Touraine R, Baral V, Goossens M, Pingault V, Bondurand N (2011) Identification and functional analysis of SOX10 missense mutations in different subtypes of Waardenburg syndrome. Hum Mutat 32(12):1436–1449. https://doi.org/10.1002/humu.21583
Destefano AL, Cupples LA, Arnos KS, Asher JH, Baldwin CT, Blanton S, Greenberg J (1998) Correlation between Waardenburg syndrome phenotype and genotype in a population of individuals with identified PAX3mutations. Hum Genet 102(5):499–506. https://doi.org/10.1007/s004390050732
Dourmishev AL, Dourmishev LA, Schwartz RA, Janniger CK (1999) Waardenburg syndrome. Int J Dermatol 38(9):656–663. https://doi.org/10.1046/j.1365-4362.1999.00750.x
Ellard S, Baple EL, Callaway A, Berry I, Forrester N, Turnbull C (2020) ACGS best practice guidelines for variant classification in rare disease. Association for Clinical Genomic Science. https://www.acgs.uk.com/media/11631/uk-practice-guidelinesfor-variant-classification-v4-01-2020
Farrer LA, Grundfast KM, Amos J, Arnos KS, Marazita M (1992) Waardenburg Syndrome (WS) type 1 is caused by defects at multiple loci, one of which is between ALPP and FNI on chromosome 2—first report of the WS consortium. Am J Hum Genet 50(5):902–913. https://doi.org/10.1038/sj.ijo.0803327
Farrer LA, Arnos KS, Asher J, Baldwin CT, Lalwani AK (1994) Locus heterogeneity for Waardenburg syndrome is predictive of clinical subtypes. Am J Hum Genet 55(4):728. https://doi.org/10.1111/j.1749-6632.1993.tb32301.x
Fu XJ, Nozu K, Kaito H, Ninchoji T, Morisada N, Nakanishi K, Iijima K (2016) Somatic mosaicism and variant frequency detected by next-generation sequencing in X-linked Alport syndrome. Eur J Hum Genet 24(3):387–391. https://doi.org/10.1038/ejhg.2015.113
Jalilian N, Tabatabaiefar MA, Bahrami T, Karbasi G, Bahramian MH, Salimpoor A, Noori-Daloii MR (2017) A novel pathogenic variant in the MITF gene segregating with a unique spectrum of ocular findings in an extended Iranian Waardenburg syndrome kindred. Mol Syndromol 8(4):195–200. https://doi.org/10.1159/000476020
Jamuar SS, Walsh CA (2014) Somatic mutations in cerebral cortical malformations. N Engl J Med 371(21):2038. https://doi.org/10.1056/NEJMc1411784
Johnson BE, Mazor T, Hong C, Barnes M, Aihara K, McLean CY, Costello JF (2014) Mutational analysis reveals the origin and therapy-driven evolution of recurrent glioma. Science 343(6167):189–193. https://doi.org/10.1126/science.1239947
Kontorinis G, Goetz F, Lanfermann H, Luytenski S, Giesemann AM (2014) Inner ear anatomy in Waardenburg syndrome: radiological assessment and comparison with normative data. Int J Pediatr Otorhinolaryngol 78(8):1320–1326. https://doi.org/10.1016/j.ijporl.2014.05.020
Lalwani AK, Brister JR, Fex J, Grundfast KM, Ploplis B, San Agustin TB, Wilcox ER (1995) Further elucidation of the genomic structure of PAX3, and identification of two different point mutations within the PAX3 homeobox that cause Waardenburg syndrome type 1 in two families. Am J Hum Genet 56(1):75–83
Li W, Mei L, Chen H, Cai X, Liu Y, Men M, Feng Y (2019) New genotypes and phenotypes in patients with 3 subtypes of Waardenburg syndrome identified by diagnostic next-generation sequencing. Neural Plast 2019:7143458. https://doi.org/10.1155/2019/7143458
Markova TG, Megrelishvilli SM, Shevtsov SP, Shvarts EI (2003) Clinical and molecular genetic investigation of Waardenburg syndrome type 1. Vestn Otorinolaringol, (1):17–19. Russian
Minami SB, Nara K, Mutai H, Morimoto N, Sakamoto H, Takiguchi T, Matsunaga T (2019) A clinical and genetic study of 16 Japanese families with Waardenburg syndrome. Gene 704:86–90. https://doi.org/10.1016/j.gene.2019.04.023
Nayak CS, Glenn I (2003) Worldwide distribution of Waardenburg syndrome. Ann Otol Rhinol Laryngol 112(1):817–820
Nobukuni Y, Watanabe A, Takeda K, Skarka H, Tachibana M (1996) Analyses of loss-of-function mutations of the MITF gene suggest that haploinsufficiency is a cause of Waardenburg syndrome type 2A. Am J Hum Genet 59(1):76–83
Oysu C, Oysu A, Aslan I, Tinaz M (2001) Temporal bone imaging findings in waardenburg’s syndrome. Int J Pediatr Otorhinolaryngol 58(3):215–221. https://doi.org/10.1016/S0165-5876(01)00443-8
Pardono E, van Bever Y, van den Ende J, Havrenne PC, Iughetti P, Maestrelli SR, Otto PA (2003) Waardenburg syndrome: clinical differentiation between types I and II. Am J Med Genet A 117A(3):223–235. https://doi.org/10.1002/ajmg.a.10193
Pingault V, Ente D, Dastot-Le Moal F, Goossens M, Marlin S, Bondurand N (2010) Review and update of mutations causing Waardenburg syndrome. Hum Mutat 31(4):391–406. https://doi.org/10.1002/humu.21211
Pingault V, Bodereau V, Baral V, Marcos S, Watanabe Y, Chaoui A, Bondurand N (2013) Loss-of-function mutations in SOX10 cause Kallmann syndrome with deafness. Am J Hum Genet 92(5):707–724. https://doi.org/10.1016/j.ajhg.2013.03.024
Read AP, Newton VE (1997) Waardenburg syndrome. J Med Genet 34(8):656–665
Sennaroglu L, Saatci I (2002) A new classification for cochleovestibular malformations. Laryngoscope 112(12):2230. https://doi.org/10.1097/00005537-200212000-00019
Song J, Feng Y, Acke FR, Coucke P, Vleminckx K, Dhooge IJ (2016) Hearing loss in Waardenburg syndrome: a systematic review. Clin Genet 89(4):416–425. https://doi.org/10.1111/cge.12631
Sun L, Li X, Shi J, Pang X, Hu Y, Wang X, Yang T (2016) Molecular etiology and genotype-phenotype correlation of Chinese Han deaf patients with type I and type II Waardenburg Syndrome. Sci Rep 6:35498. https://doi.org/10.1038/srep35498
Tang HY, Fang P, Lin JW, Darilek S, Osborne BT, Haymond JA, Alford RL (2015) DNA sequence analysis and genotype-phenotype assessment in 71 patients with syndromic hearing loss or auditory neuropathy. BMJ Open 5(5):e007506–e007506
Tassabehji M, Newton VE, Liu XZ, Brady A, Donnai D, Krajewska-Walasek M (1995) The mutational spectrum in Waardenburg syndrome. Hum Mol Genet 4(11):2131–2137. https://doi.org/10.1093/hmg/4.11.2131
Wang HH, Chen HS, Li HB, Zhang H, Mei LY, He CF, Feng Y (2014) Identification and functional analysis of a novel mutation in the SOX10 gene associated with Waardenburg syndrome type IV. Gene 538(1):36–41. https://doi.org/10.1016/j.gene.2014.01.026
Wang L, Qin L, Li T, Liu H, Ma L, Li W, Liao S (2018) Prenatal diagnosis and genetic counseling for Waardenburg syndrome type I and II in Chinese families. Mol Med Rep 17(1):172–178. https://doi.org/10.3892/mmr.2017.7874
Xu GY, Hao QQ, Zhong LL, Ren W, Yan Y, Liu RY, Yang SM (2016) SOX10 mutation is relevant to inner ear malformation in patients with Waardenburg syndrome. Zhonghua Er Bi Yan Hou Tou Jing Wai Ke Za Zhi 51(11):832–837. https://doi.org/10.3760/cma.j.issn.1673-0860.2016.11.006
Yang S, Dai P, Liu X, Kang D, Yuan H (2013) Genetic and phenotypic heterogeneity in Chinese patients with Waardenburg syndrome type II. PLoS ONE. https://doi.org/10.1371/journal.pone.0077149.g001
Zheng L, Yan Y, Chen X, Zhang C, Zhang Q, Feng X, Hao S (2018) Analysis of SOX10 gene mutation in a family affected with Waardenburg syndrome type II. Zhonghua Yi Xue Yi Chuan Xue Za Zhi 35(1):81–83. https://doi.org/10.3760/cma.j.issn.1003-9406.2018.01.018
Funding
This work was supported by grants from the Project of the Reproductive Health and Serious Birth Defect Prevention Research (National Key Research Project, 2016YFC1000704 2016YFC1000706), National Key Research Project (2017YFC1001804), National Natural Science Foundation of China (81730029, 81873704, and 81870731), Beijing Natural Science Foundation (7191011, 7192234), Project of the National Natural Science Foundation of China (81900953), Natural Science Foundation of Hainan Province (819MS110) and Fostering Funds of Chinese PLA General Hospital for National Distinguished Young Scholar (2017-JQPY-001).
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Study protocols were performed with the approval of the Ethics Committee of the Chinese PLA General Hospital (approval number S2016-103-01).
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Wang, G., Li, X., Gao, X. et al. Analysis of genotype–phenotype relationships in 90 Chinese probands with Waardenburg syndrome. Hum Genet 141, 839–852 (2022). https://doi.org/10.1007/s00439-021-02301-3
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DOI: https://doi.org/10.1007/s00439-021-02301-3