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KDM5 Lysine Demethylases in Pathogenesis, from Basic Science Discovery to the Clinic

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Targeting Lysine Demethylases in Cancer and Other Human Diseases

Part of the book series: Advances in Experimental Medicine and Biology ((AEMB,volume 1433))

Abstract

The histone lysine demethylase 5 (KDM5) family proteins are Fe2+ and α-ketoglutarate-dependent dioxygenases, with jumonji C (JmjC) domain as their catalytic core and several plant homeodomains (PHDs) to bind different histone methylation marks. These enzymes are capable of demethylating tri-, di- and mono-methylated lysine 4 in histone H3 (H3K4me3/2/1), the key epigenetic marks for active chromatin. Thus, this H3K4 demethylase family plays critical roles in cell fate determination during development as well as malignant transformation. KDM5 demethylases have both oncogenic and tumor suppressive functions in a cancer type-dependent manner. In solid tumors, KDM5A/B are generally oncogenic, whereas KDM5C/D have tumor suppressive roles. Their involvement in de-differentiation, cancer metastasis, drug resistance, and tumor immunoevasion indicated that KDM5 family proteins are promising drug targets for cancer therapy. Significant efforts from both academia and industry have led to the development of potent and selective KDM5 inhibitors for preclinical experiments and phase I clinical trials. However, a better understanding of the roles of KDM5 demethylases in different physiological and pathological conditions is critical for further developing KDM5 modulators for clinical applications.

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References

  • Aasland R, Gibson TJ, Stewart AF (1995) The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 20:56–59

    Article  CAS  PubMed  Google Scholar 

  • Agulnik AI, Mitchell MJ, Lerner JL, Woods DR, Bishop CE (1994a) A mouse Y chromosome gene encoded by a region essential for spermatogenesis and expression of male-specific minor histocompatibility antigens. Hum Mol Genet 3:873–878

    Article  CAS  PubMed  Google Scholar 

  • Agulnik AI, Mitchell MJ, Mattei MG, Borsani G, Avner PA, Lerner JL, Bishop CE (1994b) A novel X gene with a widely transcribed Y-linked homologue escapes X-inactivation in mouse and human. Hum Mol Genet 3:879–884

    Article  CAS  PubMed  Google Scholar 

  • Akimoto C, Kitagawa H, Matsumoto T, Kato S (2008) Spermatogenesis-specific association of SMCY and MSH5. Genes Cells 13:623–633

    Article  CAS  PubMed  Google Scholar 

  • Al-Mubarak B, Abouelhoda M, Omar A, AlDhalaan H, Aldosari M, Nester M, Alshamrani HA, El-Kalioby M, Goljan E, Albar R, Subhani S, Tahir A, Asfahani S, Eskandrani A, Almusaiab A, Magrashi A, Shinwari J, Monies D, Al TN (2017) Whole exome sequencing reveals inherited and de novo variants in autism spectrum disorder: a trio study from Saudi families. Sci Rep 7:5679

    Article  PubMed  PubMed Central  Google Scholar 

  • Albert M, Schmitz SU, Kooistra SM, Malatesta M, Morales Torres C, Rekling JC, Johansen JV, Abarrategui I, Helin K (2013) The histone demethylase Jarid1b ensures faithful mouse development by protecting developmental genes from aberrant H3K4me3. PLoS Genet 9:e1003461

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Allis CD, Berger SL, Cote J, Dent S, Jenuwien T, Kouzarides T, Pillus L, Reinberg D, Shi Y, Shiekhattar R, Shilatifard A, Workman J, Zhang Y (2007) New nomenclature for chromatin-modifying enzymes. Cell 131:633–636

    Article  CAS  PubMed  Google Scholar 

  • Arseneault M, Monlong J, Vasudev NS, Laskar RS, Safisamghabadi M, Harnden P, Egevad L, Nourbehesht N, Panichnantakul P, Holcatova I, Brisuda A, Janout V, Kollarova H, Foretova L, Navratilova M, Mates D, Jinga V, Zaridze D, Mukeria A, Jandaghi P, Brennan P, Brazma A, Tost J, Scelo G, Banks RE, Lathrop M, Bourque G, Riazalhosseini Y (2017) Loss of chromosome Y leads to down regulation of KDM5D and KDM6C epigenetic modifiers in clear cell renal cell carcinoma. Sci Rep 7:44876

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Banelli B, Carra E, Barbieri F, Wurth R, Parodi F, Pattarozzi A, Carosio R, Forlani A, Allemanni G, Marubbi D, Florio T, Daga A, Romani M (2015) The histone demethylase KDM5A is a key factor for the resistance to temozolomide in glioblastoma. Cell Cycle (Georgetown, TX) 14:3418–3429

    Article  CAS  Google Scholar 

  • Barrett A, Madsen B, Copier J, Lu PJ, Cooper L, Scibetta AG, Burchell J, Taylor-Papadimitriou J (2002) PLU-1 nuclear protein, which is upregulated in breast cancer, shows restricted expression in normal human adult tissues: a new cancer/testis antigen? Int J Cancer 101:581–588

    Article  CAS  PubMed  Google Scholar 

  • Barski A, Cuddapah S, Cui K, Roh T-Y, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K (2007) High-resolution profiling of histone methylations in the human genome. Cell 129:823–837

    Article  CAS  PubMed  Google Scholar 

  • Benevolenskaya EV, Murray HL, Branton P, Young RA, Kaelin WG Jr (2005) Binding of pRB to the PHD protein RBP2 promotes cellular differentiation. Mol Cell 18:623–635

    Article  CAS  PubMed  Google Scholar 

  • Berger SL (2007) The complex language of chromatin regulation during transcription. Nature 447:407–412

    Article  CAS  PubMed  Google Scholar 

  • Blair LP, Yan Q (2012) Epigenetic mechanisms in commonly occurring cancers. DNA Cell Biol 31(Suppl 1):S49-61

    Article  PubMed  Google Scholar 

  • Blair LP, Cao J, Zou MR, Sayegh J, Yan Q (2011) Epigenetic regulation by lysine demethylase 5 (KDM5) enzymes in cancer. Cancers 3:1383–1404

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Blair LP, Liu Z, Labitigan RL, Wu L, Zheng D, Xia Z, Pearson EL, Nazeer FI, Cao J, Lang SM, Rines RJ, Mackintosh SG, Moore CL, Li W, Tian B, Tackett AJ, Yan Q (2016) KDM5 lysine demethylases are involved in maintenance of 3′UTR length. Sci Adv 2:e1501662

    Article  PubMed  PubMed Central  Google Scholar 

  • Brier AB, Loft A, Madsen JG, Rosengren T, Nielsen R, Schmidt SF, Liu Z, Yan Q, Gronemeyer H, Mandrup S (2016) The KDM5 family is required for activation of pro-proliferative cell cycle genes during adipocyte differentiation. Nucleic Acids Res 45:1743–1759

    Google Scholar 

  • Campos EI, Reinberg D (2009) Histones: annotating chromatin. Annu Rev Genet 43:559–599. 

    Article  CAS  PubMed  Google Scholar 

  • Cao J, Liu Z, Cheung William KC, Zhao M, Chen Sophia Y, Chan Siew W, Booth Carmen J, Nguyen Don X, Yan Q (2014) Histone demethylase RBP2 is critical for breast cancer progression and metastasis. Cell Rep 6:868–877

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Catchpole S, Spencer-Dene B, Hall D, Santangelo S, Rosewell I, Guenatri M, Beatson R, Scibetta AG, Burchell JM, Taylor-Papadimitriou J (2011) PLU-1/JARID1B/KDM5B is required for embryonic survival and contributes to cell proliferation in the mammary gland and in ER+ breast cancer cells. Int J Oncol 38:1267–1277

    CAS  PubMed  Google Scholar 

  • Chan SW, Hong W (2001) Retinoblastoma-binding protein 2 (Rbp2) potentiates nuclear hormone receptor-mediated transcription. J Biol Chem 276:28402–28412

    Article  CAS  PubMed  Google Scholar 

  • Chaturvedi CP, Somasundaram B, Singh K, Carpenedo RL, Stanford WL, Dilworth FJ, Brand M (2012) Maintenance of gene silencing by the coordinate action of the H3K9 methyltransferase G9a/KMT1C and the H3K4 demethylase Jarid1a/KDM5A. Proc Natl Acad Sci USA 109:18845–18850

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Chauvistre H, Shannan B, Daignault-Mill SM, Ju RJ, Picard D, Egetemaier S, Varaljai R, Gibhardt CS, Sechi A, Kaschani F, Keminer O, Stehbens SJ, Liu Q, Yin X, Jeyakumar K, Vogel FCE, Krepler C, Rebecca VW, Kubat L, Lueong SS, Forster J, Horn S, Remke M, Ehrmann M, Paschen A, Becker JC, Helfrich I, Rauh D, Kaiser M, Gul S, Herlyn M, Bogeski I, Rodriguez-Lopez JN, Haass NK, Schadendorf D, Roesch A (2022) Persister state-directed transitioning and vulnerability in melanoma. Nat Commun 13:3055

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Christensen J, Agger K, Cloos PA, Pasini D, Rose S, Sennels L, Rappsilber J, Hansen KH, Salcini AE, Helin K (2007) RBP2 belongs to a family of demethylases, specific for tri-and dimethylated lysine 4 on histone 3. Cell 128:1063–1076

    Article  CAS  PubMed  Google Scholar 

  • Claes S, Devriendt K, Van Goethem G, Roelen L, Meireleire J, Raeymaekers P, Cassiman JJ, Fryns JP (2000) Novel syndromic form of X-linked complicated spastic paraplegia. Am J Med Genet 94:1–4

    Article  CAS  PubMed  Google Scholar 

  • Consortium EP (2012) An integrated encyclopedia of DNA elements in the human genome. Nature 489:57–74

    Google Scholar 

  • Cui Z, Song L, Hou Z, Han Y, Hu Y, Wu Y, Chen W, Mao L (2015) PLU-1/JARID1B overexpression predicts proliferation properties in head and neck squamous cell carcinoma. Oncol Rep 33:2454–2460

    Article  CAS  PubMed  Google Scholar 

  • Dai B, Hu Z, Huang H, Zhu G, Xiao Z, Wan W, Zhang P, Jia W, Zhang L (2014) Overexpressed KDM5B is associated with the progression of glioma and promotes glioma cell growth via down regulating p21. Biochem Biophys Res Commun 454:221–227

    Article  CAS  PubMed  Google Scholar 

  • Dalgliesh GL, Furge K, Greenman C, Chen L, Bignell G, Butler A, Davies H, Edkins S, Hardy C, Latimer C, Teague J, Andrews J, Barthorpe S, Beare D, Buck G, Campbell PJ, Forbes S, Jia M, Jones D, Knott H, Kok CY, Lau KW, Leroy C, Lin ML, McBride DJ, Maddison M, Maguire S, McLay K, Menzies A, Mironenko T, Mulderrig L, Mudie L, O’Meara S, Pleasance E, Rajasingham A, Shepherd R, Smith R, Stebbings L, Stephens P, Tang G, Tarpey PS, Turrell K, Dykema KJ, Khoo SK, Petillo D, Wondergem B, Anema J, Kahnoski RJ, Teh BT, Stratton MR, Futreal PA (2010) Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes. Nature 463:360–363

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dalvi MP, Wang L, Zhong R, Kollipara RK, Park H, Bayo J, Yenerall P, Zhou Y, Timmons BC, Rodriguez-Canales J, Behrens C, Mino B, Villalobos P, Parra ER, Suraokar M, Pataer A, Swisher SG, Kalhor N, Bhanu NV, Garcia BA, Heymach JV, Coombes K, Xie Y, Girard L, Gazdar AF, Kittler R, Wistuba II, Minna JD, Martinez ED (2017) Taxane-platin-resistant lung cancers co-develop hypersensitivity to JumonjiC demethylase inhibitors. Cell Rep 19:1669–1684

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • De Rubeis S, He X, Goldberg AP, Poultney CS, Samocha K, Cicek AE, Kou Y, Liu L, Fromer M, Walker S, Singh T, Klei L, Kosmicki J, Shih-Chen F, Aleksic B, Biscaldi M, Bolton PF, Brownfeld JM, Cai J, Campbell NG, Carracedo A, Chahrour MH, Chiocchetti AG, Coon H, Crawford EL, Curran SR, Dawson G, Duketis E, Fernandez BA, Gallagher L, Geller E, Guter SJ, Hill RS, Ionita-Laza J, Jimenz Gonzalez P, Kilpinen H, Klauck SM, Kolevzon A, Lee I, Lei I, Lei J, Lehtimaki T, Lin CF, Ma’ayan A, Marshall CR, McInnes AL, Neale B, Owen MJ, Ozaki N, Parellada M, Parr JR, Purcell S, Puura K, Rajagopalan D, Rehnstrom K, Reichenberg A, Sabo A, Sachse M, Sanders SJ, Schafer C, Schulte-Ruther M, Skuse D, Stevens C, Szatmari P, Tammimies K, Valladares O, Voran A, Li-San W, Weiss LA, Willsey AJ, Yu TW, Yuen RK, Cook EH, Freitag CM, Gill M, Hultman CM, Lehner T, Palotie A, Schellenberg GD, Sklar P, State MW, Sutcliffe JS, Walsh CA, Scherer SW, Zwick ME, Barett JC, Cutler DJ, Roeder K, Devlin B, Daly MJ, Buxbaum JD (2014) Synaptic, transcriptional and chromatin genes disrupted in autism. Nature 515:209–215

    Article  PubMed  PubMed Central  Google Scholar 

  • Defeo-Jones D, Huang PS, Jones RE, Haskell KM, Vuocolo GA, Hanobik MG, Huber HE, Oliff A (1991) Cloning of cDNAs for cellular proteins that bind to the retinoblastoma gene product. Nature 352:251–254

    Article  CAS  PubMed  Google Scholar 

  • Drelon C, Belalcazar HM, Secombe J (2018) The histone demethylase KDM5 is essential for larval growth in Drosophila. Genetics 209:773–787

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Facompre ND, Harmeyer KM, Sole X, Kabraji S, Belden Z, Sahu V, Whelan K, Tanaka K, Weinstein GS, Montone KT, Roesch A, Gimotty PA, Herlyn M, Rustgi AK, Nakagawa H, Ramaswamy S, Basu D (2016) JARID1B enables transit between distinct states of the stem-like cell population in oral cancers. Can Res 76:5538–5549

    Article  CAS  Google Scholar 

  • Fang L, Zhao J, Wang D, Zhu L, Wang J, Jiang K (2016) Jumonji AT-rich interactive domain 1B overexpression is associated with the development and progression of glioma. Int J Mol Med 38:172–182

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Feng T, Wang Y, Lang Y, Zhang Y (2017) KDM5A promotes proliferation and EMT in ovarian cancer and closely correlates with PTX resistance. Mol Med Rep 16:3573–3580

    Article  CAS  PubMed  Google Scholar 

  • Gale M, Sayegh J, Cao J, Norcia M, Gareiss P, Hoyer D, Merkel JS, Yan Q (2016) Screen-identified selective inhibitor of lysine demethylase 5A blocks cancer cell growth and drug resistance. Oncotarget 7:39931–39944

    Article  PubMed  PubMed Central  Google Scholar 

  • Ge Z, Li W, Wang N, Liu C, Zhu Q, Bjorkholm M, Gruber A, Xu D (2010) Chromatin remodeling: recruitment of histone demethylase RBP2 by Mad1 for transcriptional repression of a Myc target gene, telomerase reverse transcriptase. FASEB J Off Publ Fed Am Soc Exp Biol 24:579–586

    CAS  Google Scholar 

  • Gehling VS, Bellon SF, Harmange JC, LeBlanc Y, Poy F, Odate S, Buker S, Lan F, Arora S, Williamson KE, Sandy P, Cummings RT, Bailey CM, Bergeron L, Mao W, Gustafson A, Liu Y, VanderPorten E, Audia JE, Trojer P, Albrecht BK (2016) Identification of potent, selective KDM5 inhibitors. Bioorg Med Chem Lett 26:4350–4354

    Article  CAS  PubMed  Google Scholar 

  • Gildea JJ, Lopez R, Shearn A (2000) A screen for new trithorax group genes identified little imaginal discs, the Drosophila melanogaster homologue of human retinoblastoma binding protein 2. Genetics 156:645–663

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Gilmore SA, Tam D, Cheung TL, Snyder C, Farand J, Dick R, Matles M, Feng JY, Ramirez R, Li L, Yu H, Xu Y, Barnes D, Czerwieniec G, Brendza KM, Appleby TC, Birkus G, Willkom M, Kobayashi T, Paoli E, Labelle M, Boesen T, Tay CH, Delaney WE, Notte GT, Schmitz U, Feierbach B (2022) Characterization of a KDM5 small molecule inhibitor with antiviral activity against hepatitis B virus. PloS One 17:e0271145

    Google Scholar 

  • Goncalves TF, Goncalves AP, Fintelman Rodrigues N, dos Santos JM, Pimentel MM, Santos-Reboucas CB (2014) KDM5C mutational screening among males with intellectual disability suggestive of X-linked inheritance and review of the literature. Eur J Med Genet 57:138–144

    Article  PubMed  Google Scholar 

  • Greer EL, Maures TJ, Hauswirth AG, Green EM, Leeman DS, Maro GS, Han S, Banko MR, Gozani O, Brunet A (2010) Members of the H3K4 trimethylation complex regulate lifespan in a germline-dependent manner in C. elegans. Nature 466:383–387

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Greer EL, Maures TJ, Ucar D, Hauswirth AG, Mancini E, Lim JP, Benayoun BA, Shi Y, Brunet A (2011) Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans. Nature 479:365–371

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hayakawa T, Ohtani Y, Hayakawa N, Shinmyozu K, Saito M, Ishikawa F, Nakayama J (2007) RBP2 is an MRG15 complex component and down-regulates intragenic histone H3 lysine 4 methylation. Genes Cells 12:811–826

    CAS  PubMed  Google Scholar 

  • He R, Kidder BL (2017) H3K4 demethylase KDM5B regulates global dynamics of transcription elongation and alternative splicing in embryonic stem cells. Nucleic Acids Res. 45:6427–6441

    Google Scholar 

  • Heinemann B, Nielsen JM, Hudlebusch HR, Lees MJ, Larsen DV, Boesen T, Labelle M, Gerlach LO, Birk P, Helin K (2014) Inhibition of demethylases by GSK-J1/J4. Nature 514:E1-2

    Article  CAS  PubMed  Google Scholar 

  • Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD, Barrera LO, Van Calcar S, Qu C, Ching KA, Wang W, Weng Z, Green RD, Crawford GE, Ren B (2007) Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet 39:311

    Article  CAS  PubMed  Google Scholar 

  • Heintzman ND, Hon GC, Hawkins RD, Kheradpour P, Stark A, Harp LF, Ye Z, Lee LK, Stuart RK, Ching CW, Ching KA, Antosiewicz-Bourget JE, Liu H, Zhang X, Green RD, Lobanenkov VV, Stewart R, Thomson JA, Crawford GE, Kellis M, Ren B (2009) Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 459:108–112

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hinohara K, Wu HJ, Vigneau S, McDonald TO, Igarashi KJ, Yamamoto KN, Madsen T, Fassl A, Egri SB, Papanastasiou M, Ding L, Peluffo G, Cohen O, Kales SC, Lal-Nag M, Rai G, Maloney DJ, Jadhav A, Simeonov A, Wagle N, Brown M, Meissner A, Sicinski P, Jaffe JD, Jeselsohn R, Gimelbrant AA, Michor F, Polyak K (2018) KDM5 histone demethylase activity links cellular transcriptomic heterogeneity to therapeutic resistance. Cancer Cell 34:939-953.e939

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ho TH, Choueiri TK, Wang K, Karam JA, Chalmers Z, Frampton G, Elvin JA, Johnson A, Liu X, Lin Y, Joseph RW, Stanton ML, Miller VA, Stephens PJ, Ross JS, Ali SM, Pal SK (2016) Correlation between molecular subclassifications of clear cell renal cell carcinoma and targeted therapy response. Eur Urol Focus 2:204–209

    Article  PubMed  Google Scholar 

  • Horton JR, Engstrom A, Zoeller EL, Liu X, Shanks JR, Zhang X, Johns MA, Vertino PM, Fu H, Cheng X (2016a) Characterization of a linked jumonji domain of the KDM5/JARID1 family of histone H3 lysine 4 demethylases. J Biol Chem 291:2631–2646

    Article  CAS  PubMed  Google Scholar 

  • Horton JR, Liu X, Gale M, Wu L, Shanks JR, Zhang X, Webber PJ, Bell JSK, Kales SC, Mott BT, Rai G, Jansen DJ, Henderson MJ, Urban DJ, Hall MD, Simeonov A, Maloney DJ, Johns MA, Fu H, Jadhav A, Vertino PM, Yan Q, Cheng X (2016b) Structural basis for KDM5A histone lysine demethylase inhibition by diverse compounds. Cell Chem Biol 23:769–781

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Horton JR, Liu X, Wu L, Zhang K, Shanks J, Zhang X, Rai G, Mott BT, Jansen DJ, Kales SC, Henderson MJ, Pohida K, Fang Y, Hu X, Jadhav A, Maloney DJ, Hall MD, Simeonov A, Fu H, Vertino PM, Yan Q, Cheng X (2018a) Insights into the action of inhibitor enantiomers against histone lysine demethylase 5A. J Med Chem 61:3193–3208

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Horton JR, Woodcock CB, Chen Q, Liu X, Zhang X, Shanks J, Rai G, Mott BT, Jansen DJ, Kales SC, Henderson MJ, Cyr M, Pohida K, Hu X, Shah P, Xu X, Jadhav A, Maloney DJ, Hall MD, Simeonov A, Fu H, Vertino PM, Cheng X (2018b) Structure-based engineering of irreversible inhibitors against histone lysine demethylase KDM5A. J Med Chem 61:10588–10601

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hou J, Wu J, Dombkowski A, Zhang K, Holowatyj A, Boerner JL, Yang ZQ (2012) Genomic amplification and a role in drug-resistance for the KDM5A histone demethylase in breast cancer. Am J Transl Res 4:247–256

    CAS  PubMed  PubMed Central  Google Scholar 

  • Hsieh JJ, Chen D, Wang PI, Marker M, Redzematovic A, Chen YB, Selcuklu SD, Weinhold N, Bouvier N, Huberman KH, Bhanot U, Chevinsky MS, Patel P, Pinciroli P, Won HH, You D, Viale A, Lee W, Hakimi AA, Berger MF, Socci ND, Cheng EH, Knox J, Voss MH, Voi M, Motzer RJ (2017) Genomic biomarkers of a randomized trial comparing first-line everolimus and sunitinib in patients with metastatic renal cell carcinoma. Eur Urol 71:405–414

    Article  CAS  PubMed  Google Scholar 

  • Iida T, Itoh Y, Takahashi Y, Yamashita Y, Kurohara T, Miyake Y, Oba M, Suzuki T (2021) Design, synthesis, and biological evaluation of lysine demethylase 5 C degraders. ChemMedChem 16:1609–1618

    Article  CAS  PubMed  Google Scholar 

  • Iossifov I, Ronemus M, Levy D, Wang Z, Hakker I, Rosenbaum J, Yamrom B, Lee YH, Narzisi G, Leotta A, Kendall J, Grabowska E, Ma B, Marks S, Rodgers L, Stepansky A, Troge J, Andrews P, Bekritsky M, Pradhan K, Ghiban E, Kramer M, Parla J, Demeter R, Fulton LL, Fulton RS, Magrini VJ, Ye K, Darnell JC, Darnell RB, Mardis ER, Wilson RK, Schatz MC, McCombie WR, Wigler M (2012) De novo gene disruptions in children on the autistic spectrum. Neuron 74:285–299

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Iossifov I, O’Roak BJ, Sanders SJ, Ronemus M, Krumm N, Levy D, Stessman HA, Witherspoon KT, Vives L, Patterson KE, Smith JD, Paeper B, Nickerson DA, Dea J, Dong S, Gonzalez LE, Mandell JD, Mane SM, Murtha MT, Sullivan CA, Walker MF, Waqar Z, Wei L, Willsey AJ, Yamrom B, Lee YH, Grabowska E, Dalkic E, Wang Z, Marks S, Andrews P, Leotta A, Kendall J, Hakker I, Rosenbaum J, Ma B, Rodgers L, Troge J, Narzisi G, Yoon S, Schatz MC, Ye K, McCombie WR, Shendure J, Eichler EE, State MW, Wigler M (2014) The contribution of de novo coding mutations to autism spectrum disorder. Nature 515:216–221

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Iwase S, Lan F, Bayliss P, de la Torre-Ubieta L, Huarte M, Qi HH, Whetstine JR, Bonni A, Roberts TM, Shi Y (2007) The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases. Cell 128:1077–1088

    Article  CAS  PubMed  Google Scholar 

  • Iwase S, Brookes E, Agarwal S, Badeaux AI, Ito H, Vallianatos CN, Tomassy GS, Kasza T, Lin G, Thompson A, Gu L, Kwan KY, Chen C, Sartor MA, Egan B, Xu J, Shi Y (2016) A mouse model of X-linked intellectual disability associated with impaired removal of histone methylation. Cell Rep 14:1000–1009

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jensen LR, Amende M, Gurok U, Moser B, Gimmel V, Tzschach A, Janecke AR, Tariverdian G, Chelly J, Fryns JP, Van Esch H, Kleefstra T, Hamel B, Moraine C, Gecz J, Turner G, Reinhardt R, Kalscheuer VM, Ropers HH, Lenzner S (2005) Mutations in the JARID1C gene, which is involved in transcriptional regulation and chromatin remodeling, cause X-linked mental retardation. Am J Hum Genet 76:227–236

    Article  CAS  PubMed  Google Scholar 

  • Johansson C, Velupillai S, Tumber A, Szykowska A, Hookway ES, Nowak RP, Strain-Damerell C, Gileadi C, Philpott M, Burgess-Brown N, Wu N, Kopec J, Nuzzi A, Steuber H, Egner U, Badock V, Munro S, LaThangue NB, Westaway S, Brown J, Athanasou N, Prinjha R, Brennan PE, Oppermann U (2016) Structural analysis of human KDM5B guides histone demethylase inhibitor development. Nat Chem Biol 12:539–545

    Article  CAS  PubMed  Google Scholar 

  • Kidder BL, Hu G, Yu ZX, Liu C, Zhao K (2013) Extended self-renewal and accelerated reprogramming in the absence of Kdm5b. Mol Cell Biol 33:4793–4810

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kidder BL, Hu G, Zhao K (2014) KDM5B focuses H3K4 methylation near promoters and enhancers during embryonic stem cell self-renewal and differentiation. Genome Biol 15:R32

    Article  PubMed  PubMed Central  Google Scholar 

  • Klein BJ, Piao L, Xi Y, Rincon-Arano H, Rothbart SB, Peng D, Wen H, Larson C, Zhang X, Zheng X, Cortazar MA, Pena PV, Mangan A, Bentley DL, Strahl BD, Groudine M, Li W, Shi X, Kutateladze TG (2014) The histone-H3K4-specific demethylase KDM5B binds to its substrate and product through distinct PHD fingers. Cell Rep 6:325–335

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Klose RJ, Kallin EM, Zhang Y (2006) JmjC-domain-containing proteins and histone demethylation. Nat Rev Genet 7:715–727

    Article  CAS  PubMed  Google Scholar 

  • Klose RJ, Yan Q, Tothova Z, Yamane K, Erdjument-Bromage H, Tempst P, Gilliland DG, Zhang Y, Kaelin WG (2007) The retinoblastoma binding protein RBP2 is an H3K4 demethylase. Cell 128:889–900

    Article  CAS  PubMed  Google Scholar 

  • Koch CM, Andrews RM, Flicek P, Dillon SC, Karaoz U, Clelland GK, Wilcox S, Beare DM, Fowler JC, Couttet P, James KD, Lefebvre GC, Bruce AW, Dovey OM, Ellis PD, Dhami P, Langford CF, Weng Z, Birney E, Carter NP, Vetrie D, Dunham I (2007) The landscape of histone modifications across 1% of the human genome in five human cell lines. Genome Res 17:691–707

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Komura K, Jeong SH, Hinohara K, Qu F, Wang X, Hiraki M, Azuma H, Lee GS, Kantoff PW, Sweeney CJ (2016) Resistance to docetaxel in prostate cancer is associated with androgen receptor activation and loss of KDM5D expression. Proc Natl Acad Sci USA 113:6259–6264

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kruidenier L, Chung CW, Cheng Z, Liddle J, Che K, Joberty G, Bantscheff M, Bountra C, Bridges A, Diallo H, Eberhard D, Hutchinson S, Jones E, Katso R, Leveridge M, Mander PK, Mosley J, Ramirez-Molina C, Rowland P, Schofield CJ, Sheppard RJ, Smith JE, Swales C, Tanner R, Thomas P, Tumber A, Drewes G, Oppermann U, Patel DJ, Lee K, Wilson DM (2012) A selective jumonji H3K27 demethylase inhibitor modulates the proinflammatory macrophage response. Nature 488:404–408

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kuo YT, Liu YL, Adebayo BO, Shih PH, Lee WH, Wang LS, Liao YF, Hsu WM, Yeh CT, Lin CM (2015) JARID1B expression plays a critical role in chemoresistance and stem cell-like phenotype of neuroblastoma cells. PLoS ONE 10:e0125343

    Article  PubMed  PubMed Central  Google Scholar 

  • Lauberth SM, Nakayama T, Wu X, Ferris AL, Tang Z, Hughes SH, Roeder RG (2013) H3K4me3 interactions with TAF3 regulate preinitiation complex assembly and selective gene activation. Cell 152:1021–1036

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lebrun N, Mehler-Jacob C, Poirier K, Zordan C, Lacombe D, Carion N, Billuart P, Bienvenu T (2018) Novel KDM5B splice variants identified in patients with developmental disorders: functional consequences. Gene 679:305–313

    Article  CAS  PubMed  Google Scholar 

  • Lee MG, Norman J, Shilatifard A, Shiekhattar R (2007) Physical and functional association of a trimethyl H3K4 demethylase and Ring6a/MBLR, a polycomb-like protein. Cell 128:877–887

    Article  CAS  PubMed  Google Scholar 

  • Lee N, Erdjument-Bromage H, Tempst P, Jones RS, Zhang Y (2009) The H3K4 demethylase lid associates with and inhibits histone deacetylase Rpd3. Mol Cell Biol 29:1401–1410

    Article  CAS  PubMed  Google Scholar 

  • Li L, Greer C, Eisenman RN, Secombe J (2010) Essential functions of the histone demethylase lid. PLoS Genet 6:e1001221–e1001221

    Article  PubMed  PubMed Central  Google Scholar 

  • Li Q, Shi L, Gui B, Yu W, Wang J, Zhang D, Han X, Yao Z, Shang Y (2011) Binding of the JmjC demethylase JARID1B to LSD1/NuRD suppresses angiogenesis and metastasis in breast cancer cells by repressing chemokine CCL14. Can Res 71:6899–6908

    Article  CAS  Google Scholar 

  • Li H, Wawrose JS, Gooding WE, Garraway LA, Lui VW, Peyser ND, Grandis JR (2014) Genomic analysis of head and neck squamous cell carcinoma cell lines and human tumors: a rational approach to preclinical model selection. Mol Cancer Res MCR 12:571–582

    Article  CAS  PubMed  Google Scholar 

  • Li N, Dhar SS, Chen TY, Kan PY, Wei Y, Kim JH, Chan CH, Lin HK, Hung MC, Lee MG (2016) JARID1D is a suppressor and prognostic marker of prostate cancer invasion and metastasis. Can Res 76:831–843

    Article  CAS  Google Scholar 

  • Li Y, Liu S, Zhang Y, Gao Q, Sun W, Fu L, Cao J (2018) Histone demethylase JARID1B regulates proliferation and migration of pulmonary arterial smooth muscle cells in mice with chronic hypoxia-induced pulmonary hypertension via nuclear factor-kappa B (NFkB). Cardiovasc Pathol 37:8–14

    Article  CAS  PubMed  Google Scholar 

  • Liang G, Klose RJ, Gardner KE, Zhang Y (2007) Yeast Jhd2p is a histone H3 Lys4 trimethyl demethylase. Nat Struct Mol Biol 14:243–245

    Article  CAS  PubMed  Google Scholar 

  • Liang J, Zhang B, Labadie S, Ortwine DF, Vinogradova M, Kiefer JR, Gehling VS, Harmange JC, Cummings R, Lai T, Liao J, Zheng X, Liu Y, Gustafson A, Van der Porten E, Mao W, Liederer BM, Deshmukh G, Classon M, Trojer P, Dragovich PS, Murray L (2016) Lead optimization of a pyrazolo[1,5-a]pyrimidin-7(4H)-one scaffold to identify potent, selective and orally bioavailable KDM5 inhibitors suitable for in vivo biological studies. Bioorg Med Chem Lett 26:4036–4041

    Article  CAS  PubMed  Google Scholar 

  • Liang J, Labadie S, Zhang B, Ortwine DF, Patel S, Vinogradova M, Kiefer JR, Mauer T, Gehling VS, Harmange J-C, Cummings R, Lai T, Liao J, Zheng X, Liu Y, Gustafson A, Van der Porten E, Mao W, Liederer BM, Deshmukh G, An L, Ran Y, Classon M, Trojer P, Dragovich PS, Murray L (2017) From a novel HTS hit to potent, selective, and orally bioavailable KDM5 inhibitors. Bioorg Med Chem Lett 27:2974–2981

    Article  CAS  PubMed  Google Scholar 

  • Liao L, Liu ZZ, Langbein L, Cai W, Cho E-A, Na J, Niu X, Jiang W, Zhong Z, Cai WL, Jagannathan G, Dulaimi E, Testa JR, Uzzo RG, Wang Y, Stark GR, Sun J, Peiper S, Xu Y, Yan Q, Yang H (2018) Multiple tumor suppressors regulate a HIF-dependent negative feedback loop via ISGF3 in human clear cell renal cancer. eLife 7:e37925

    Google Scholar 

  • Liefke R, Oswald F, Alvarado C, Ferres-Marco D, Mittler G, Rodriguez P, Dominguez M, Borggrefe T (2010) Histone demethylase KDM5A is an integral part of the core Notch-RBP-J repressor complex. Genes Dev 24:590–601

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lin W, Cao J, Liu J, Beshiri ML, Fujiwara Y, Francis J, Cherniack AD, Geisen C, Blair LP, Zou MR, Shen X, Kawamori D, Liu Z, Grisanzio C, Watanabe H, Minamishima YA, Zhang Q, Kulkarni RN, Signoretti S, Rodig SJ, Bronson RT, Orkin SH, Tuck DP, Benevolenskaya EV, Meyerson M, Kaelin WG, Yan Q (2011) Loss of the retinoblastoma binding protein 2 (RBP2) histone demethylase suppresses tumorigenesis in mice lacking Rb1 or Men1. Proc Natl Acad Sci 108:13379–13386

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Liu X, Secombe J (2015) The histone demethylase KDM5 activates gene expression by recognizing chromatin context through its PHD reader motif. Cell Rep 13:2219–2231

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Liu X, Zhang SM, McGeary MK, Krykbaeva I, Lai L, Jansen DJ, Kales SC, Simeonov A, Hall MD, Kelly DP, Bosenberg MW, Yan Q (2019) KDM5B promotes drug resistance by regulating melanoma-propagating cell subpopulations. Mol Cancer Ther 18:706–717

    Article  CAS  PubMed  Google Scholar 

  • Liu H, Lin J, Zhou W, Moses R, Dai Z, Kossenkov AV, Drapkin R, Bitler BG, Karakashev S, Zhang R (2022a) KDM5A inhibits antitumor immune responses through down regulation of the antigen-presentation pathway in ovarian cancer. Cancer Immunol Res 10:1028–1038

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Liu X, Wang J, Boyer JA, Gong W, Zhao S, Xie L, Wu Q, Zhang C, Jain K, Guo Y, Rodriguez J, Li M, Uryu H, Liao C, Hu L, Zhou J, Shi X, Tsai YH, Yan Q, Luo W, Chen X, Strahl BD, von Kriegsheim A, Zhang Q, Wang GG, Baldwin AS, Zhang Q (2022b) Histone H3 proline 16 hydroxylation regulates mammalian gene expression. Nat Genet 54:1721–1735

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lloret-Llinares M, Carré C, Vaquero A, de Olano N, Azorín F (2008) Characterization of Drosophila melanogaster JmjC+N histone demethylases. Nucleic Acids Res 36:2852–2863

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Loft A, Brier A-SB, Nielsen R, Schmidt SF, Rosengren T, Mandrup S, Madsen Jesper GS, Yan Q, Liu Z, Gronemeyer H (2016) The KDM5 family is required for activation of pro-proliferative cell cycle genes during adipocyte differentiation. Nucleic Acids Res 45:1743–1759

    PubMed Central  Google Scholar 

  • Lu PJ, Sundquist K, Baeckstrom D, Poulsom R, Hanby A, Meier-Ewert S, Jones T, Mitchell M, Pitha-Rowe P, Freemont P, Taylor-Papadimitriou J (1999) A novel gene (PLU-1) containing highly conserved putative DNA/chromatin binding motifs is specifically up-regulated in breast cancer. J Biol Chem 274:15633–15645

    Article  CAS  PubMed  Google Scholar 

  • Lu C, Ward PS, Kapoor GS, Rohle D, Turcan S, Abdel-Wahab O, Edwards CR, Khanin R, Figueroa ME, Melnick A, Wellen KE, O’Rourke DM, Berger SL, Chan TA, Levine RL, Mellinghoff IK, Thompson CB (2012) IDH mutation impairs histone demethylation and results in a block to cell differentiation. Nature 483:474–478

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Maggi EC, Trillo-Tinoco J, Struckhoff AP, Vijayaraghavan J, Del Valle L, Crabtree JS (2016) Retinoblastoma-binding protein 2 (RBP2) is frequently expressed in neuroendocrine tumors and promotes the neoplastic phenotype. Oncogenesis 5:e257

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • McBrayer SK, Olenchock BA, DiNatale GJ, Shi DD, Khanal J, Jennings RB, Novak JS, Oser MG, Robbins AK, Modiste R, Bonal D, Moslehi J, Bronson RT, Neuberg D, Nguyen QD, Signoretti S, Losman JA, Kaelin WG Jr (2018) Autochthonous tumors driven by Rb1 loss have an ongoing requirement for the RBP2 histone demethylase. Proc Natl Acad Sci USA 115:E3741-e3748

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Mishra S, Van Rechem C, Pal S, Clarke TL, Chakraborty D, Mahan SD, Black JC, Murphy SE, Lawrence MS, Daniels DL, Whetstine JR (2018) Cross-talk between lysine-modifying enzymes controls site-specific DNA amplifications. Cell 174:803-817.e816

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Mitra D, Das PM, Huynh FC, Jones FE (2011) Jumonji/ARID1 B (JARID1B) protein promotes breast tumor cell cycle progression through epigenetic repression of microRNA let-7e. J Biol Chem 286:40531–40535

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Najmabadi H, Hu H, Garshasbi M, Zemojtel T, Abedini SS, Chen W, Hosseini M, Behjati F, Haas S, Jamali P, Zecha A, Mohseni M, Puttmann L, Vahid LN, Jensen C, Moheb LA, Bienek M, Larti F, Mueller I, Weissmann R, Darvish H, Wrogemann K, Hadavi V, Lipkowitz B, Esmaeeli-Nieh S, Wieczorek D, Kariminejad R, Firouzabadi SG, Cohen M, Fattahi Z, Rost I, Mojahedi F, Hertzberg C, Dehghan A, Rajab A, Banavandi MJ, Hoffer J, Falah M, Musante L, Kalscheuer V, Ullmann R, Kuss AW, Tzschach A, Kahrizi K, Ropers HH (2011) Deep sequencing reveals 50 novel genes for recessive cognitive disorders. Nature 478:57–63

    Article  CAS  PubMed  Google Scholar 

  • Nie Z, Shi L, Lai C, O’Connell SM, Xu J, Stansfield RK, Hosfield DJ, Veal JM, Stafford JA (2018) Structure-based design and discovery of potent and selective KDM5 inhibitors. Bioorg Med Chem Lett 28:1490–1494

    Article  CAS  PubMed  Google Scholar 

  • Nishibuchi G, Shibata Y, Hayakawa T, Hayakawa N, Ohtani Y, Sinmyozu K, Tagami H, Nakayama J (2014) Physical and functional interactions between the histone H3K4 demethylase KDM5A and the nucleosome remodeling and deacetylase (NuRD) complex. J Biol Chem 289:28956–28970

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Niu X, Zhang T, Liao L, Zhou L, Lindner DJ, Zhou M, Rini B, Yan Q, Yang H (2011) The von Hippel-Lindau tumor suppressor protein regulates gene expression and tumor growth through histone demethylase JARID1C. Oncogene 31:776

    Article  PubMed  PubMed Central  Google Scholar 

  • Nowak RP, Tumber A, Johansson C, Che KH, Brennan P, Owen D, Oppermann U (2016) Advances and challenges in understanding histone demethylase biology. Curr Opin Chem Biol 33:151–159

    Article  CAS  PubMed  Google Scholar 

  • Ohguchi H, Park PMC, Wang T, Gryder BE, Ogiya D, Kurata K, Zhang X, Li D, Pei C, Masuda T, Johansson C, Wimalasena VK, Kim Y, Hino S, Usuki S, Kawano Y, Samur MK, Tai YT, Munshi NC, Matsuoka M, Ohtsuki S, Nakao M, Minami T, Lauberth S, Khan J, Oppermann U, Durbin AD, Anderson KC, Hideshima T, Qi J (2021) Lysine demethylase 5A is required for MYC driven transcription in multiple myeloma. Blood Cancer Discov 2:370–387

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Oser MG, Sabet AH, Gao W, Chakraborty AA, Schinzel AC, Jennings RB, Fonseca R, Bonal DM, Booker MA, Flaifel A, Novak JS, Christensen CL, Zhang H, Herbert ZT, Tolstorukov MY, Buss EJ, Wong KK, Bronson RT, Nguyen QD, Signoretti S, Kaelin WG Jr (2019) The KDM5A/RBP2 histone demethylase represses NOTCH signaling to sustain neuroendocrine differentiation and promote small cell lung cancer tumorigenesis. Genes Dev 33:1718–1738

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Outchkourov NS, Muino JM, Kaufmann K, van Ijcken WF, Groot Koerkamp MJ, van Leenen D, de Graaf P, Holstege FC, Grosveld FG, Timmers HT (2013) Balancing of histone H3K4 methylation states by the Kdm5c/SMCX histone demethylase modulates promoter and enhancer function. Cell Rep 3:1071–1079

    Article  CAS  PubMed  Google Scholar 

  • Pasini D, Hansen KH, Christensen J, Agger K, Cloos PA, Helin K (2008) Coordinated regulation of transcriptional repression by the RBP2 H3K4 demethylase and polycomb-repressive complex 2. Genes Dev 22:1345–1355

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Patsialou A, Wilsker D, Moran E (2005) DNA-binding properties of ARID family proteins. Nucleic Acids Res 33:66–80

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Peach SE, Rudomin EL, Udeshi ND, Carr SA, Jaffe JD (2012) Quantitative assessment of chromatin immuno precipitation grade antibodies directed against histone modifications reveals patterns of co-occurring marks on histone protein molecules. Mol Cell Proteomics MCP 11:128–137

    Article  CAS  PubMed  Google Scholar 

  • Peng D, Lin B, Xie M, Zhang P, Guo Q, Li Q, Gu Q, Yang S, Sen L (2021) Histone demethylase KDM5A promotes tumorigenesis of osteosarcoma tumor. Cell Death Discov 7:9

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Pennacchio LA, Bickmore W, Dean A, Nobrega MA, Bejerano G (2013) Enhancers: five essential questions. Nat Rev Genet 14:288–295

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Perinchery G, Sasaki M, Angan A, Kumar V, Carroll P, Dahiya R (2000) Deletion of Y-chromosome specific genes in human prostate cancer. J Urol 163:1339–1342

    Article  CAS  PubMed  Google Scholar 

  • Plch J, Hrabeta J, Eckschlager T (2019) KDM5 demethylases and their role in cancer cell chemoresistance. Int J Cancer 144:221–231

    Article  CAS  PubMed  Google Scholar 

  • Ptaschinski C, Mukherjee S, Moore ML, Albert M, Helin K, Kunkel SL, Lukacs NW (2015) RSV-induced H3K4 demethylase KDM5B leads to regulation of dendritic cell-derived innate cytokines and exacerbates pathogenesis in vivo. PLoS Pathog 11:e1004978

    Article  PubMed  PubMed Central  Google Scholar 

  • Ren Z, Kim A, Huang YT, Pi WC, Gong W, Yu X, Qi J, Jin J, Cai L, Roeder RG, Chen WY, Wang GG (2022) A PRC2-Kdm5b axis sustains tumorigenicity of acute myeloid leukemia. Proc Natl Acad Sci USA 119:e2122940119

    Google Scholar 

  • Roesch A, Fukunaga-Kalabis M, Schmidt EC, Zabierowski SE, Brafford PA, Vultur A, Basu D, Gimotty P, Vogt T, Herlyn M (2010) A temporarily distinct subpopulation of slow-cycling melanoma cells is required for continuous tumor growth. Cell 141:583–594

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Roesch A, Vultur A, Bogeski I, Wang H, Zimmermann KM, Speicher D, Korbel C, Laschke MW, Gimotty PA, Philipp SE, Krause E, Patzold S, Villanueva J, Krepler C, Fukunaga-Kalabis M, Hoth M, Bastian BC, Vogt T, Herlyn M (2013) Overcoming intrinsic multidrug resistance in melanoma by blocking the mitochondrial respiratory chain of slow-cycling JARID1B(high) cells. Cancer Cell 23:811–825

    Article  CAS  PubMed  Google Scholar 

  • Rondinelli B, Rosano D, Antonini E, Frenquelli M, Montanini L, Huang D, Segalla S, Yoshihara K, Amin SB, Lazarevic D, The BT, Verhaak RG, Futreal PA, Di Croce L, Chin L, Cittaro D, Tonon G (2015) Histone demethylase JARID1C inactivation triggers genomic instability in sporadic renal cancer. J Clin Investig 125:4625–4637

    Article  PubMed  PubMed Central  Google Scholar 

  • Ruthenburg AJ, Allis CD, Wysocka J (2007) Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark. Mol Cell 25:15–30

    Article  CAS  PubMed  Google Scholar 

  • Sanchez R, Zhou M-M (2011) The PHD finger: a versatile epigenome reader. Trends Biochem Sci 36:364–372

    CAS  PubMed  PubMed Central  Google Scholar 

  • Santos-Rosa H, Schneider R, Bannister AJ, Sherriff J, Bernstein BE, Emre NC, Schreiber SL, Mellor J, Kouzarides T (2002) Active genes are tri-methylated at K4 of histone H3. Nature 419:407–411

    Article  CAS  PubMed  Google Scholar 

  • Sayegh J, Cao J, Zou MR, Morales A, Blair LP, Norcia M, Hoyer D, Tackett AJ, Merkel JS, Yan Q (2013) Identification of small molecule inhibitors of Jumonji AT-rich interactive domain 1B (JARID1B) histone demethylase by a sensitive high throughput screen. J Biol Chem 288:9408–9417

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Scandaglia M, Lopez-Atalaya JP, Medrano-Fernandez A, Lopez-Cascales MT, Del Blanco B, Lipinski M, Benito E, Olivares R, Iwase S, Shi Y, Barco A (2017) Loss of Kdm5c causes spurious transcription and prevents the fine-tuning of activity-regulated enhancers in neurons. Cell Rep 21:47–59

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Schmitz SU, Albert M, Malatesta M, Morey L, Johansen JV, Bak M, Tommerup N, Abarrategui I, Helin K (2011) Jarid1b targets genes regulating development and is involved in neural differentiation. EMBO J 30:4586–4600

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Scibetta AG, Santangelo S, Coleman J, Hall D, Chaplin T, Copier J, Catchpole S, Burchell J, Taylor-Papadimitriou J (2007) Functional analysis of the transcription repressor PLU-1/JARID1B. Mol Cell Biol 27:7220–7235

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Secombe J, Li L, Carlos L, Eisenman RN (2007) The trithorax group protein lid is a trimethyl histone H3K4 demethylase required for dMyc-induced cell growth. Genes Dev 21:537–551

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Seward DJ, Cubberley G, Kim S, Schonewald M, Zhang L, Tripet B, Bentley DL (2007) Demethylation of trimethylated histone H3 Lys4 in vivo by JARID1 JmjC proteins. Nat Struct Mol Biol 14:240–242

    Article  CAS  PubMed  Google Scholar 

  • Shannan B, Matschke J, Chauvistre H, Vogel F, Klein D, Meier F, Westphal D, Bruns J, Rauschenberg R, Utikal J, Forschner A, Berking C, Terheyden P, Dabrowski E, Gutzmer R, Rafei-Shamsabadi D, Meiss F, Heinzerling L, Zimmer L, Livingstone E, Varaljai R, Hoewner A, Horn S, Klode J, Stuschke M, Scheffler B, Marchetto A, Sannino G, Grunewald TGP, Schadendorf D, Jendrossek V, Roesch A (2019) Sequence-dependent cross-resistance of combined radiotherapy plus BRAF(V600E) inhibition in melanoma. Eur J Cancer (Oxford, England, 1990) 109:137–153

    Google Scholar 

  • Sharma SV, Lee DY, Li B, Quinlan MP, Takahashi F, Maheswaran S, McDermott U, Azizian N, Zou L, Fischbach MA, Wong KK, Brandstetter K, Wittner B, Ramaswamy S, Classon M, Settleman J (2010) A chromatin-mediated reversible drug-tolerant state in cancer cell subpopulations. Cell 141:69–80

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Shen X, Zhuang Z, Zhang Y, Chen Z, Shen L, Pu W, Chen L, Xu Z (2015) JARID1B modulates lung cancer cell proliferation and invasion by regulating p53 expression. Tumour Biol J Int Soc Oncodev Biol Med 36:7133–7142

    Article  CAS  Google Scholar 

  • Shen H, Xu W, Guo R, Rong B, Gu L, Wang Z, He C, Zheng L, Hu X, Hu Z, Shao ZM, Yang P, Wu F, Shi YG, Shi Y, Lan F (2016) Suppression of enhancer overactivation by a RACK7-histone demethylase complex. Cell 165:331–342

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Shi Y, Lan F, Matson C, Mulligan P, Whetstine JR, Cole PA, Casero RA, Shi Y (2004) Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 119:941–953

    Article  CAS  PubMed  Google Scholar 

  • Sims RJ, Millhouse S, Chen C-F, Lewis BA, Erdjument-Bromage H, Tempst P, Manley JL, Reinberg D (2007) Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. Mol Cell 28:665–676

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Stein J, Majores M, Rohde M, Lim S, Schneider S, Krappe E, Ellinger J, Dietel M, Stephan C, Jung K, Perner S, Kristiansen G, Kirfel J (2014) KDM5C is overexpressed in prostate cancer and is a prognostic marker for prostate-specific antigen-relapse following radical prostatectomy. Am J Pathol 184:2430–2437

    Article  CAS  PubMed  Google Scholar 

  • Tahiliani M, Mei P, Fang R, Leonor T, Rutenberg M, Shimizu F, Li J, Rao A, Shi Y (2007) The histone H3K4 demethylase SMCX links REST target genes to X-linked mental retardation. Nature 447:601–605

    Article  CAS  PubMed  Google Scholar 

  • Tang K, Jiao LM, Qi YR, Wang TC, Li YL, Xu JL, Wang ZW, Yu B, Liu HM, Zhao W (2022) Discovery of novel pyrazole-based KDM5B inhibitor TK-129 and its protective effects on myocardial remodeling and fibrosis. J Med Chem 65:12979–13000

    Article  CAS  PubMed  Google Scholar 

  • Tarhonskaya H, Nowak RP, Johansson C, Szykowska A, Tumber A, Hancock RL, Lang P, Flashman E, Oppermann U, Schofield CJ, Kawamura A (2017) Studies on the interaction of the histone demethylase KDM5B with tricarboxylic acid cycle intermediates. J Mol Biol 429:2895–2906

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Taylor-Papadimitriou J, Burchell J (2017) JARID1/KDM5 demethylases as cancer targets? Expert Opin Ther Targets 21:5–7

    Article  PubMed  Google Scholar 

  • Teng YC, Lee CF, Li YS, Chen YR, Hsiao PW, Chan MY, Lin FM, Huang HD, Chen YT, Jeng YM, Hsu CH, Yan Q, Tsai MD, Juan LJ (2013) Histone demethylase RBP2 promotes lung tumorigenesis and cancer metastasis. Can Res 73:4711–4721

    Article  CAS  Google Scholar 

  • Torres IO, Kuchenbecker KM, Nnadi CI, Fletterick RJ, Kelly MJ, Fujimori DG (2015) Histone demethylase KDM5A is regulated by its reader domain through a positive-feedback mechanism. Nat Commun 6:6204

    Article  CAS  PubMed  Google Scholar 

  • Trewick SC, McLaughlin PJ, Allshire RC (2005) Methylation: lost in hydroxylation? EMBO Rep 6:315–320

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tsukada Y, Fang J, Erdjument-Bromage H, Warren ME, Borchers CH, Tempst P, Zhang Y (2006) Histone demethylation by a family of JmjC domain-containing proteins. Nature 439:811–816

    Article  CAS  PubMed  Google Scholar 

  • Tu S, Bulloch EMM, Yang L, Ren C, Huang W-C, Hsu P-H, Chen C-H, Liao C-L, Yu H-M, Lo W-S, Freitas MA, Tsai M-D (2007) Identification of histone demethylases in Saccharomyces cerevisiae. J Biol Chem 282:14262–14271

    Article  CAS  PubMed  Google Scholar 

  • Tu S, Teng YC, Yuan C, Wu YT, Chan MY, Cheng AN, Lin PH, Juan LJ, Tsai MD (2008) The ARID domain of the H3K4 demethylase RBP2 binds to a DNA CCGCCC motif. Nat Struct Mol Biol 15:419–421

    Article  CAS  PubMed  Google Scholar 

  • Tumber A, Nuzzi A, Hookway ES, Hatch SB, Velupillai S, Johansson C, Kawamura A, Savitsky P, Yapp C, Szykowska A, Wu N, Bountra C, Strain-Damerell C, Burgess-Brown NA, Ruda GF, Fedorov O, Munro S, England KS, Nowak RP, Schofield CJ, La Thangue NB, Pawlyn C, Davies F, Morgan G, Athanasou N, Muller S, Oppermann U, Brennan PE (2017) Potent and selective KDM5 inhibitor stops cellular demethylation of H3K4me3 at transcription start sites and proliferation of MM1S myeloma cells. Cell Chem Biol 24:371–380

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ugur FS, Kelly MJS, Fujimori DG (2023) Chromatin sensing by the auxiliary domains of KDM5C regulates its demethylase activity and is disrupted by X-linked intellectual disability mutations. J Mol Biol 435:167913

    Article  CAS  PubMed  Google Scholar 

  • van Oevelen C, Wang J, Asp P, Yan Q, Kaelin WG Jr, Kluger Y, Dynlacht BD (2008) A role for mammalian Sin3 in permanent gene silencing. Mol Cell 32:359–370

    Article  PubMed  PubMed Central  Google Scholar 

  • Varaljai R, Islam AB, Beshiri ML, Rehman J, Lopez-Bigas N, Benevolenskaya EV (2015) Increased mitochondrial function downstream from KDM5A histone demethylase rescues differentiation in pRB-deficient cells. Genes Dev 29:1817–1834

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Vazquez-Rodriguez S, Wright M, Rogers CM, Cribbs AP, Velupillai S, Philpott M, Lee H, Dunford JE, Huber KVM, Robers MB, Vasta JD, Thezenas ML, Bonham S, Kessler B, Bennett J, Fedorov O, Raynaud F, Donovan A, Blagg J, Bavetsias V, Oppermann U, Bountra C, Kawamura A, Brennan PE (2019) Design, synthesis and characterization of covalent KDM5 inhibitors. Angew Chem Int Ed Engl 58:515–519

    Article  CAS  PubMed  Google Scholar 

  • Vermeulen M, Mulder KW, Denissov S, Pijnappel WW, van Schaik FM, Varier RA, Baltissen MP, Stunnenberg HG, Mann M, Timmers HT (2007) Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4. Cell 131:58–69

    Article  CAS  PubMed  Google Scholar 

  • Vicent GP, Nacht AS, Zaurin R, Font-Mateu J, Soronellas D, Le Dily F, Reyes D, Beato M (2013) Unliganded progesterone receptor-mediated targeting of an RNA-containing repressive complex silences a subset of hormone-inducible genes. Genes Dev 27:1179–1197

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Vinogradova M, Gehling VS, Gustafson A, Arora S, Tindell CA, Wilson C, Williamson KE, Guler GD, Gangurde P, Manieri W, Busby J, Flynn EM, Lan F, Kim HJ, Odate S, Cochran AG, Liu Y, Wongchenko M, Yang Y, Cheung TK, Maile TM, Lau T, Costa M, Hegde GV, Jackson E, Pitti R, Arnott D, Bailey C, Bellon S, Cummings RT, Albrecht BK, Harmange JC, Kiefer JR, Trojer P, Classon M (2016) An inhibitor of KDM5 demethylases reduces survival of drug-tolerant cancer cells. Nat Chem Biol 12:531–538

    Article  CAS  PubMed  Google Scholar 

  • Wang GG, Song J, Wang Z, Dormann HL, Casadio F, Li H, Luo JL, Patel DJ, Allis CD (2009) Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger. Nature 459:847–851

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wang L, Chang J, Varghese D, Dellinger M, Kumar S, Best AM, Ruiz J, Bruick R, Pena-Llopis S, Xu J, Babinski DJ, Frantz DE, Brekken RA, Quinn AM, Simeonov A, Easmon J, Martinez ED (2013) A small molecule modulates Jumonji histone demethylase activity and selectively inhibits cancer growth. Nat Commun 4:2035

    Article  PubMed  Google Scholar 

  • Wang L, Mao Y, Du G, He C, Han S (2015a) Overexpression of JARID1B is associated with poor prognosis and chemotherapy resistance in epithelial ovarian cancer. Tumour Biol J Int Soc Oncodev Biol Med 36:2465–2472

    Article  CAS  Google Scholar 

  • Wang Q, Wei J, Su P, Gao P (2015b) Histone demethylase JARID1C promotes breast cancer metastasis cells via down regulating BRMS1 expression. Biochem Biophys Res Commun 464:659–666

    Article  CAS  PubMed  Google Scholar 

  • Wang Z, Tang F, Qi G, Yuan S, Zhang G, Tang B, He S (2015c) KDM5B is overexpressed in gastric cancer and is required for gastric cancer cell proliferation and metastasis. Am J Cancer Res 5:87–100

    PubMed  Google Scholar 

  • Wang C, Wang J, Li J, Hu G, Shan S, Li Q, Zhang X (2016a) KDM5A controls bone morphogenic protein 2-induced osteogenic differentiation of bone mesenchymal stem cells during osteoporosis. Cell Death Dis 7:e2335

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wang D, Han S, Peng R, Jiao C, Wang X, Yang X, Yang R, Li X (2016b) Depletion of histone demethylase KDM5B inhibits cell proliferation of hepatocellular carcinoma by regulation of cell cycle checkpoint proteins p15 and p27. J Exp Clin Cancer Res CR 35:37

    Article  CAS  PubMed  Google Scholar 

  • Wang Z-Y, Yang J, Liu C-K, Shen S-Q (2017) High expression of retinoblastoma-binding protein 2 (RBP2) in patients with hepatocellular carcinoma and its prognostic significance. Med Sci Monit Int Med J Exp Clin Res 23:2736–2744

    CAS  Google Scholar 

  • Wang L, Gao Y, Zhang G, Li D, Wang Z, Zhang J, Hermida LC, He L, Wang Z, Si J, Geng S, Ai R, Ning F, Cheng C, Deng H, Dimitrov DS, Sun Y, Huang Y, Wang D, Hu X, Wei Z, Wang W, Liao X (2020) Enhancing KDM5A and TLR activity improves the response to immune checkpoint blockade. Sci Transl Med 12:eaax2282

    Google Scholar 

  • Wang H, Fan Z, Shliaha PV, Miele M, Hendrickson RC, Jiang X, Helin K (2023) H3K4me3 regulates RNA polymerase II promoter-proximal pause-release. Nature 615:339–348

    Google Scholar 

  • Westaway SM, Preston AG, Barker MD, Brown F, Brown JA, Campbell M, Chung CW, Diallo H, Douault C, Drewes G, Eagle R, Gordon L, Haslam C, Hayhow TG, Humphreys PG, Joberty G, Katso R, Kruidenier L, Leveridge M, Liddle J, Mosley J, Muelbaier M, Randle R, Rioja I, Rueger A, Seal GA, Sheppard RJ, Singh O, Taylor J, Thomas P, Thomson D, Wilson DM, Lee K, Prinjha RK (2016a) Cell penetrant inhibitors of the KDM4 and KDM5 families of histone lysine demethylases. 1. 3-Amino-4-pyridine carboxylate derivatives. J Med Chem 59:1357–1369

    Article  CAS  PubMed  Google Scholar 

  • Westaway SM, Preston AG, Barker MD, Brown F, Brown JA, Campbell M, Chung CW, Drewes G, Eagle R, Garton N, Gordon L, Haslam C, Hayhow TG, Humphreys PG, Joberty G, Katso R, Kruidenier L, Leveridge M, Pemberton M, Rioja I, Seal GA, Shipley T, Singh O, Suckling CJ, Taylor J, Thomas P, Wilson DM, Lee K, Prinjha RK (2016b) Cell penetrant inhibitors of the KDM4 and KDM5 families of histone lysine demethylases. 2. Pyrido[3,4-d]pyrimidin-4(3H)-one derivatives. J Med Chem 59:1370–1387

    Article  CAS  PubMed  Google Scholar 

  • Wilsker D, Patsialou A, Dallas PB, Moran E (2002) ARID proteins: a diverse family of DNA binding proteins implicated in the control of cell growth, differentiation, and development. Cell Growth Differ Mol Biol J Am Assoc Cancer Res 13:95–106

    CAS  Google Scholar 

  • Wong PP, Miranda F, Chan KV, Berlato C, Hurst HC, Scibetta AG (2012) Histone demethylase KDM5B collaborates with TFAP2C and Myc to repress the cell cycle inhibitor p21(cip) (CDKN1A). Mol Cell Biol 32:1633–1644

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Workman P, Travers J (2010) Drug-tolerant insurgents. Nature 464:844–845

    Article  CAS  PubMed  Google Scholar 

  • Wu L, Cao J, Cai WL, Lang SM, Horton JR, Jansen DJ, Liu ZZ, Chen JF, Zhang M, Mott BT, Pohida K, Rai G, Kales SC, Henderson MJ, Hu X, Jadhav A, Maloney DJ, Simeonov A, Zhu S, Iwasaki A, Hall MD, Cheng X, Shadel GS, Yan Q (2018) KDM5 histone demethylases repress immune response via suppression of STING. PLoS Biol 16:e2006134

    Article  PubMed  PubMed Central  Google Scholar 

  • Xiang Y, Zhu Z, Han G, Ye X, Xu B, Peng Z, Ma Y, Yu Y, Lin H, Chen AP, Chen CD (2007) JARID1B is a histone H3 lysine 4 demethylase up-regulated in prostate cancer. Proc Natl Acad Sci USA 104:19226–19231

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Xiao M, Yang H, Xu W, Ma S, Lin H, Zhu H, Liu L, Liu Y, Yang C, Xu Y, Zhao S, Ye D, Xiong Y, Guan KL (2012) Inhibition of alpha-KG-dependent histone and DNA demethylases by fumarate and succinate that are accumulated in mutations of FH and SDH tumor suppressors. Genes Dev 26:1326–1338

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Xie L, Pelz C, Wang W, Bashar A, Varlamova O, Shadle S, Impey S (2011) KDM5B regulates embryonic stem cell self-renewal and represses cryptic intragenic transcription. EMBO J 30:1473–1484

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Xu W, Zhou B, Zhao X, Zhu L, Xu J, Jiang Z, Chen D, Wei Q, Han M, Feng L, Wang S, Wang X, Zhou J, Jin H (2018) KDM5B demethylates H3K4 to recruit XRCC1 and promote chemoresistance. Int J Biol Sci 14:1122–1132

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Xu S, Wang S, Xing S, Yu D, Rong B, Gao H, Sheng M, Tan Y, Sun X, Wang K, Xue K, Shi Z, Lan F (2021) KDM5A suppresses PML-RARalpha target gene expression and APL differentiation through repressing H3K4me2. Blood Adv 5:3241–3253

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Xue S, Lam YM, He Z, Zheng Y, Li L, Zhang Y, Li C, Mbadhi MN, Zheng L, Cheng Z, Liu Y, Wang X, Chan LC, Ng RK, Zhang J (2020) Histone lysine demethylase KDM5B maintains chronic myeloid leukemia via multiple epigenetic actions. Exp Hematol 82:53–65

    Article  CAS  PubMed  Google Scholar 

  • Yamamoto S, Wu Z, Russnes HG, Takagi S, Peluffo G, Vaske C, Zhao X, Moen Vollan HK, Maruyama R, Ekram MB, Sun H, Kim JH, Carver K, Zucca M, Feng J, Almendro V, Bessarabova M, Rueda OM, Nikolsky Y, Caldas C, Liu XS, Polyak K (2014) JARID1B is a luminal lineage-driving oncogene in breast cancer. Cancer Cell 25:762–777

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Yang GJ, Zhu MH, Lu XJ, Liu YJ, Lu JF, Leung CH, Ma DL, Chen J (2021) The emerging role of KDM5A in human cancer. J Hematol Oncol 14:30

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Yao W, Peng Y, Lin D (2010) The flexible loop L1 of the H3K4 demethylase JARID1B ARID domain has a crucial role in DNA-binding activity. Biochem Biophys Res Commun 396:323–328

    Article  CAS  PubMed  Google Scholar 

  • Yheskel M, Sidoli S, Secombe J (2023) Proximity labeling reveals a new in vivo network of interactors for the histone demethylase KDM5. Epigenetics Chromatin 16:8

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Yu X, Chen H, Zuo C, Jin X, Yin Y, Wang H, Jin M, Ozato K, Xu S (2017) Chromatin remodeling: demethylating H3K4me3 of type I IFNs gene by Rbp2 through interacting with Piasy for transcriptional attenuation. FASEB J Official Publ Fed Am Soc Exp Biol 32:552–567

    Google Scholar 

  • Zamurrad S, Hatch HAM, Drelon C, Belalcazar HM, Secombe J (2018) A drosophila model of intellectual disability caused by mutations in the histone demethylase KDM5. Cell Rep 22:2359–2369

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Zeng J, Ge Z, Wang L, Li Q, Wang N, Bjorkholm M, Jia J, Xu D (2010) The histone demethylase RBP2 Is overexpressed in gastric cancer and its inhibition triggers senescence of cancer cells. Gastroenterology 138:981–992

    Article  CAS  PubMed  Google Scholar 

  • Zhan D, Zhang Y, Xiao P, Zheng X, Ruan M, Zhang J, Chen A, Zou Y, Chen Y, Huang G, Hu S, Wang QF, Zhu X (2018) Whole exome sequencing identifies novel mutations of epigenetic regulators in chemorefractory pediatric acute myeloid leukemia. Leuk Res 65:20–24

    Article  CAS  PubMed  Google Scholar 

  • Zhang Y, Liang J, Li Q (2014a) Coordinated regulation of retinoic acid signaling pathway by KDM5B and polycomb repressive complex 2. J Cell Biochem 115:1528–1538

    Article  CAS  PubMed  Google Scholar 

  • Zhang Y, Yang H, Guo X, Rong N, Song Y, Xu Y, Lan W, Zhang X, Liu M, Xu Y, Cao C (2014b) The PHD1 finger of KDM5B recognizes unmodified H3K4 during the demethylation of histone H3K4me2/3 by KDM5B. Protein Cell 5:837–850

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Zhang SM, Cai WL, Liu X, Thakral D, Luo J, Chan LH, McGeary MK, Song E, Blenman KRM, Micevic G, Jessel S, Zhang Y, Yin M, Booth CJ, Jilaveanu LB, Damsky W, Sznol M, Kluger HM, Iwasaki A, Bosenberg MW, Yan Q (2021) KDM5B promotes immune evasion by recruiting SETDB1 to silence retroelements. Nature 598:682–687

    Article  PubMed  PubMed Central  Google Scholar 

  • Zhao D, Zhang Q, Liu Y, Li X, Zhao K, Ding Y, Li Z, Shen Q, Wang C, Li N, Cao X (2016) H3K4me3 demethylase Kdm5a Is required for NK cell activation by associating with p50 to suppress SOCS1. Cell Rep 15:288–299

    Article  CAS  PubMed  Google Scholar 

  • Zheng YC, Chang J, Wang LC, Ren HM, Pang JR, Liu HM (2019) Lysine demethylase 5B (KDM5B): a potential anti-cancer drug target. Eur J Med Chem 161:131–140

    Article  CAS  PubMed  Google Scholar 

  • Zheng H, Wu L, Xiao Q, Meng X, Hafiz A, Yan Q, Lu R, Cao J (2023) Epigenetically suppressed tumor cell intrinsic STING promotes tumor immune escape. Biomed Pharmacother 157:114033

    Article  CAS  PubMed  Google Scholar 

  • Zou MR, Cao J, Liu Z, Huh SJ, Polyak K, Yan Q (2014) Histone demethylase jumonji AT-rich interactive domain 1B (JARID1B) controls mammary gland development by regulating key developmental and lineage specification genes. J Biol Chem 289:17620–17633

    Article  CAS  PubMed  PubMed Central  Google Scholar 

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Acknowledgements

This work was partially supported by a start-up package from ShanghaiTech University (to S.M.Z.), Shanghai Pujiang Talent Program (No. 22PJ1411100) (to S.M.Z.), a start-up fund provided by Rutgers Cancer Institute of New Jersey and Cancer Center Support Grant P30CA072720 (to J.C.), and National Institutes of Health Awards R01CA272578 (to J.C.), R01CA237586 (to Q.Y.) and P50CA121974 (to Q.Y.).

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Correspondence to Shang-Min Zhang , Jian Cao or Qin Yan .

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Zhang, SM., Cao, J., Yan, Q. (2023). KDM5 Lysine Demethylases in Pathogenesis, from Basic Science Discovery to the Clinic. In: Yan, Q. (eds) Targeting Lysine Demethylases in Cancer and Other Human Diseases. Advances in Experimental Medicine and Biology, vol 1433. Springer, Cham. https://doi.org/10.1007/978-3-031-38176-8_6

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