Skip to main content

High-Resolution Melt Curve Analysis in Cancer Mutation Screen

  • Protocol
  • First Online:
Clinical Applications of PCR

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1392))

  • 4423 Accesses

Abstract

High-resolution melt (HRM) curve analysis is a PCR-based assay that identifies sequence alterations based on subtle variations in the melting curves of mutated versus wild-type DNA sequences. HRM analysis is a high-throughput, sensitive, and efficient alternative to Sanger sequencing and is used to assess for mutations in clinically important genes involved in cancer diagnosis. The technique involves PCR amplification of a target sequence in the presence of a fluorescent double-stranded DNA (dsDNA) binding dye, melting of the fluorescent amplicons, and subsequent interpretation of melt curve profiles.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Nguyen-Dumont T, Calvez-Kelm FL, Forey N et al (2009) Description and validation of high-throughput simultaneous genotyping and mutation scanning by high-resolution melting curve analysis. Hum Mutat 30:884–890

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  2. Erali M, Voelkerding KV, Wittwer CT (2008) High resolution melting applications for clinical laboratory medicine. Exp Mol Pathol 85:50–58

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  3. Vossen RH, Aten E, Roos A et al (2009) High-resolution melting analysis (HRMA): more than just sequence variant screening. Hum Mutat 30:860–866

    Article  CAS  PubMed  Google Scholar 

  4. Montgomery J, Wittwer CT, Palais R et al (2007) Simultaneous mutation scanning and genotyping by high-resolution DNA melting analysis. Nat Protoc 2:59–66

    Article  CAS  PubMed  Google Scholar 

  5. Smith BL, Lu CP, Alvarado Bremer JR (2010) High-resolution melting analysis (HRMA): a highly sensitive inexpensive genotyping alternative for population studies. Mol Ecol Resour 10:193–196

    Article  CAS  PubMed  Google Scholar 

  6. Wittwer CT (2009) High-resolution DNA melting analysis: advancements and limitations. Hum Mutat 30:857–859

    Article  CAS  PubMed  Google Scholar 

  7. Patel KP, Barkoh BA, Chen Z et al (2011) Diagnostic testing for IDH1 and IDH2 variants in acute myeloid leukemia an algorithmic approach using high-resolution melting curve analysis. J Mol Diagn 13:678–686

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  8. Singh RR, Bains A, Patel KP et al (2012) Detection of high-frequency and novel DNMT3A mutations in acute myeloid leukemia by high-resolution melting curve analysis. J Mol Diagn 14:336–345

    Article  CAS  PubMed  Google Scholar 

  9. Cammenga J, Horn S, Bergholz U et al (2005) Extracellular KIT receptor mutants, commonly found in core binding factor AML, are constitutively active and respond to imatinib mesylate. Blood 106:3958–3961

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Keyur P. Patel M.D., Ph.D. .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2016 Springer Science+Business Media New York

About this protocol

Cite this protocol

Mehrotra, M., Patel, K.P. (2016). High-Resolution Melt Curve Analysis in Cancer Mutation Screen. In: Luthra, R., Singh, R., Patel, K. (eds) Clinical Applications of PCR. Methods in Molecular Biology, vol 1392. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3360-0_7

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-3360-0_7

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-3358-7

  • Online ISBN: 978-1-4939-3360-0

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics