Abstract
Inositol 1,4,5-trisphosphate (IP3) receptors (IP3Rs) are IP3-gated Ca2+ release channels localized on intracellular Ca2+ stores and play a role in the generation of complex patterns of intracellular Ca2+ signals. We show herein experimental protocols for the identification of associating proteins of IP3R isoforms from various cells and tissues using affinity column chromatography and for the specific knockdown of the expression of IP3R isoforms and their associating proteins using RNA interference. These methods will provide clues to understand the exact nature of how the signaling complex contributes to the generation of spatio-temporal patterns of intracellular Ca2+ signals.
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References
Bezprozvanny, I. (2005) The inositol 1,4,5-trisphosphate receptors. Cell Calcium 38, 261–272.
Foskett, J. K., White, C., Cheung, K. H. and Mak, D. O. (2007) Inositol trisphosphate receptor Ca2+ release channels. Physiol. Rev. 87, 593–658.
Mikoshiba, K. (2007) IP3 receptor/Ca2+ channel: from discovery to new signaling concepts. J. Neurochem. 102, 1426–1446.
Berridge, M. J. (1993) Inositol trisphosphate and calcium signalling. Nature 361, 315–325.
Iwai, M., Tateishi, Y., Hattori, M., Mizutani, A., Nakamura, T., Futatsugi, A., Inoue, T., Furuichi, T., Michikawa, T. and Mikoshiba, K. (2005) Molecular cloning of mouse type 2 and type 3 inositol 1,4,5-trisphosphate receptors and identification of a novel type 2 receptor splice variant. J. Biol. Chem. 280, 10305–10317.
Tu, H., Wang, Z., Nosyreva, E., De Smedt, H. and Bezprozvanny, I. (2005) Functional characterization of mammalian inositol 1,4,5-trisphosphate receptor isoforms. Biophys. J. 88, 1046–1055.
Newton, C. L., Mignery, G. A. and Sudhof, T. C. (1994) Co-expression in vertebrate tissues and cell lines of multiple inositol 1,4,5-trisphosphate (InsP3) receptors with distinct affinities for InsP3. J. Biol. Chem. 269, 28613–28619.
Choe, C. U. and Ehrlich, B. E. (2006) The inositol 1,4,5-trisphosphate receptor (IP3R) and its regulators: sometimes good and sometimes bad teamwork. Sci. STKE 2006, re15.
Ando, H., Mizutani, A., Matsu-ura, T. and Mikoshiba, K. (2003) IRBIT, a novel inositol 1,4,5-trisphosphate (IP3) receptor-binding protein, is released from the IP3 receptor upon IP3 binding to the receptor. J. Biol. Chem. 278, 10602–10612.
Higo, T., Hattori, M., Nakamura, T., Natsume, T., Michikawa, T. and Mikoshiba, K. (2005) Subtype-specific and ER lumenal environment-dependent regulation of inositol 1,4,5-trisphosphate receptor type 1 by ERp44. Cell 120, 85–98.
Ando, H., Mizutani, A., Kiefer, H., Tsuzurugi, D., Michikawa, T. and Mikoshiba, K. (2006) IRBIT suppresses IP3 receptor activity by competing with IP3 for the common binding site on the IP3 receptor. Mol. Cell 22, 795–806.
Hattori, M., Suzuki, A. Z., Higo, T., Miyauchi, H., Michikawa, T., Nakamura, T., Inoue, T. and Mikoshiba, K. (2004) Distinct roles of inositol 1,4,5-trisphosphate receptor types 1 and 3 in Ca2+ signaling. J. Biol. Chem. 279, 11967–11975.
Furuichi, T., Yoshikawa, S., Miyawaki, A., Wada, K., Maeda, N. and Mikoshiba, K. (1989) Primary structure and functional expression of the inositol 1,4,5-trisphosphate-binding protein P400. Nature 342, 32–38.
Dykxhoorn, D. M. and Lieberman, J. (2005) The silent revolution: RNA interference as basic biology, research tool, and therapeutic. Ann. Rev. Med. 56, 401–423.
Scherer, L. J. and Rossi, J. J. (2003) Approaches for the sequence-specific knockdown of mRNA. Nat. Biotechnol. 21, 1457–1465.
Kawaai, K., Ishida, S., Matsu-ura, T., Kuroda, Y., Ogawa, N., Tashiro, T., Enomoto, M., Hisatsune, C. and Mikoshiba, K. (2008) Optimization of transfection conditions for gene expression, siRNA knock-down, and live cell imaging using FuGene HD Transfection reagent. Biochemica 280, 21–24.
Mendes, C. C., Gomes, D. A., Thompson, M., Souto, N. C., Goes, T. S., Goes, A. M., Rodrigues, M. A., Gomez, M. V., Nathanson, M. H. and Leite, M. F. (2005) The type III inositol 1,4,5-trisphosphate receptor preferentially transmits apoptotic Ca2+ signals into mitochondria. J. Biol. Chem. 280, 40892–40900.
Galeotti, N., Quattrone, A., Vivoli, E., Bartolini, A. and Ghelardini, C. (2007) Knockdown of the type 2 and 3 inositol 1,4,5-trisphosphate receptors suppresses muscarinic antinociception in mice. Neuroscience 149, 409–420.
Acknowledgments
This work was supported by grants from the Education, Culture, Sports, and Technology of Japan.
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Mizutani, A., Kawaai, K., Hisatsune, C., Ando, H., Michikawa, T., Mikoshiba, K. (2010). Isolation of Inositol 1,4,5-Trisphosphate Receptor-Associating Proteins and Selective Knockdown Using RNA Interference. In: Barker, C. (eds) Inositol Phosphates and Lipids. Methods in Molecular Biology, vol 645. Humana Press. https://doi.org/10.1007/978-1-60327-175-2_9
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DOI: https://doi.org/10.1007/978-1-60327-175-2_9
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