Collection
Special Issue: A Tribute to Prof. Herman J.C. Berendsen
- Submission status
- Closed
A tribute to Prof Herman J.C. Berendsen (1934-2019), a great teacher, mentor, researcher and one of the founders of MD simulation of biological molecules.
Papers will be rapidly peer reviewed (please suggest reviewers with institutional email addresses).
Any questions to:
Larry Berliner: berliner@du.edu
Jan Post: jfmpost@gmail.com
David van der Spoel: david.vanderspoel@icm.uu.se
Editors
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Jan Post &
Jan Post
Jan Post earned a MSc in physical chemistry at Groningen University in 1975. At Leeds University (UK) he learned solid state NMR techniques. 1981 PhD with Herman Berendsen. Post-doc at Carnegie Mellon University on protein NMR relaxation. Brain tissues and intracellular cations at the University of Pittsburgh. 1987 assistant professor at UTMB Galveston where he developed a program in biomedical NMR (cells & tissues) and collaborated in the founding of the UTMB NMR Center. Adjunct faculty at Rice University bioengineering program. 1998 he left UTMB and taught gifted students and working adults until he retired in 2018.
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David van der Spoel
David van der Spoel studied physics and engineering at the University of Groningen. After finishing his undergraduate studies in 1988 he started working as a software developer in the group of Herman Berendsen. The objective was to develop the GROMACS software for parallel molecular dynamics simulations. From 1992, David continued as a graduate student in the Berendsen group where he defended his Ph.D. thesis in 1996. In 1997 he moved to Uppsala where he was appointed Professor of Computational Molecular Biophysics in 2008. His current research focuses on development of the Alexandria force field for halo-organic compounds.
Articles (12 in this collection)
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gmXtal: Cooking Crystals with GROMACS
Authors
- Pavel Buslaev
- Gerrit Groenhof
- Content type: OriginalPaper
- Open Access
- Published: 25 August 2023
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How Azide Ion/Hydrazoic Acid Passes Through Biological Membranes: An Experimental and Computational Study
Authors (first, second and last of 5)
- Simona Lojevec Hartl
- Simon Žakelj
- Janez Mavri
- Content type: OriginalPaper
- Open Access
- Published: 08 June 2023
- Pages: 229 - 238
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Thermodynamic Evolution of a Metamorphic Protein: A Theoretical-Computational Study of Human Lymphotactin
Authors (first, second and last of 4)
- Laura Zanetti-Polzi
- Isabella Daidone
- Andrea Amadei
- Content type: OriginalPaper
- Open Access
- Published: 26 May 2023
- Pages: 219 - 228
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Simulations of Amyloid-Forming Peptides in the Crystal State
Authors
- A. Najla Hosseini
- David van der Spoel
- Content type: OriginalPaper
- Open Access
- Published: 05 May 2023
- Pages: 192 - 204
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Herman Berendsen and Water: Personal Memories
Authors
- Piet Jan Andree
- Content type: ReviewPaper
- Published: 03 May 2023
- Pages: 156 - 158
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A Retrospective on the Development of Methods for the Analysis of Protein Conformational Ensembles
Authors
- Steven Hayward
- Content type: ReviewPaper
- Open Access
- Published: 19 April 2023
- Pages: 181 - 191
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Herman J. C. Berendsen, a Very Modest Genius
Authors
- K. Hallenga
- Content type: OriginalPaper
- Published: 13 April 2023
- Pages: 159 - 161
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Rehydration Post-orientation: Investigating Field-Induced Structural Changes via Computational Rehydration
Authors (first, second and last of 4)
- Maxim N. Brodmerkel
- Emiliano De Santis
- Erik G. Marklund
- Content type: OriginalPaper
- Open Access
- Published: 08 April 2023
- Pages: 205 - 218
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The Magical Power of Water: A Reminiscence of Herman Johan Christiaan Berendsen
Authors
- Edward T. Samulski
- Content type: OriginalPaper
- Published: 29 March 2023
- Pages: 168 - 176
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Biophysical Chemistry in Groningen – A Personal Note
Authors
- Marcus A. Hemminga
- Content type: ReviewPaper
- Published: 16 March 2023
- Pages: 162 - 164
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Herman Berendsen, an Unforgettable Man
Authors
- Anton J. M. Schoot Uiterkamp
- Content type: OriginalPaper
- Open Access
- Published: 08 March 2023
- Pages: 177 - 180