Skip to main content

Characterizing an Anoxic Habitat: Sulfur Bacteria in a Meromictic Alpine Lake

  • Chapter
  • First Online:
Anoxia

Abstract

Although a relatively high diversity of eukaryotic organisms exists in anoxic habitats, these extreme environments are mainly characterized by their prokaryotic communities. The meromictic alpine Lake Alat in Bavaria, Germany exhibits a stable chemocline throughout the year. In contrast to many other freshwater habitats, the purple sulfur bacteria bloom is a thick, well-defined layer. The different bacterial assemblages involved in the sulfur cycle create a stable and permanent environment. Chemical and thermal stratification make this lake a very unique lentic habitat. The thermo- and the chemocline were described by measurements of physical parameters, such as temperature, oxygen, and conductivity, as well as the chemobiological measurements of particulate organic carbon and nitrogen concentrations. With the analyses of environmental DNA samples, we studied the bacterial diversity within this thermocline. Universal bacterial 16S rDNA as well as specific Chromatiaceae 16S rDNA PCR were cloned. Analyses showed that almost all randomly chosen clones were among γ-proteobacteria more specifically; sequences are most similar to the family Chromatiaceae, but few δ-proteobacteria occur.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

 References

  • Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402

    Article  PubMed  CAS  Google Scholar 

  • Bosshard PP, Stettler R, Bachofen R (2000) Seasonal and spatial community dynamics in the meromictic Lake Cadagno. Arch Microbiol 174:168–174

    Article  PubMed  CAS  Google Scholar 

  • Brümmer F, Fritz GB, Pfannkuchen M (in prep) DOBB: Water sampling device for SCUBA divers to obtain in situ data

    Google Scholar 

  • Del Don C, Hanselmann KW, Peduzzi R, Bachofen R (2001) The meromictic alpine Lake Cadagno: orographical and biogeochemical description. Aquat Sci 63:70–90

    Article  Google Scholar 

  • Esteban GF, Finlay BJ, Embley TM (1993) New species double the diversity of anaerobic ciliates in a Spanish lake. FEMS Microbiol Lett 109:93–100

    Article  Google Scholar 

  • Esteban GF, Finlay BJ, Clarke KJ (2009) Sequestered organelles sustain aerobic microbial life in anoxic environments. Environ Microbiol 11:544–550

    Article  PubMed  Google Scholar 

  • Falk M (2011) Physico-chemical stratification and stability of the meromictic lake Alat in Bavaria, Fuessen. BSc. Thesis Geosciences, Freie Universität. Berlin, pp 36

    Google Scholar 

  • Guerrero R, Montesinos E, Pedros A, Esteve I, Mas J, Van Gemerden H, Hofman PAG, Bakker JF (1985) Phototrophic sulfur bacteria in two Spanish lakes vertical distribution and limiting factors. Limnol Oceanogr 30:919–931

    Article  CAS  Google Scholar 

  • Imhoff J (2006a) The phototrophic alpha-proteobacteria. In: Dworkin M, Falkow S, Rosenberg E, Schleifer K-H, Stackebrandt E (eds.) The prokaryotes: a handbook on the biology of bacteria. Springer, New York

    Google Scholar 

  • Imhoff J (2006b) The Chromatiaceae. In: Dworkin M, Falkow S, Rosenberg E, Schleifer K-H, Stackebrandt E (eds.) The prokaryotes: a handbook on the biology of bacteria. Springer, New York

    Google Scholar 

  • Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar, Buchner A, Lai T, Steppi S, Jobb G, Förster W, Brettske I, Gerber S, Ginhart AW, Gross O, Grumann S, Hermann S, Jost R, König A, Liss T, Lüßmann R, May M, Nonhoff B, Reichel B, Strehlow R, Stamatakis A, Stuckmann N, Vilbig A, Lenke M, Ludwig T, Bode A, Schleifer K-H (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32:1363–1371

    Article  PubMed  CAS  Google Scholar 

  • Overmann J, Tilzer MM (1989) Control of primary productivity and the significance of photosynthetic bacteria in a meromictic kettle lake. Mittlerer Buchensee, West-Germany. Aquat Sci 51:261–278

    Article  Google Scholar 

  • Overmann J, Beatty JT, Hall KJ, Pfennig N, Northcote TG (1991) Characterization of a dense, purple sulfur bacterial layer in a meromictic salt lake. Limnol Oceanogr 36:846–859

    Article  CAS  Google Scholar 

  • Overmann J, Cypionka H, Pfennig N (1992) An extremely low-light-adapted phototrophic sulfur bacterium from the Black Sea. Limnol Oceanogr 37:150–155

    Article  CAS  Google Scholar 

  • Peduzzi S, Tonolla M, Hahn D (2003a) Vertical distribution of sulfate-reducing bacteria in the chemocline of Lake Cadagno, Switzerland, over an annual cycle. Aquat Microb Ecol 30:295–302

    Article  Google Scholar 

  • Peduzzi S, Tonolla M, Hahn D (2003b) Isolation and characterization of aggregate-forming sulfate-reducing and purple sulfur bacteria from the chemocline of meromictic Lake Cadagno, Switzerland. FEMS Microbiol Ecol 45:29–37

    Article  PubMed  CAS  Google Scholar 

  • Peplies J, Kottmann R, Ludwig W, Glockner FO (2008) A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes. Syst Appl Microbiol 31:251–257

    Article  PubMed  CAS  Google Scholar 

  • Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glockner FO (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35:1–9

    Article  Google Scholar 

  • Sacca A, Borrego CM, Renda R, Triado-Margarit X, Bruni V, Guglielmo L (2009) Predation impact of ciliated and flagellated protozoa during a summer bloom of brown sulfur bacteria in a meromictic coastal lake. FEMS Microbiol Ecol 70:42–53

    Article  PubMed  CAS  Google Scholar 

  • Schöner R, Scholz H, Krumm H (2003) Die mittelalterliche Eisengewinnung im Füssener Land (Ostallgäu und Außerfern): neue Ergebnisse zum Abbau und zur Verhüttung der Eisenerze aus dem Wettersteinkalk. Arch Lagerst forsch Geol B 24:193–218

    Google Scholar 

  • Stöck T, Brümmer F, Foissner W (2007) Evidence for local ciliate endemism in an Alpine Anoxic lake. Microb Ecol 54:478–486

    Article  Google Scholar 

  • Struck U, Falk M, Altenbach AV, Pollehne F, Schneider M (2009) Nitrogen and carbon isotope ratios in suspended matter and dissolved inorganic carbon in a meromictic lake of the northern Alps (Bavaria, Germany). In: ASLO aquatic sciences meeting 2009, Nice, 25–30 Jan 2009

    Google Scholar 

  • Thuro K, Baumgärtner W, Esslinger C (2000) Gypsum karst problems along an alpine motorway tunnel. In: International conference on geotechnical and geological engineering, Melbourne, 19–24 Nov 2000

    Google Scholar 

  • Tonolla M, Demarta A, Peduzzi R, Hahn D (1999) In situ analysis of phototrophic sulfur bacteria in the chemocline of meromictic Lake Cadagno (Switzerland). Appl Environ Microbiol 65:325–330

    Google Scholar 

  • Tonolla M, Demarta A, Peduzzi S, Hahn D, Peduzzi R (2000) In situ analysis of sulfate-reducing bacteria related to Desulfocapsa thiozymogenes in the chemocline of meromictic Lake Cadagno (Switzerland). Appl Environ Microbiol 66:820–824

    Article  PubMed  CAS  Google Scholar 

  • Tonolla M, Peduzzi S, Hahn D, Peduzzi R (2003) Spatio-temporal distribution of phototrophic sulfur bacteria in the chemocline of meromictic Lake Cadagno (Switzerland). FEMS Microbiol Ecol 43:89–98

    Article  PubMed  CAS  Google Scholar 

  • Tonolla M, Peduzzi S, Demarta A, Peduzzi R, Hahn D (2004) Phototropic sulfur and sulfate-reducing bacteria in the chemocline of meromictic Lake Cadagno, Switzerland. J Limnol 63:161–170

    Google Scholar 

  • Tonolla M, Bottinelli M, Demarta A, Peduzzi R, Hahn D (2005a) Molecular identification of an uncultured bacterium (“morphotype R”) in meromictic Lake Cadagno, Switzerland. FEMS Microbiol Ecol 53:235–244

    Article  PubMed  CAS  Google Scholar 

  • Tonolla M, Peduzzi R, Hahn D (2005b) Long-term population dynamics of phototrophic sulfur bacteria in the chemocline of Lake Cadagno, Switzerland. Appl Environ Microbiol 71:3544–3550

    Article  PubMed  CAS  Google Scholar 

  • Van Gemerden H, Montesinos E, Mas J, Guerrero R (1985) Diel cycle of metabolism of phototrophic purple sulfur bacteria in Lake Ciso, Spain. Limnol Oceanogr 30:932–943

    Article  Google Scholar 

  • Vila X, Dokulil M, Garcia-Gil LJ, Abella CA, Borrego CM, Baneras L (1996) Composition and distribution of phototrophic bacterioplankton in the deep communities of several central European lakes: the role of light quality. Arch Hydrobiol Spec Issue Advanc Limnol 48:183–196

    Google Scholar 

  • Vila X, Abella CA, Figueras JB, Hurley JP (1998) Vertical models of phototrophic bacterial distribution in the metalimnetic microbial communities of several freshwater North-American kettle lakes. FEMS Microbiol Ecol 25:287–299

    Article  CAS  Google Scholar 

Download references

 Acknowledgments

We thank the city of Füssen and the Hotel Alatsee for their great support of our research. We also thank Andy Reuner and Inge Polle of the Department of Zoology, Universität Stuttgart for their support in the laboratory.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Gisela B. Fritz .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2012 Springer Science+Business Media B.V.

About this chapter

Cite this chapter

Fritz, G.B., Pfannkuchen, M., Struck, U., Hengherr, S., Strohmeier, S., Brümmer, F. (2012). Characterizing an Anoxic Habitat: Sulfur Bacteria in a Meromictic Alpine Lake. In: Altenbach, A., Bernhard, J., Seckbach, J. (eds) Anoxia. Cellular Origin, Life in Extreme Habitats and Astrobiology, vol 21. Springer, Dordrecht. https://doi.org/10.1007/978-94-007-1896-8_23

Download citation

Publish with us

Policies and ethics