Skip to main content

Robust Brain Age Estimation via Regression Models and MRI-Derived Features

  • Conference paper
  • First Online:
Advances in Computational Collective Intelligence (ICCCI 2023)

Abstract

The determination of biological brain age is a crucial biomarker in the assessment of neurological disorders and understanding of the morphological changes that occur during aging. Various machine learning models have been proposed for estimating brain age through Magnetic Resonance Imaging (MRI) of healthy controls. However, developing a robust brain age estimation (BAE) framework has been challenging due to the selection of appropriate MRI-derived features and the high cost of MRI acquisition. In this study, we present a novel BAE framework using the Open Big Healthy Brain (OpenBHB) dataset, which is a new multi-site and publicly available benchmark dataset that includes region-wise feature metrics derived from T1-weighted (T1-w) brain MRI scans of 3965 healthy controls aged between 6 to 86 years. Our approach integrates three different MRI-derived region-wise features and different regression models, resulting in a highly accurate brain age estimation with a Mean Absolute Error (MAE) of 3.25 years, demonstrating the framework’s robustness. We also analyze our model’s regression-based performance on gender-wise (male and female) healthy test groups. The proposed BAE framework provides a new approach for estimating brain age, which has important implications for the understanding of neurological disorders and age-related brain changes.

M. Patterson and I. U. Khan—Equal contribution.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Notes

  1. 1.

    The dataset was provided (in part) by Neurospin, CEA, France.

  2. 2.

    http://fcon_1000.projects.nitrc.org/indi/abide/.

  3. 3.

    https://www.nitrc.org/projects/gspdata.

  4. 4.

    http://fcon_1000.projects.nitrc.org/indi/CoRR/html/.

  5. 5.

    http://brain-development.org/ixi-dataset/.

  6. 6.

    https://osf.io/vhtf6/wiki/Localizer/.

  7. 7.

    https://openneuro.org/datasets/ds000221/.

  8. 8.

    https://openneuro.org/datasets/ds002345/.

  9. 9.

    https://openneuro.org/datasets/ds002330/.

  10. 10.

    https://openneuro.org/datasets/ds003974/.

References

  1. Aycheh, H.M., Seong, J.K., Shin, J.H., et al.: Biological brain age prediction using cortical thickness data: a large scale cohort study. Front. Aging Neurosci. 10, 252 (2018)

    Article  Google Scholar 

  2. Baecker, L., Dafflon, J., Da Costa, P.F., et al.: Brain age prediction: a comparison between machine learning models using region and voxel based morphometric data. Hum. Brain Mapp. 42(8), 2332–2346 (2021)

    Article  Google Scholar 

  3. Basodi, S., Raja, R., Ray, B., et al.: Decentralized brain age estimation using MRI data. Neuroinformatics 20, 981–990 (2022)

    Article  Google Scholar 

  4. Beheshti, I., Maikusa, N., Matsuda, H.: The accuracy of T1-weighted voxel-wise and region-wise metrics for brain age estimation. Comput. Meth. Program. Biomed. 214, 106585 (2022)

    Article  Google Scholar 

  5. Beheshti, I., Mishra, S., Sone, D., et al.: T1-weighted MRI-driven brain age estimation in Alzheimer’s disease and Parkinson’s disease. Aging Dis. 11(3), 618 (2020)

    Article  Google Scholar 

  6. Cole, J.H., Poudel, R.P., Tsagkrasoulis, D., et al.: Predicting brain age with deep learning from raw imaging data results in a reliable and heritable biomarker. Neuroimage 163, 115–124 (2017)

    Article  Google Scholar 

  7. Cole, J.H., Ritchie, S.J., Bastin, M.E., et al.: Brain age predicts mortality. Mol. Psychiatry 23(5), 1385–1392 (2017)

    Article  Google Scholar 

  8. Desikan, R.S., Ségonne, F., Fischl, B., et al.: An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral-based regions of interest. Neuroimage 31(3), 968–980 (2006)

    Article  Google Scholar 

  9. Dufumier, B., Grigis, A., Victor, J., et al.: OpenBHB: a large-scale multi-site brain MRI data-set for age prediction and debiasing. Neuroimage 263, 119637 (2022)

    Article  Google Scholar 

  10. Ediri Arachchi, W., Peng, Y., Zhang, X., et al.: A systematic characterization of structural brain changes in schizophrenia. Neurosci. Bull. 36(10), 1107–1122 (2020)

    Article  Google Scholar 

  11. Farokhian, F., Yang, C., Beheshti, I., et al.: Age-related gray and white matter changes in normal adult brains. Aging Dis. 8(6), 899–909 (2017)

    Article  Google Scholar 

  12. Fischl, B., Van Der Kouwe, A., Destrieux, C., et al.: Automatically parcellating the human cerebral cortex. Cereb. Cortex 14(1), 11–22 (2004)

    Article  Google Scholar 

  13. Franke, K., Gaser, C.: Ten years of BrainAGE as a neuroimaging biomarker of brain aging: what insights have we gained? Front. Neurol. 10, 789 (2019)

    Article  Google Scholar 

  14. Franke, K., Ziegler, G., Klöppel, S., et al.: Estimating the age of healthy subjects from T1-weighted MRI scans using kernel methods: exploring the influence of various parameters. Neuroimage 50(3), 883–892 (2010)

    Article  Google Scholar 

  15. Fujimoto, R., Ito, K., Wu, K., et al.: Brain age estimation from T1-weighted images using effective local features. In: Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS, pp. 3028–3031 (2017)

    Google Scholar 

  16. Gaser, C., Dahnke, R.: CAT - A Computational Anatomy Toolbox for the Analysis of Structural MRI Data. bioRxiv (2022)

    Google Scholar 

  17. Gaser, C., Franke, K., Klöppel, S., et al.: BrainAGE in mild cognitive impaired patients: predicting the conversion to Alzheimer’s Disease. PLoS ONE 8(6), e67346 (2013)

    Article  Google Scholar 

  18. Hafkemeijer, A., Altmann-Schneider, I., de Craen, A.J., et al.: Associations between age and gray matter volume in anatomical brain networks in middle-aged to older adults. Aging Cell 13(6), 1068–1074 (2014)

    Article  Google Scholar 

  19. Jiang, H., Lu, N., Chen, K., et al.: Predicting brain age of healthy adults based on structural MRI parcellation using convolutional neural networks. Front. Neurol. 10, 1346 (2020)

    Article  Google Scholar 

  20. Jónsson, B.A., Bjornsdottir, G., Thorgeirsson, T., et al.: Brain age prediction using deep learning uncovers associated sequence variants. Nat. Commun. 10(1), 5409 (2019)

    Article  Google Scholar 

  21. Lee, P.L., Kuo, C.Y., Wang, P.N., et al.: Regional rather than global brain age mediates cognitive function in cerebral small vessel disease. Brain Commun. 4(5) (2022)

    Google Scholar 

  22. Lee, W.H., Antoniades, M., Schnack, H.G., et al.: Brain age prediction in schizophrenia: does the choice of machine learning algorithm matter? Psychiatry Res. Neuroimaging 310, 111270 (2021)

    Article  Google Scholar 

  23. Liu, X., Beheshti, I., Zheng, W., et al.: Brain age estimation using multi-feature-based networks. Comput. Biol. Med. 143, 105285 (2022)

    Article  Google Scholar 

  24. Luders, E., Cherbuin, N., Gaser, C.: Estimating brain age using high-resolution pattern recognition: younger brains in long term meditation practitioners. Neuroimage 134, 508–513 (2016)

    Article  Google Scholar 

  25. Van der Maaten, L., Hinton, G.: Visualizing data using t-SNE. J. Mach. Learn. Res. 9(11), 2579–2604 (2008)

    MATH  Google Scholar 

  26. Mikheev, A., Nevsky, G., Govindan, S., et al.: Fully automatic segmentation of the brain from T1-weighted MRI using bridge burner algorithm. J. Magn. Reson. Imaging : JMRI 27(6), 1235–1241 (2008)

    Article  Google Scholar 

  27. Mishra, S., Beheshti, I., Khanna, P.: A review of neuroimaging-driven brain age estimation for identification of brain disorders and health conditions. IEEE Rev. Biomed. Eng. 16, 371–385 (2021)

    Article  Google Scholar 

  28. Modabbernia, A., Whalley, H.C., Glahn, D.C., et al.: Systematic evaluation of ML algorithms for neuroanatomically-based age prediction in youth. Hum. Brain Mapp. 43(17), 5126–5140 (2022)

    Article  Google Scholar 

  29. Nenadić, I., Dietzek, M., Langbein, K., et al.: BrainAGE Score Indicates Accelerated Brain Aging in Schizophrenia, but Not Bipolar Disorder. Psychiatry Research: Neuroimaging 266, 86–89 (2017)

    Article  Google Scholar 

  30. Sajedi, H., Pardakhti, N.: Age Prediction Based on Brain MRI Image: A Survey. J. Med. Syst. 43(8), 279 (2019)

    Article  Google Scholar 

  31. Sanford, N., Ge, R., Antoniades, M., et al.: Sex differences in predictors and regional patterns of brain age gap estimates. Hum. Brain Mapp. 43(15), 4689–4698 (2022)

    Article  Google Scholar 

  32. Taki, Y., Thyreau, B., Kinomura, S., et al.: Correlations among brain gray matter volumes, age, gender, and hemisphere in healthy individuals. PLoS ONE 6(7), e22734 (2011)

    Article  Google Scholar 

  33. Taylor, A., Zhang, F., Niu, X., et al.: Investigating the temporal pattern of neuroimaging-based brain age estimation as a biomarker for Alzheimer’s disease related neurodegeneration. Neuroimage 263, 119621 (2022)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Murray Patterson or Imdad Ullah Khan .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2023 The Author(s), under exclusive license to Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Ahmed, M., Sardar, U., Ali, S., Alam, S., Patterson, M., Khan, I.U. (2023). Robust Brain Age Estimation via Regression Models and MRI-Derived Features. In: Nguyen, N.T., et al. Advances in Computational Collective Intelligence. ICCCI 2023. Communications in Computer and Information Science, vol 1864. Springer, Cham. https://doi.org/10.1007/978-3-031-41774-0_52

Download citation

  • DOI: https://doi.org/10.1007/978-3-031-41774-0_52

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-031-41773-3

  • Online ISBN: 978-3-031-41774-0

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics