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The World of Microorganisms

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Brief Lessons in Microbiology
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Abstract

We live in the world, which is teeming with microorganisms. Our bodies are full of microbes and they are crucial for our survival. Origin of life as we know it is tightly connected with microorganisms. First life on Earth was microbial. Without them, there wouldn’t be us. Remnants of bacteria reside in our cells and generate energy for important biological processes. Although microbes are small and relatively simple, they are a very diverse group of organisms. Microorganisms can be found in all three domains of life: Bacteria, Archaea, and Eukarya. Other microscopic entities, which do not belong to any of the three domains of life, but are nevertheless fascinating are viruses, viroids, and prions.

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References

  • Albers SV, Meyer BH (2011) The archaeal cell envelope. Nat Rev Microbiol 9(6):414–426

    Article  CAS  PubMed  Google Scholar 

  • Alexander CMO, Cody GD, De Gregorio BT, Nittler LR, Stroud RM (2017) The nature, origin and modification of insoluble organic matter in chondrites, the possibly interstellar source of Earth's C and N. Chem Erde 77(2):227–256

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Annesley SJ, Fisher PR (2019) Mitochondria in health and disease. Cell 8(7)

    Google Scholar 

  • Bains W (2004) Many chemistries could be used to build living systems. Astrobiology 4(2):137–167

    Article  CAS  PubMed  Google Scholar 

  • Bar-On YM, Milo R (2019) The biomass composition of the oceans: a blueprint of our blue planet. Cell 179(7):1451–1454

    Article  CAS  PubMed  Google Scholar 

  • Barry ER, Bell SD (2006) DNA replication in the archaea. Microbiol Mol Biol Rev 70(4):876–887

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Benner SA, Ricardo A, Carrigan MA (2004) Is there a common chemical model for life in the universe? Curr Opin Chem Biol 8(6):672–689

    Article  CAS  PubMed  Google Scholar 

  • Billane K, Harrison E, Cameron D, Brockhurst MA (2022) Why do plasmids manipulate the expression of bacterial phenotypes? Philos Trans R Soc Lond Ser B Biol Sci 377(1842):20200461

    Article  Google Scholar 

  • Casiraghi A, Suigo L, Valoti E, Straniero V (2020) Targeting bacterial cell division: a binding site-centered approach to the Most promising inhibitors of the essential protein FtsZ. Antibiotics (Basel) 9(2)

    Google Scholar 

  • Chen L, Qin H, Zhao R, Zhao X, Lin L, Chen Y, Lin Y, Li Y, Qin Y, Liu S, Cheng K, Chen H, Shi J, Anderson GJ, Wu Y, Zhao Y, Nie G (2021) Bacterial cytoplasmic membranes synergistically enhance the antitumor activity of autologous cancer vaccines. Sci Transl Med 13(601)

    Google Scholar 

  • Dame RT, Rashid FM, Grainger DC (2020) Chromosome organization in bacteria: mechanistic insights into genome structure and function. Nat Rev Genet 21(4):227–242

    Article  CAS  PubMed  Google Scholar 

  • Damer B, Deamer D (2015) Coupled phases and combinatorial selection in fluctuating hydrothermal pools: a scenario to guide experimental approaches to the origin of cellular life. Life (Basel) 5(1):872–887

    CAS  PubMed  Google Scholar 

  • De Sanctis MC, Capaccioni F, Ciarniello M, Filacchione G, Formisano M, Mottola S, Raponi A, Tosi F, Bockelée-Morvan D, Erard S, Leyrat C, Schmitt B, Ammannito E, Arnold G, Barucci MA, Combi M, Capria MT, Cerroni P, Ip WH, Kuehrt E, McCord TB, Palomba E, Beck P, Quirico E, Team V (2015) The diurnal cycle of water ice on comet 67P/Churyumov-Gerasimenko. Nature 525(7570):500–503

    Article  PubMed  Google Scholar 

  • del Solar G, Giraldo R, Ruiz-Echevarría MJ, Espinosa M, Díaz-Orejas R (1998) Replication and control of circular bacterial plasmids. Microbiol Mol Biol Rev 62(2):434–464

    Article  PubMed  PubMed Central  Google Scholar 

  • Djokic T, Van Kranendonk MJ, Campbell KA, Walter MR, Ward CR (2017) Earliest signs of life on land preserved in ca. 3.5 Ga hot spring deposits. Nat Commun 8:15263

    Article  PubMed  PubMed Central  Google Scholar 

  • Dodd MS, Papineau D, Grenne T, Slack JF, Rittner M, Pirajno F, O'Neil J, Little CT (2017) Evidence for early life in Earth’s oldest hydrothermal vent precipitates. Nature 543(7643):60–64

    Article  CAS  PubMed  Google Scholar 

  • Dos Santos Oliveira J, Lavell AA, Essus VA, Souza G, Nunes GHP, Benício E, Guimarães AJ, Parent KN, Cortines JR (2021) Structure and physiology of giant DNA viruses. Curr Opin Virol 49:58–67

    Article  CAS  PubMed  Google Scholar 

  • Dou D, Revol R, Östbye H, Wang H, Daniels R (2018) Influenza a virus cell entry, replication, Virion assembly and movement. Front Immunol 9:1581

    Article  PubMed  PubMed Central  Google Scholar 

  • Durham BP (2021) Deciphering metabolic currencies that support marine microbial networks. mSystems 6(4):e0076321

    Article  PubMed  Google Scholar 

  • Edalati K, Taniguchi I, Floriano R, Luchessi AD (2022) Glycine amino acid transformation under impacts by small solar system bodies, simulated via high-pressure torsion method. Sci Rep 12(1):5677

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Fang Q, Zhu D, Agarkova I, Adhikari J, Klose T, Liu Y, Chen Z, Sun Y, Gross ML, Van Etten JL, Zhang X, Rossmann MG (2019) Near-atomic structure of a giant virus. Nat Commun 10(1):388

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Filacchione G, De Sanctis MC, Capaccioni F, Raponi A, Tosi F, Ciarniello M, Cerroni P, Piccioni G, Capria MT, Palomba E, Bellucci G, Erard S, Bockelee-Morvan D, Leyrat C, Arnold G, Barucci MA, Fulchignoni M, Schmitt B, Quirico E, Jaumann R, Stephan K, Longobardo A, Mennella V, Migliorini A, Ammannito E, Benkhoff J, Bibring JP, Blanco A, Blecka MI, Carlson R, Carsenty U, Colangeli L, Combes M, Combi M, Crovisier J, Drossart P, Encrenaz T, Federico C, Fink U, Fonti S, Ip WH, Irwin P, Kuehrt E, Langevin Y, Magni G, McCord T, Moroz L, Mottola S, Orofino V, Schade U, Taylor F, Tiphene D, Tozzi GP, Beck P, Biver N, Bonal L, Combe JP, Despan D, Flamini E, Formisano M, Fornasier S, Frigeri A, Grassi D, Gudipati MS, Kappel D, Mancarella F, Markus K, Merlin F, Orosei R, Rinaldi G, Cartacci M, Cicchetti A, Giuppi S, Hello Y, Henry F, Jacquinod S, Reess JM, Noschese R, Politi R, Peter G (2016) Exposed water ice on the nucleus of comet 67P/Churyumov-Gerasimenko. Nature 529(7586):368–372

    Article  CAS  PubMed  Google Scholar 

  • Fish M, Nash D, German A, Overton A, Jelokhani-Niaraki M, Chuong SDX, Smith MD (2022) New insights into the chloroplast outer membrane proteome and associated targeting pathways. Int J Mol Sci 23(3)

    Google Scholar 

  • Flores R, Gago-Zachert S, Serra P, Sanjuán R, Elena SF (2014) Viroids: survivors from the RNA world? Annu Rev Microbiol 68:395–414

    Article  CAS  PubMed  Google Scholar 

  • Flores R, Navarro B, Delgado S, Serra P, Di Serio F (2020) Viroid pathogenesis: a critical appraisal of the role of RNA silencing in triggering the initial molecular lesion. FEMS Microbiol Rev 44(3):386–398

    Article  CAS  PubMed  Google Scholar 

  • Flores R, Navarro B, Serra P, Di Serio F (2022) A scenario for the emergence of protoviroids in the RNA world and for their further evolution into viroids and viroid-like RNAs by modular recombinations and mutations. Virus Evol 8(1):veab107

    Article  PubMed  PubMed Central  Google Scholar 

  • Fornasier S, Mottola S, Keller HU, Barucci MA, Davidsson B, Feller C, Deshapriya JD, Sierks H, Barbieri C, Lamy PL, Rodrigo R, Koschny D, Rickman H, A'Hearn M, Agarwal J, Bertaux JL, Bertini I, Besse S, Cremonese G, Da Deppo V, Debei S, De Cecco M, Deller J, El-Maarry MR, Fulle M, Groussin O, Gutierrez PJ, Güttler C, Hofmann M, Hviid SF, Ip WH, Jorda L, Knollenberg J, Kovacs G, Kramm R, Kührt E, Küppers M, Lara ML, Lazzarin M, Moreno JJ, Marzari F, Massironi M, Naletto G, Oklay N, Pajola M, Pommerol A, Preusker F, Scholten F, Shi X, Thomas N, Toth I, Tubiana C, Vincent JB (2016) Rosetta's comet 67P/Churyumov-Gerasimenko sheds its dusty mantle to reveal its icy nature. Science 354(6319):1566–1570

    Article  CAS  PubMed  Google Scholar 

  • Forster SC, Kumar N, Anonye BO, Almeida A, Viciani E, Stares MD, Dunn M, Mkandawire TT, Zhu A, Shao Y, Pike LJ, Louie T, Browne HP, Mitchell AL, Neville BA, Finn RD, Lawley TD (2019) A human gut bacterial genome and culture collection for improved metagenomic analyses. Nat Biotechnol 37(2):186–192

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Frontzek K, Bardelli M, Senatore A, Henzi A, Reimann RR, Bedir S, Marino M, Hussain R, Jurt S, Meisl G, Pedotti M, Mazzola F, Siligardi G, Zerbe O, Losa M, Knowles T, Lakkaraju A, Zhu C, Schwarz P, Hornemann S, Holt MG, Simonelli L, Varani L, Aguzzi A (2022) A conformational switch controlling the toxicity of the prion protein. Nat Struct Mol Biol 29(8):831–840

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Fütterer O, Angelov A, Liesegang H, Gottschalk G, Schleper C, Schepers B, Dock C, Antranikian G, Liebl W (2004) Genome sequence of Picrophilus torridus and its implications for life around pH 0. Proc Natl Acad Sci U S A 101(24):9091–9096

    Article  PubMed  PubMed Central  Google Scholar 

  • Hasan NA, Grim CJ, Lipp EK, Rivera IN, Chun J, Haley BJ, Taviani E, Choi SY, Hoq M, Munk AC, Brettin TS, Bruce D, Challacombe JF, Detter JC, Han CS, Eisen JA, Huq A, Colwell RR (2015) Deep-sea hydrothermal vent bacteria related to human pathogenic vibrio species. Proc Natl Acad Sci U S A 112(21):E2813–E2819

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Henning T, Salama F (1998) Carbon in the universe. Science 282(5397):2204–2210

    Article  CAS  PubMed  Google Scholar 

  • Hinnebusch J, Tilly K (1993) Linear plasmids and chromosomes in bacteria. Mol Microbiol 10(5):917–922

    Article  CAS  PubMed  Google Scholar 

  • Jensen PE, Leister D (2014) Chloroplast evolution, structure and functions. F1000Prime Rep 6:40

    Article  PubMed  PubMed Central  Google Scholar 

  • Jones JE, Le Sage V, Lakdawala SS (2021a) Viral and host heterogeneity and their effects on the viral life cycle. Nat Rev Microbiol 19(4):272–282

    Article  CAS  PubMed  Google Scholar 

  • Jones PE, Pérez-Segura C, Bryer AJ, Perilla JR, Hadden-Perilla JA (2021b) Molecular dynamics of the viral life cycle: progress and prospects. Curr Opin Virol 50:128–138

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Katinka MD, Duprat S, Cornillot E, Méténier G, Thomarat F, Prensier G, Barbe V, Peyretaillade E, Brottier P, Wincker P, Delbac F, El Alaoui H, Peyret P, Saurin W, Gouy M, Weissenbach J, Vivarès CP (2001) Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Nature 414(6862):450–453

    Article  CAS  PubMed  Google Scholar 

  • Kelman LM, Kelman Z (2014) Archaeal DNA replication. Annu Rev Genet 48:71–97

    Article  CAS  PubMed  Google Scholar 

  • Kim Y, Terng EL, Riekhof WR, Cahoon EB, Cerutti H (2018) Endoplasmic reticulum acyltransferase with prokaryotic substrate preference contributes to triacylglycerol assembly in. Proc Natl Acad Sci U S A 115(7):1652–1657

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Koonin EV, Dolja VV (2014) Virus world as an evolutionary network of viruses and capsidless selfish elements. Microbiol Mol Biol Rev 78(2):278–303

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Koonin EV, Mushegian AR, Galperin MY, Walker DR (1997) Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea. Mol Microbiol 25(4):619–637

    Article  CAS  PubMed  Google Scholar 

  • Kraus A, Hoyt F, Schwartz CL, Hansen B, Artikis E, Hughson AG, Raymond GJ, Race B, Baron GS, Caughey B (2021) High-resolution structure and strain comparison of infectious mammalian prions. Mol Cell 81(21):4540–4551.e4546

    Article  CAS  PubMed  Google Scholar 

  • Krupovic M, Dolja VV, Koonin EV (2020) The LUCA and its complex virome. Nat Rev Microbiol 18(11):661–670

    Article  CAS  PubMed  Google Scholar 

  • Kummer E, Ban N (2021) Mechanisms and regulation of protein synthesis in mitochondria. Nat Rev Mol Cell Biol 22(5):307–325

    Article  CAS  PubMed  Google Scholar 

  • Kvenvolden K, Lawless J, Pering K, Peterson E, Flores J, Ponnamperuma C, Kaplan IR, Moore C (1970) Evidence for extraterrestrial amino-acids and hydrocarbons in the Murchison meteorite. Nature 228(5275):923–926

    Article  CAS  PubMed  Google Scholar 

  • Kvenvolden KA, Lawless JG, Ponnamperuma C (1971) Nonprotein amino acids in the Murchison meteorite. Proc Natl Acad Sci U S A 68(2):486–490

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Laidlaw KME, Calder G, MacDonald C (2022) Recycling of cell surface membrane proteins from yeast endosomes is regulated by ubiquitinated Ist1. J Cell Biol 221(11)

    Google Scholar 

  • Lee BD, Neri U, Oh CJ, Simmonds P, Koonin EV (2022) ViroidDB: a database of viroids and viroid-like circular RNAs. Nucleic Acids Res 50(D1):D432–D438

    Article  CAS  PubMed  Google Scholar 

  • Lee HH, Hsu CC, Lin YL, Chen CW (2011) Linear plasmids mobilize linear but not circular chromosomes in Streptomyces: support for the 'end first' model of conjugal transfer. Microbiology (Reading) 157(Pt 9):2556–2568

    Article  CAS  PubMed  Google Scholar 

  • Lennon JT, Locey KJ (2020) More support for Earth's massive microbiome. Biol Direct 15(1):5

    Article  PubMed  PubMed Central  Google Scholar 

  • Locey KJ, Lennon JT (2016) Scaling laws predict global microbial diversity. Proc Natl Acad Sci U S A 113(21):5970–5975

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ludewig-Klingner AK, Michael V, Jarek M, Brinkmann H, Petersen J (2018) Distribution and evolution of peroxisomes in Alveolates (Apicomplexa, dinoflagellates, ciliates). Genome Biol Evol 10(1):1–13

    Article  CAS  PubMed  Google Scholar 

  • Makarova KS, Aravind L, Galperin MY, Grishin NV, Tatusov RL, Wolf YI, Koonin EV (1999) Comparative genomics of the archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. Genome Res 9(7):608–628

    Article  CAS  PubMed  Google Scholar 

  • Marshall CJ, Santangelo TJ (2020) Archaeal DNA repair mechanisms. Biomol Ther 10(11)

    Google Scholar 

  • Martinez-Gutierrez CA, Aylward FO (2022) Genome size distributions in bacteria and archaea are strongly linked to evolutionary history at broad phylogenetic scales. PLoS Genet 18(5):e1010220

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • McBride HM, Neuspiel M, Wasiak S (2006) Mitochondria: more than just a powerhouse. Curr Biol 16(14):R551–R560

    Article  CAS  PubMed  Google Scholar 

  • McKenney PT, Driks A, Eichenberger P (2013) The Bacillus subtilis endospore: assembly and functions of the multilayered coat. Nat Rev Microbiol 11(1):33–44

    Article  CAS  PubMed  Google Scholar 

  • Meroueh SO, Bencze KZ, Hesek D, Lee M, Fisher JF, Stemmler TL, Mobashery S (2006) Three-dimensional structure of the bacterial cell wall peptidoglycan. Proc Natl Acad Sci U S A 103(12):4404–4409

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Moelling K, Broecker F (2021) Viroids and the origin of life. Int J Mol Sci 22(7)

    Google Scholar 

  • Mulkidjanian AY, Bychkov AY, Dibrova DV, Galperin MY, Koonin EV (2012) Origin of first cells at terrestrial, anoxic geothermal fields. Proc Natl Acad Sci U S A 109(14):E821–E830

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Müller F, Escobar L, Xu F, Węgrzyn E, Nainytė M, Amatov T, Chan CY, Pichler A, Carell T (2022) A prebiotically plausible scenario of an RNA-peptide world. Nature 605(7909):279–284

    Article  PubMed  PubMed Central  Google Scholar 

  • Naslavsky N, Caplan S (2018) The enigmatic endosome–sorting the ins and outs of endocytic trafficking. J Cell Sci 131(13)

    Google Scholar 

  • Navarro B, Flores R, Di Serio F (2021) Advances in viroid-host interactions. Annu Rev Virol 8(1):305–325

    Article  PubMed  Google Scholar 

  • Nicholson WL, Munakata N, Horneck G, Melosh HJ, Setlow P (2000) Resistance of bacillus endospores to extreme terrestrial and extraterrestrial environments. Microbiol Mol Biol Rev 64(3):548–572

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Noda Y, Yoda K (2013) Molecular mechanisms of the localization of membrane proteins in the yeast Golgi compartments. Biosci Biotechnol Biochem 77(3):435–445

    Article  CAS  PubMed  Google Scholar 

  • Omran A, Pasek M (2020) A constructive way to think about different hydrothermal environments for the origins of life. Life (Basel) 10(4)

    Google Scholar 

  • Orlek A, Stoesser N, Anjum MF, Doumith M, Ellington MJ, Peto T, Crook D, Woodford N, Walker AS, Phan H, Sheppard AE (2017) Plasmid classification in an era of whole-genome sequencing: application in studies of antibiotic resistance epidemiology. Front Microbiol 8:182

    Article  PubMed  PubMed Central  Google Scholar 

  • Pace NR (2001) The universal nature of biochemistry. Proc Natl Acad Sci U S A 98(3):805–808

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Petkowski JJ, Bains W, Seager S (2020) On the potential of silicon as a building block for life. Life (Basel) 10(6)

    Google Scholar 

  • Pohlschroder M, Pfeiffer F, Schulze S, Abdul Halim MF (2018) Archaeal cell surface biogenesis. FEMS Microbiol Rev 42(5):694–717

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Poltronieri P, Sun B, Mallardo M (2015) RNA viruses: RNA roles in pathogenesis, Coreplication and viral load. Curr Genomics 16(5):327–335

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Preuss D, Mulholland J, Kaiser CA, Orlean P, Albright C, Rose MD, Robbins PW, Botstein D (1991) Structure of the yeast endoplasmic reticulum: localization of ER proteins using immunofluorescence and immunoelectron microscopy. Yeast 7(9):891–911

    Article  CAS  PubMed  Google Scholar 

  • Raynaud X, Nunan N (2014) Spatial ecology of bacteria at the microscale in soil. PLoS One 9(1):e87217

    Article  PubMed  PubMed Central  Google Scholar 

  • Rivkin AS, Emery JP (2010) Detection of ice and organics on an asteroidal surface. Nature 464(7293):1322–1323

    Article  CAS  PubMed  Google Scholar 

  • Rodríguez-Beltrán J, DelaFuente J, León-Sampedro R, MacLean RC, San Millán Á (2021) Beyond horizontal gene transfer: the role of plasmids in bacterial evolution. Nat Rev Microbiol 19(6):347–359

    Article  PubMed  Google Scholar 

  • Sanz-Hernández M, Barritt JD, Sobek J, Hornemann S, Aguzzi A, De Simone A (2021) Mechanism of misfolding of the human prion protein revealed by a pathological mutation. Proc Natl Acad Sci U S A 118(12)

    Google Scholar 

  • Scheckel C, Aguzzi A (2018) Prions, prionoids and protein misfolding disorders. Nat Rev Genet 19(7):405–418

    Article  CAS  PubMed  Google Scholar 

  • Schulze-Makuch D, Irwin LN (2006) The prospect of alien life in exotic forms on other worlds. Naturwissenschaften 93(4):155–172

    Article  CAS  PubMed  Google Scholar 

  • Schwarz DS, Blower MD (2016) The endoplasmic reticulum: structure, function and response to cellular signaling. Cell Mol Life Sci 73(1):79–94

    Article  CAS  PubMed  Google Scholar 

  • Sharma V, Colson P, Pontarotti P, Raoult D (2016) Mimivirus inaugurated in the 21st century the beginning of a reclassification of viruses. Curr Opin Microbiol 31:16–24

    Article  PubMed  Google Scholar 

  • Sibirny AA (2016) Yeast peroxisomes: structure, functions and biotechnological opportunities. FEMS Yeast Res 16(4):fow038

    Article  PubMed  Google Scholar 

  • Slesarev AI, Mezhevaya KV, Makarova KS, Polushin NN, Shcherbinina OV, Shakhova VV, Belova GI, Aravind L, Natale DA, Rogozin IB, Tatusov RL, Wolf YI, Stetter KO, Malykh AG, Koonin EV, Kozyavkin SA (2002) The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens. Proc Natl Acad Sci U S A 99(7):4644–4649

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, Neal PR, Arrieta JM, Herndl GJ (2006) Microbial diversity in the deep sea and the underexplored “rare biosphere”. Proc Natl Acad Sci U S A 103(32):12115–12120

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Spinelli JB, Haigis MC (2018) The multifaceted contributions of mitochondria to cellular metabolism. Nat Cell Biol 20(7):745–754

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Stan-Lotter H, Fendrihan S (2015) Halophilic archaea: life with desiccation, radiation and oligotrophy over geological times. Life (Basel) 5(3):1487–1496

    CAS  PubMed  Google Scholar 

  • Strahl H, Errington J (2017) Bacterial membranes: structure, domains, and function. Annu Rev Microbiol 71:519–538

    Article  CAS  PubMed  Google Scholar 

  • Tao Y, Yang Y, Zhou R, Gong T (2020) Golgi apparatus: an emerging platform for innate immunity. Trends Cell Biol 30(6):467–477

    Article  CAS  PubMed  Google Scholar 

  • Torsvik V, Goksøyr J, Daae FL (1990) High diversity in DNA of soil bacteria. Appl Environ Microbiol 56(3):782–787

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Trivedi PC, Bartlett JJ, Pulinilkunnil T (2020) Lysosomal biology and function: modern view of cellular debris bin. Cell 9(5)

    Google Scholar 

  • Vollmer W, Blanot D, de Pedro MA (2008) Peptidoglycan structure and architecture. FEMS Microbiol Rev 32(2):149–167

    Article  CAS  PubMed  Google Scholar 

  • Wang L, Wang M, Shi X, Yang J, Qian C, Liu Q, Zong L, Liu X, Zhu Z, Tang D, Zhang X (2021) Investigation into archaeal extremophilic lifestyles through comparative proteogenomic analysis. J Biomol Struct Dyn 39(18):7080–7092

    Article  CAS  PubMed  Google Scholar 

  • White MF, Allers T (2018) DNA repair in the archaea-an emerging picture. FEMS Microbiol Rev 42(4):514–526

    CAS  PubMed  Google Scholar 

  • Woese CR, Fox GE (1977) Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc Natl Acad Sci U S A 74(11):5088–5090

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wong CO, Gregory S, Hu H, Chao Y, Sepúlveda VE, He Y, Li-Kroeger D, Goldman WE, Bellen HJ, Venkatachalam K (2017) Lysosomal degradation is required for sustained phagocytosis of bacteria by macrophages. Cell Host Microbe 21(6):719–730.e716

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wu F, Japaridze A, Zheng X, Wiktor J, Kerssemakers JWJ, Dekker C (2019) Direct imaging of the circular chromosome in a live bacterium. Nat Commun 10(1):2194

    Article  PubMed  PubMed Central  Google Scholar 

  • Yang CC, Huang CH, Li CY, Tsay YG, Lee SC, Chen CW (2002) The terminal proteins of linear Streptomyces chromosomes and plasmids: a novel class of replication priming proteins. Mol Microbiol 43(2):297–305

    Article  PubMed  Google Scholar 

  • Zatopek KM, Gardner AF, Kelman Z (2018) Archaeal DNA replication and repair: new genetic, biophysical and molecular tools for discovering and characterizing enzymes, pathways and mechanisms. FEMS Microbiol Rev 42(4):477–488

    CAS  PubMed  Google Scholar 

  • Zykwinska A, Marchand L, Bonnetot S, Sinquin C, Colliec-Jouault S, Delbarre-Ladrat C (2019) Deep-sea hydrothermal vent bacteria as a source of glycosaminoglycan-mimetic exopolysaccharides. Molecules 24(9)

    Google Scholar 

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Juhas, M. (2023). The World of Microorganisms. In: Brief Lessons in Microbiology. Springer, Cham. https://doi.org/10.1007/978-3-031-29544-7_1

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