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The Role of Epigenetics in Brain and Spinal Cord Tumors

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Human Brain and Spinal Cord Tumors: From Bench to Bedside. Volume 1

Part of the book series: Advances in Experimental Medicine and Biology ((AEMB,volume 1394))

Abstract

Identification of distinct genetic and epigenetic profiles in various neuroepithelial tumors has improved the classification and uncovered novel diagnostic, prognostic, and predictive molecular biomarkers for improved prediction of treatment response and outcome. Especially, in pediatric high-grade brain tumors, such as diffuse midline glioma, H3K27M-altered and posterior fossa group A-ependymoma, epigenetic changes predominate, along with changes in expression of known oncogenes and tumor suppressor genes induced by histone modifications and DNA methylation. The precise role of epigenetic abnormalities is important for understanding tumorigenesis and the establishment of brain tumor treatment strategies. Using powerful epigenetic-based therapies for cancer cells, the aberrantly regulated epigenome can be restored to a more normal state through epigenetic reprogramming. Combinations of agents targeting DNA methylation and/or other epigenetic modifications may be a promising cancer treatment. Therefore, the integration of multi-omics data including epigenomics is now important for classifying primary brain tumors and predicting their biological behavior. Recent advances in molecular genetics and epigenetic integrated diagnostics of brain tumors influence new strategies for targeted therapy.

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References

  • Abbruzzese C, Matteoni S, Persico M, Villani V, Paggi MG (2020) Repurposing chlorpromazine in the treatment of glioblastoma multiforme: analysis of literature and forthcoming steps. J Exp Clin Cancer Res 39(1):26. https://doi.org/10.1186/s13046-020-1534-z

    Article  CAS  Google Scholar 

  • Aihara K, Mukasa A, Nagae G, Nomura M, Yamamoto S, Ueda H, Tatsuno K, Shibahara J, Takahashi M, Momose T, Tanaka S, Takayanagi S, Yanagisawa S, Nejo T, Takahashi S, Omata M, Otani R, Saito K, Narita Y, Nagane M, Nishikawa R, Ueki K, Aburatani H, Saito N (2017) Genetic and epigenetic stability of oligodendrogliomas at recurrence. Acta Neuropathol Commun 5(1):18. https://doi.org/10.1186/s40478-017-0422-z

    Article  CAS  Google Scholar 

  • Alharbi M, Mobark N, Bashawri Y, Abu Safieh L, Alowayn A, Aljelaify R, AlSaeed M, Almutairi A, Alqubaishi F, AlSolme E, Ahmad M, Al-Banyan A, Alotabi FE, Serrano J, Snuderl M, Al-Rashed M, Abedalthagafi M (2020) Methylation profiling of medulloblastoma in a clinical setting permits sub-classification and reveals new outcome predictions. Front Neurol 11:167. https://doi.org/10.3389/fneur.2020.00167

  • Amatori S, Tavolaro S, Gambardella S, Fanelli M (2021) The dark side of histones: genomic organization and role of oncohistones in cancer. Clin Epigenetics 13(1):71. https://doi.org/10.1186/s13148-021-01057-x

    Article  CAS  Google Scholar 

  • Aponte PM, Caicedo A (2017) Stemness in cancer: stem cells, cancer stem cells, and their microenvironment. Stem Cells Int 2017:5619472. https://doi.org/10.1155/2017/5619472

  • Appay R, Dehais C, Maurage CA, Alentorn A, Carpentier C, Colin C, Ducray F, Escande F, Idbaih A, Kamoun A, Marie Y, Mokhtari K, Tabouret E, Trabelsi N, Uro-Coste E, Delattre JY, Figarella-Branger D, Network P (2019) CDKN2A homozygous deletion is a strong adverse prognosis factor in diffuse malignant IDH-mutant gliomas. Neuro Oncol 21(12):1519–1528. https://doi.org/10.1093/neuonc/noz124

    Article  CAS  Google Scholar 

  • Aymard F, Bugler B, Schmidt CK, Guillou E, Caron P, Briois S, Iacovoni JS, Daburon V, Miller KM, Jackson SP, Legube G (2014) Transcriptionally active chromatin recruits homologous recombination at DNA double-strand breaks. Nat Struct Mol Biol 21(4):366–374. https://doi.org/10.1038/nsmb.2796

    Article  CAS  Google Scholar 

  • Bannister AJ, Kouzarides T (2011) Regulation of chromatin by histone modifications. Cell Res 21(3):381–395. https://doi.org/10.1038/cr.2011.22

    Article  CAS  Google Scholar 

  • Baylin SB, Jones PA (2016) Epigenetic determinants of cancer. Cold Spring Harb Perspect Biol 8(9). https://doi.org/10.1101/cshperspect.a019505

  • Berdasco M, Esteller M (2013) Genetic syndromes caused by mutations in epigenetic genes. Hum Genet 132(4):359–383. https://doi.org/10.1007/s00439-013-1271-x

    Article  CAS  Google Scholar 

  • Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J, Fry B, Meissner A, Wernig M, Plath K, Jaenisch R, Wagschal A, Feil R, Schreiber SL, Lander ES (2006) A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125(2):315–326. https://doi.org/10.1016/j.cell.2006.02.041

    Article  CAS  Google Scholar 

  • Biegel JA, Zhou JY, Rorke LB, Stenstrom C, Wainwright LM, Fogelgren B (1999) Germ-line and acquired mutations of INI1 in atypical teratoid and rhabdoid tumors. Cancer Res 59(1):74–79

    CAS  Google Scholar 

  • Brat DJ, Aldape K, Colman H, Figrarella-Branger D, Fuller GN, Giannini C, Holland EC, Jenkins RB, Kleinschmidt-DeMasters B, Komori T, Kros JM, Louis DN, McLean C, Perry A, Reifenberger G, Sarkar C, Stupp R, van den Bent MJ, von Deimling A, Weller M (2020) cIMPACT-NOW update 5: recommended grading criteria and terminologies for IDH-mutant astrocytomas. Acta Neuropathol 139(3):603–608. https://doi.org/10.1007/s00401-020-02127-9

    Article  Google Scholar 

  • Brat DJ, Aldape K, Colman H, Holland EC, Louis DN, Jenkins RB, Kleinschmidt-DeMasters BK, Perry A, Reifenberger G, Stupp R, von Deimling A, Weller M (2018) cIMPACT-NOW update 3: recommended diagnostic criteria for “Diffuse astrocytic glioma, IDH-wildtype, with molecular features of glioblastoma, WHO grade IV.” Acta Neuropathol 136(5):805–810. https://doi.org/10.1007/s00401-018-1913-0

  • Broniscer A, Hwang SN, Chamdine O, Lin T, Pounds S, Onar-Thomas A, Chi L, Shurtleff S, Allen S, Gajjar A, Northcott P, Orr BA (2018) Bithalamic gliomas may be molecularly distinct from their unilateral high-grade counterparts. Brain Pathol 28(1):112–120. https://doi.org/10.1111/bpa.12484

    Article  CAS  Google Scholar 

  • Cadieux B, Ching TT, VandenBerg SR, Costello JF (2006) Genome-wide hypomethylation in human glioblastomas associated with specific copy number alteration, methylenetetrahydrofolate reductase allele status, and increased proliferation. Cancer Res 66(17):8469–8476. https://doi.org/10.1158/0008-5472.CAN-06-1547

    Article  CAS  Google Scholar 

  • Cahill DP, Louis DN, Cairncross JG (2015) Molecular background of oligodendroglioma: 1p/19q, IDH, TERT, CIC and FUBP1. CNS Oncol 4(5):287–294. https://doi.org/10.2217/cns.15.32

    Article  CAS  Google Scholar 

  • Capper D, Jones DTW, Sill M, Hovestadt V, Schrimpf D, Sturm D, Koelsche C, Sahm F, Chavez L, Reuss DE, Kratz A, Wefers AK, Huang K, Pajtler KW, Schweizer L, Stichel D, Olar A, Engel NW, Lindenberg K, Harter PN, Braczynski AK, Plate KH, Dohmen H, Garvalov BK, Coras R, Holsken A, Hewer E, Bewerunge-Hudler M, Schick M, Fischer R, Beschorner R, Schittenhelm J, Staszewski O, Wani K, Varlet P, Pages M, Temming P, Lohmann D, Selt F, Witt H, Milde T, Witt O, Aronica E, Giangaspero F, Rushing E, Scheurlen W, Geisenberger C, Rodriguez FJ, Becker A, Preusser M, Haberler C, Bjerkvig R, Cryan J, Farrell M, Deckert M, Hench J, Frank S, Serrano J, Kannan K, Tsirigos A, Bruck W, Hofer S, Brehmer S, Seiz-Rosenhagen M, Hanggi D, Hans V, Rozsnoki S, Hansford JR, Kohlhof P, Kristensen BW, Lechner M, Lopes B, Mawrin C, Ketter R, Kulozik A, Khatib Z, Heppner F, Koch A, Jouvet A, Keohane C, Muhleisen H, Mueller W, Pohl U, Prinz M, Benner A, Zapatka M, Gottardo NG, Driever PH, Kramm CM, Muller HL, Rutkowski S, von Hoff K, Fruhwald MC, Gnekow A, Fleischhack G, Tippelt S, Calaminus G, Monoranu CM, Perry A, Jones C, Jacques TS, Radlwimmer B, Gessi M, Pietsch T, Schramm J, Schackert G, Westphal M, Reifenberger G, Wesseling P, Weller M, Collins VP, Blumcke I, Bendszus M, Debus J, Huang A, Jabado N, Northcott PA, Paulus W, Gajjar A, Robinson GW, Taylor MD, Jaunmuktane Z, Ryzhova M, Platten M, Unterberg A, Wick W, Karajannis MA, Mittelbronn M, Acker T, Hartmann C, Aldape K, Schuller U, Buslei R, Lichter P, Kool M, Herold-Mende C, Ellison DW, Hasselblatt M, Snuderl M, Brandner S, Korshunov A, von Deimling A, Pfister SM (2018) DNA methylation-based classification of central nervous system tumours. Nature 555(7697):469–474. https://doi.org/10.1038/nature26000

    Article  CAS  Google Scholar 

  • Carlberg C, Molnár F (2019) Human epigenetics: how science works. Springer (book). https://doi.org/10.1007/978-3-030-22907-8

  • Carvalho S, Vitor AC, Sridhara SC, Martins FB, Raposo AC, Desterro JM, Ferreira J, de Almeida SF (2014) SETD2 is required for DNA double-strand break repair and activation of the p53-mediated checkpoint. Elife 3:e02482. https://doi.org/10.7554/eLife.02482

    Article  CAS  Google Scholar 

  • Castel D, Kergrohen T, Tauziede-Espariat A, Mackay A, Ghermaoui S, Lechapt E, Pfister SM, Kramm CM, Boddaert N, Blauwblomme T, Puget S, Beccaria K, Jones C, Jones DTW, Varlet P, Grill J, Debily MA (2020) Histone H3 wild-type DIPG/DMG overexpressing EZHIP extend the spectrum diffuse midline gliomas with PRC2 inhibition beyond H3–K27M mutation. Acta Neuropathol 139(6):1109–1113. https://doi.org/10.1007/s00401-020-02142-w

    Article  Google Scholar 

  • Castel D, Philippe C, Kergrohen T, Sill M, Merlevede J, Barret E, Puget S, Sainte-Rose C, Kramm CM, Jones C, Varlet P, Pfister SM, Grill J, Jones DTW, Debily MA (2018) Transcriptomic and epigenetic profiling of “diffuse midline gliomas, H3 K27M-mutant” discriminate two subgroups based on the type of histone H3 mutated and not supratentorial or infratentorial location. Acta Neuropathol Commun 6(1):117. https://doi.org/10.1186/s40478-018-0614-1

    Article  CAS  Google Scholar 

  • Chamdine O, Gajjar A (2014) Molecular characteristics of pediatric high-grade gliomas. CNS Oncol 3(6):433–443. https://doi.org/10.2217/cns.14.43

    Article  CAS  Google Scholar 

  • Ciechomska IA, Jayaprakash C, Maleszewska M, Kaminska B (2020) Histone modifying enzymes and chromatin modifiers in glioma pathobiology and therapy responses. Adv Exp Med Biol 1202:259–279. https://doi.org/10.1007/978-3-030-30651-9_13

  • Cimadamore A, Gasparrini S, Scarpelli M, Doria A, Mazzucchelli R, Massari F, Cheng L, Lopez-Beltran A, Montironi R (2017) Epigenetic modifications and modulators in prostate cancer. Crit Rev Oncog 22(5–6):439–450. https://doi.org/10.1615/CritRevOncog.2017020964

  • Cubiles MD, Barroso S, Vaquero-Sedas MI, Enguix A, Aguilera A, Vega-Palas MA (2018) Epigenetic features of human telomeres. Nucleic Acids Res 46(5):2347–2355. https://doi.org/10.1093/nar/gky006

    Article  CAS  Google Scholar 

  • Deb G, Singh AK, Gupta S (2014) EZH2: not EZHY (easy) to deal. Mol Cancer Res 12(5):639–653. https://doi.org/10.1158/1541-7786.MCR-13-0546

    Article  CAS  Google Scholar 

  • Della Monica R, Cuomo M, Visconti R, di Mauro A, Buonaiuto M, Costabile D, De Riso G, Di Risi T, Guadagno E, Tafuto R, Lamia S, Ottaiano A, Cappabianca P, Basso D, de Caro ML, Tatangelo F, Hench J, Frank S, Tafuto S, Chiariotti L (2021) Evaluation of MGMT gene methylation in neuroendocrine neoplasms. Oncol Res. https://doi.org/10.3727/096504021X16214197880808

    Article  Google Scholar 

  • Ellison DW, Aldape KD, Capper D, Fouladi M, Gilbert MR, Gilbertson RJ, Hawkins C, Merchant TE, Pajtler K, Venneti S, Louis DN (2020) cIMPACT-NOW update 7: advancing the molecular classification of ependymal tumors. Brain Pathol 30(5):863–866. https://doi.org/10.1111/bpa.12866

    Article  Google Scholar 

  • Ellison DW, Hawkins C, Jones DTW, Onar-Thomas A, Pfister SM, Reifenberger G, Louis DN (2019) cIMPACT-NOW update 4: diffuse gliomas characterized by MYB, MYBL1, or FGFR1 alterations or BRAF(V600E) mutation. Acta Neuropathol 137(4):683–687. https://doi.org/10.1007/s00401-019-01987-0

    Article  CAS  Google Scholar 

  • Fagnocchi L, Zippo A (2017) Multiple roles of MYC in integrating regulatory networks of pluripotent stem cells. Front Cell Dev Biol 5:7. https://doi.org/10.3389/fcell.2017.00007

  • Feinberg AP, Koldobskiy MA, Gondor A (2016) Epigenetic modulators, modifiers and mediators in cancer aetiology and progression. Nat Rev Genet 17(5):284–299. https://doi.org/10.1038/nrg.2016.13

    Article  CAS  Google Scholar 

  • Flamier A, Abdouh M, Hamam R, Barabino A, Patel N, Gao A, Hanna R, Bernier G (2020) Off-target effect of the BMI1 inhibitor PTC596 drives epithelial-mesenchymal transition in glioblastoma multiforme. NPJ Precis Oncol 4:1. https://doi.org/10.1038/s41698-019-0106-1

    Article  CAS  Google Scholar 

  • Fukuoka K, Mamatjan Y, Tatevossian R, Zapotocky M, Ryall S, Stucklin AG, Bennett J, Nobre LF, Arnoldo A, Luu B, Wen J, Zhu K, Leon A, Torti D, Pugh TJ, Hazrati LN, Laperriere N, Drake J, Rutka JT, Dirks P, Kulkarni AV, Taylor MD, Bartels U, Huang A, Zadeh G, Aldape K, Ramaswamy V, Bouffet E, Snuderl M, Ellison D, Hawkins C, Tabori U (2020) Clinical impact of combined epigenetic and molecular analysis of pediatric low-grade gliomas. Neuro Oncol 22(10):1474–1483. https://doi.org/10.1093/neuonc/noaa077

    Article  CAS  Google Scholar 

  • Funakoshi Y, Hata N, Kuga D, Hatae R, Sangatsuda Y, Fujioka Y, Takigawa K, Mizoguchi M (2021) Pediatric glioma: an update of diagnosis, biology, and treatment. Cancers (Basel) 13(4). https://doi.org/10.3390/cancers13040758

  • Gojo J, Pavelka Z, Zapletalova D, Schmook MT, Mayr L, Madlener S, Kyr M, Vejmelkova K, Smrcka M, Czech T, Dorfer C, Skotakova J, Azizi AA, Chocholous M, Reisinger D, Lastovicka D, Valik D, Haberler C, Peyrl A, Noskova H, Pal K, Jezova M, Veselska R, Kozakova S, Slaby O, Slavc I, Sterba J (2019) Personalized Treatment of H3K27M-Mutant Pediatric Diffuse Gliomas Provides Improved Therapeutic Opportunities. Front Oncol 9:1436. https://doi.org/10.3389/fonc.2019.01436

    Article  Google Scholar 

  • Haase S, Garcia-Fabiani MB, Carney S, Altshuler D, Nunez FJ, Mendez FM, Nunez F, Lowenstein PR, Castro MG (2018) Mutant ATRX: uncovering a new therapeutic target for glioma. Expert Opin Ther Targets 22(7):599–613. https://doi.org/10.1080/14728222.2018.1487953

    Article  CAS  Google Scholar 

  • Hartung EE, Mukhtar SZ, Shah SM, Niles LP (2020) 5-Azacytidine upregulates melatonin MT1 receptor expression in rat C6 glioma cells: oncostatic implications. Mol Biol Rep 47(6):4867–4873. https://doi.org/10.1007/s11033-020-05482-8

    Article  CAS  Google Scholar 

  • Havik AB, Brandal P, Honne H, Dahlback HS, Scheie D, Hektoen M, Meling TR, Helseth E, Heim S, Lothe RA, Lind GE (2012) MGMT promoter methylation in gliomas-assessment by pyrosequencing and quantitative methylation-specific PCR. J Transl Med 10:36. https://doi.org/10.1186/1479-5876-10-36

    Article  CAS  Google Scholar 

  • Henikoff S, McKittrick E, Ahmad K (2004) Epigenetics, histone H3 variants, and the inheritance of chromatin states. Cold Spring Harb Symp Quant Biol 69:235–243. https://doi.org/10.1101/sqb.2004.69.235

    Article  CAS  Google Scholar 

  • Henikoff S, Smith MM (2015) Histone variants and epigenetics. Cold Spring Harb Perspect Biol 7(1):a019364. https://doi.org/10.1101/cshperspect.a019364

    Article  CAS  Google Scholar 

  • Hovestadt V, Jones DT, Picelli S, Wang W, Kool M, Northcott PA, Sultan M, Stachurski K, Ryzhova M, Warnatz HJ, Ralser M, Brun S, Bunt J, Jager N, Kleinheinz K, Erkek S, Weber UD, Bartholomae CC, von Kalle C, Lawerenz C, Eils J, Koster J, Versteeg R, Milde T, Witt O, Schmidt S, Wolf S, Pietsch T, Rutkowski S, Scheurlen W, Taylor MD, Brors B, Felsberg J, Reifenberger G, Borkhardt A, Lehrach H, Wechsler-Reya RJ, Eils R, Yaspo ML, Landgraf P, Korshunov A, Zapatka M, Radlwimmer B, Pfister SM, Lichter P (2014) Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing. Nature 510(7506):537–541. https://doi.org/10.1038/nature13268

    Article  CAS  Google Scholar 

  • Hubner JM, Muller T, Papageorgiou DN, Mauermann M, Krijgsveld J, Russell RB, Ellison DW, Pfister SM, Pajtler KW, Kool M (2019) EZHIP/CXorf67 mimics K27M mutated oncohistones and functions as an intrinsic inhibitor of PRC2 function in aggressive posterior fossa ependymoma. Neuro Oncol 21(7):878–889. https://doi.org/10.1093/neuonc/noz058

    Article  CAS  Google Scholar 

  • Hyun K, Jeon J, Park K, Kim J (2017) Writing, erasing and reading histone lysine methylations. Exp Mol Med 49(4):e324. https://doi.org/10.1038/emm.2017.11

    Article  CAS  Google Scholar 

  • Jones DT, Northcott PA, Kool M, Pfister SM (2013) The role of chromatin remodeling in medulloblastoma. Brain Pathol 23(2):193–199. https://doi.org/10.1111/bpa.12019

    Article  CAS  Google Scholar 

  • Jones PA (2012) Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat Rev Genet 13(7):484–492. https://doi.org/10.1038/nrg3230

    Article  CAS  Google Scholar 

  • Karimi S, Zuccato JA, Mamatjan Y, Mansouri S, Suppiah S, Nassiri F, Diamandis P, Munoz DG, Aldape KD, Zadeh G (2019) The central nervous system tumor methylation classifier changes neuro-oncology practice for challenging brain tumor diagnoses and directly impacts patient care. Clin Epigenetics 11(1):185. https://doi.org/10.1186/s13148-019-0766-2

    Article  Google Scholar 

  • Kim KH, Roberts CW (2014) Mechanisms by which SMARCB1 loss drives rhabdoid tumor growth. Cancer Genet 207(9):365–372. https://doi.org/10.1016/j.cancergen.2014.04.004

    Article  CAS  Google Scholar 

  • Kim YZ (2014) Altered histone modifications in gliomas. Brain Tumor Res Treat 2(1):7–21. https://doi.org/10.14791/btrt.2014.2.1.7

    Article  Google Scholar 

  • Koschmann C, Calinescu AA, Nunez FJ, Mackay A, Fazal-Salom J, Thomas D, Mendez F, Kamran N, Dzaman M, Mulpuri L, Krasinkiewicz J, Doherty R, Lemons R, Brosnan-Cashman JA, Li Y, Roh S, Zhao L, Appelman H, Ferguson D, Gorbunova V, Meeker A, Jones C, Lowenstein PR, Castro MG (2016) ATRX loss promotes tumor growth and impairs nonhomologous end joining DNA repair in glioma. Sci Transl Med 8 (328):328ra328. https://doi.org/10.1126/scitranslmed.aac8228

  • Kosty J, Lu F, Kupp R, Mehta S, Lu QR (2017) Harnessing OLIG2 function in tumorigenicity and plasticity to target malignant gliomas. Cell Cycle 16(18):1654–1660. https://doi.org/10.1080/15384101.2017.1361062

    Article  CAS  Google Scholar 

  • Kumar SS, Sengupta S, Lee K, Hura N, Fuller C, DeWire M, Stevenson CB, Fouladi M, Drissi R (2017) BMI-1 is a potential therapeutic target in diffuse intrinsic pontine glioma. Oncotarget 8(38):62962–62975. https://doi.org/10.18632/oncotarget.18002

    Article  Google Scholar 

  • Laugesen A, Hojfeldt JW, Helin K (2016) Role of the Polycomb Repressive Complex 2 (PRC2) in Transcriptional regulation and cancer. Cold Spring Harb Perspect Med 6(9). https://doi.org/10.1101/cshperspect.a026575

  • Lim KY, Won JK, Park CK, Kim SK, Choi SH, Kim T, Yun H, Park SH (2021) H3 G34-mutant high-grade glioma. Brain Tumor Pathol 38(1):4–13. https://doi.org/10.1007/s10014-020-00378-8

    Article  CAS  Google Scholar 

  • Louis DN, Giannini C, Capper D, Paulus W, Figarella-Branger D, Lopes MB, Batchelor TT, Cairncross JG, van den Bent M, Wick W, Wesseling P (2018) cIMPACT-NOW update 2: diagnostic clarifications for diffuse midline glioma, H3 K27M-mutant and diffuse astrocytoma/anaplastic astrocytoma, IDH-Mutant. Acta Neuropathol 135(4):639–642. https://doi.org/10.1007/s00401-018-1826-y

  • Louis DN, Perry A, Wesseling P. Brat DJ, Cree IA, Figarella-Branger D, Hawkins C, Ng HK, Pfister SM, Reifenberger G, Soffietti R, von Deimling A, Ellison DW (2021) The 2021 WHO classification of tumors of the central nervous system: a summary 23(8):1231–1251. https://doi.org/10.1093/neuonc/noab106

  • Louis DN, Wesseling P, Aldape K, Brat DJ, Capper D, Cree IA, Eberhart C, Figarella-Branger D, Fouladi M, Fuller GN, Giannini C, Haberler C, Hawkins C, Komori T, Kros JM, Ng HK, Orr BA, Park SH, Paulus W, Perry A, Pietsch T, Reifenberger G, Rosenblum M, Rous B, Sahm F, Sarkar C, Solomon DA, Tabori U, van den Bent MJ, von Deimling A, Weller M, White VA, Ellison DW (2020) cIMPACT-NOW update 6: new entity and diagnostic principle recommendations of the cIMPACT-Utrecht meeting on future CNS tumor classification and grading. Brain Pathol 30(4):844–856. https://doi.org/10.1111/bpa.12832

    Article  Google Scholar 

  • Lu VM, O’Connor KP, Shah AH, Eichberg DG, Luther EM, Komotar RJ, Ivan ME (2020) The prognostic significance of CDKN2A homozygous deletion in IDH-mutant lower-grade glioma and glioblastoma: a systematic review of the contemporary literature. J Neurooncol 148(2):221–229. https://doi.org/10.1007/s11060-020-03528-2

    Article  CAS  Google Scholar 

  • Mack SC, Witt H, Piro RM, Gu L, Zuyderduyn S, Stutz AM, Wang X, Gallo M, Garzia L, Zayne K, Zhang X, Ramaswamy V, Jager N, Jones DT, Sill M, Pugh TJ, Ryzhova M, Wani KM, Shih DJ, Head R, Remke M, Bailey SD, Zichner T, Faria CC, Barszczyk M, Stark S, Seker-Cin H, Hutter S, Johann P, Bender S, Hovestadt V, Tzaridis T, Dubuc AM, Northcott PA, Peacock J, Bertrand KC, Agnihotri S, Cavalli FM, Clarke I, Nethery-Brokx K, Creasy CL, Verma SK, Koster J, Wu X, Yao Y, Milde T, Sin-Chan P, Zuccaro J, Lau L, Pereira S, Castelo-Branco P, Hirst M, Marra MA, Roberts SS, Fults D, Massimi L, Cho YJ, Van Meter T, Grajkowska W, Lach B, Kulozik AE, von Deimling A, Witt O, Scherer SW, Fan X, Muraszko KM, Kool M, Pomeroy SL, Gupta N, Phillips J, Huang A, Tabori U, Hawkins C, Malkin D, Kongkham PN, Weiss WA, Jabado N, Rutka JT, Bouffet E, Korbel JO, Lupien M, Aldape KD, Bader GD, Eils R, Lichter P, Dirks PB, Pfister SM, Korshunov A, Taylor MD (2014) Epigenomic alterations define lethal CIMP-positive ependymomas of infancy. Nature 506(7489):445–450. https://doi.org/10.1038/nature13108

    Article  CAS  Google Scholar 

  • Majd NK, Yap TA, Koul D, Balasubramaniyan V, Li X, Khan S, Gandy KS, Yung WKA, de Groot JF (2021) The promise of DNA damage response inhibitors for the treatment of glioblastoma. Neurooncol Adv 3 (1):vdab015. https://doi.org/10.1093/noajnl/vdab015

  • Mirchia K, Richardson TE (2020) Beyond IDH-Mutation: emerging molecular diagnostic and prognostic features in adult diffuse gliomas. Cancers (Basel) 12(7). https://doi.org/10.3390/cancers12071817

  • Mondal G, Lee JC, Ravindranathan A, Villanueva-Meyer JE, Tran QT, Allen SJ, Barreto J, Gupta R, Doo P, Van Ziffle J, Onodera C, Devine P, Grenert JP, Samuel D, Li R, Metrock LK, Jin LW, Antony R, Alashari M, Cheshier S, Whipple NS, Bruggers C, Raffel C, Gupta N, Kline CN, Reddy A, Banerjee A, Hall MD, Mehta MP, Khatib Z, Maher OM, Brathwaite C, Pekmezci M, Phillips JJ, Bollen AW, Tihan T, Lucas JT Jr, Broniscer A, Berger MS, Perry A, Orr BA, Solomon DA (2020a) Pediatric bithalamic gliomas have a distinct epigenetic signature and frequent EGFR exon 20 insertions resulting in potential sensitivity to targeted kinase inhibition. Acta Neuropathol 139(6):1071–1088. https://doi.org/10.1007/s00401-020-02155-5

    Article  CAS  Google Scholar 

  • Mondal G, Lee JC, Ravindranathan A, Villanueva-Meyer JE, Tran QT, Allen SJ, Barreto J, Gupta R, Doo P, Van Ziffle J, Onodera C, Devine P, Grenert JP, Samuel D, Li R, Metrock LK, Jin LW, Antony R, Alashari M, Cheshier S, Whipple NS, Bruggers C, Raffel C, Gupta N, Kline CN, Reddy A, Banerjee A, Hall MD, Mehta MP, Khatib Z, Maher OM, Brathwaite C, Pekmezci M, Phillips JJ, Bollen AW, Tihan T, Lucas JT Jr, Broniscer A, Berger MS, Perry A, Orr BA, Solomon DA (2020b) Pediatric bithalamic gliomas have a distinct epigenetic signature and frequent EGFR exon 20 insertions resulting in potential sensitivity to targeted kinase inhibition. Acta Neuropathol. https://doi.org/10.1007/s00401-020-02155-5

    Article  Google Scholar 

  • Nagarajan RP, Costello JF (2009) Molecular epigenetics and genetics in neuro-oncology. Neurotherapeutics 6(3):436–446. https://doi.org/10.1016/j.nurt.2009.04.002

    Article  CAS  Google Scholar 

  • Natsume A, Kondo Y, Ito M, Motomura K, Wakabayashi T, Yoshida J (2010) Epigenetic aberrations and therapeutic implications in gliomas. Cancer Sci 101(6):1331–1336. https://doi.org/10.1111/j.1349-7006.2010.01545.x

    Article  CAS  Google Scholar 

  • Noushmehr H, Weisenberger DJ, Diefes K, Phillips HS, Pujara K, Berman BP, Pan F, Pelloski CE, Sulman EP, Bhat KP, Verhaak RG, Hoadley KA, Hayes DN, Perou CM, Schmidt HK, Ding L, Wilson RK, Van Den Berg D, Shen H, Bengtsson H, Neuvial P, Cope LM, Buckley J, Herman JG, Baylin SB, Laird PW, Aldape K, Cancer Genome Atlas Research N (2010) Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma. Cancer Cell 17(5):510–522. https://doi.org/10.1016/j.ccr.2010.03.017

  • Ohm JE, McGarvey KM, Yu X, Cheng L, Schuebel KE, Cope L, Mohammad HP, Chen W, Daniel VC, Yu W, Berman DM, Jenuwein T, Pruitt K, Sharkis SJ, Watkins DN, Herman JG, Baylin SB (2007) A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing. Nat Genet 39(2):237–242. https://doi.org/10.1038/ng1972

    Article  CAS  Google Scholar 

  • Oleksiewicz U, Machnik M (2020) Causes, effects, and clinical implications of perturbed patterns within the cancer epigenome. Semin Cancer Biol. https://doi.org/10.1016/j.semcancer.2020.12.014

    Article  Google Scholar 

  • Park JW, Kang J, Lim KY, Kim H, Kim SI, Won JK, Park CK, Park SH (2021) The prognostic significance of p16 expression pattern in diffuse gliomas. J Pathol Transl Med 55(2):102–111. https://doi.org/10.4132/jptm.2020.10.22

    Article  Google Scholar 

  • Perla A, Fratini L, Cardoso PS, Nor C, Brunetto AT, Brunetto AL, de Farias CB, Jaeger M, Roesler R (2020) Histone deacetylase inhibitors in pediatric brain cancers: biological activities and therapeutic potential. Front Cell Dev Biol 8:546. https://doi.org/10.3389/fcell.2020.00546

  • Pugh TJ, Weeraratne SD, Archer TC, Pomeranz Krummel DA, Auclair D, Bochicchio J, Carneiro MO, Carter SL, Cibulskis K, Erlich RL, Greulich H, Lawrence MS, Lennon NJ, McKenna A, Meldrim J, Ramos AH, Ross MG, Russ C, Shefler E, Sivachenko A, Sogoloff B, Stojanov P, Tamayo P, Mesirov JP, Amani V, Teider N, Sengupta S, Francois JP, Northcott PA, Taylor MD, Yu F, Crabtree GR, Kautzman AG, Gabriel SB, Getz G, Jager N, Jones DT, Lichter P, Pfister SM, Roberts TM, Meyerson M, Pomeroy SL, Cho YJ (2012) Medulloblastoma exome sequencing uncovers subtype-specific somatic mutations. Nature 488(7409):106–110. https://doi.org/10.1038/nature11329

    Article  CAS  Google Scholar 

  • Qureshi IA, Mehler MF (2011) Epigenetics, nervous system tumors, and cancer stem cells. Cancers (basel) 3(3):3525–3556. https://doi.org/10.3390/cancers3033525

    Article  CAS  Google Scholar 

  • Raschke S, Balz V, Efferth T, Schulz WA, Florl AR (2005) Homozygous deletions of CDKN2A caused by alternative mechanisms in various human cancer cell lines. Genes Chromosomes Cancer 42(1):58–67. https://doi.org/10.1002/gcc.20119

    Article  CAS  Google Scholar 

  • Roy DM, Walsh LA, Chan TA (2014) Driver mutations of cancer epigenomes. Protein Cell 5(4):265–296. https://doi.org/10.1007/s13238-014-0031-6

    Article  CAS  Google Scholar 

  • Sahebjam S, McNamara MG, Mason WP (2013) Emerging biomarkers in anaplastic oligodendroglioma: implications for clinical investigation and patient management. CNS Oncol 2(4):351–358. https://doi.org/10.2217/cns.13.26

    Article  CAS  Google Scholar 

  • Sakatani T, Kaneda A, Iacobuzio-Donahue CA, Carter MG, de Boom WS, Okano H, Ko MS, Ohlsson R, Longo DL, Feinberg AP (2005) Loss of imprinting of Igf2 alters intestinal maturation and tumorigenesis in mice. Science 307(5717):1976–1978. https://doi.org/10.1126/science.1108080

    Article  CAS  Google Scholar 

  • Shakya A, Callister C, Goren A, Yosef N, Garg N, Khoddami V, Nix D, Regev A, Tantin D (2015) Pluripotency transcription factor Oct4 mediates stepwise nucleosome demethylation and depletion. Mol Cell Biol 35(6):1014–1025. https://doi.org/10.1128/MCB.01105-14

    Article  CAS  Google Scholar 

  • Sippl C, Urbschat S, Kim YJ, Senger S, Oertel J, Ketter R (2018) Promoter methylation of RB1, P15, P16, and MGMT and their impact on the clinical course of pilocytic astrocytomas. Oncol Lett 15(2):1600–1606. https://doi.org/10.3892/ol.2017.7490

    Article  CAS  Google Scholar 

  • Sturm D, Bender S, Jones DT, Lichter P, Grill J, Becher O, Hawkins C, Majewski J, Jones C, Costello JF, Iavarone A, Aldape K, Brennan CW, Jabado N, Pfister SM (2014) Paediatric and adult glioblastoma: multiform (epi)genomic culprits emerge. Nat Rev Cancer 14(2):92–107. https://doi.org/10.1038/nrc3655

    Article  CAS  Google Scholar 

  • Toh TB, Lim JJ, Chow EK (2017) Epigenetics in cancer stem cells. Mol Cancer 16(1):29. https://doi.org/10.1186/s12943-017-0596-9

    Article  CAS  Google Scholar 

  • Viaene AN, Santi M, Rosenbaum J, Li MM, Surrey LF, Nasrallah MP (2018) SETD2 mutations in primary central nervous system tumors. Acta Neuropathol Commun 6(1):123. https://doi.org/10.1186/s40478-018-0623-0

    Article  CAS  Google Scholar 

  • Wang HW, Wu YH, Hsieh JY, Liang ML, Chao ME, Liu DJ, Hsu MT, Wong TT (2010) Pediatric primary central nervous system germ cell tumors of different prognosis groups show characteristic miRNome traits and chromosome copy number variations. BMC Genomics 11:132. https://doi.org/10.1186/1471-2164-11-132

    Article  CAS  Google Scholar 

  • Wang MC, Li CL, Cui J, Jiao M, Wu T, Jing LI, Nan KJ (2015a) BMI-1, a promising therapeutic target for human cancer. Oncol Lett 10(2):583–588. https://doi.org/10.3892/ol.2015.3361

    Article  CAS  Google Scholar 

  • Wang W, Qin JJ, Voruganti S, Nag S, Zhou J, Zhang R (2015b) Polycomb group (PcG) proteins and human cancers: multifaceted functions and therapeutic implications. Med Res Rev 35(6):1220–1267. https://doi.org/10.1002/med.21358

  • Was H, Krol SK, Rotili D, Mai A, Wojtas B, Kaminska B, Maleszewska M (2019) Histone deacetylase inhibitors exert anti-tumor effects on human adherent and stem-like glioma cells. Clin Epigenetics 11(1):11. https://doi.org/10.1186/s13148-018-0598-5

    Article  Google Scholar 

  • Ye X, Liu X, Gao M, Gong L, Tian F, Shen Y, Hu H, Sun G, Zou Y, Gong Y (2021) CUL4B promotes temozolomide resistance in gliomas by epigenetically repressing CDNK1A transcription. Front Oncol 11:638802. https://doi.org/10.3389/fonc.2021.638802

  • Yi J, Wu J (2018) Epigenetic regulation in medulloblastoma. Mol Cell Neurosci 87:65–76. https://doi.org/10.1016/j.mcn.2017.09.003

    Article  CAS  Google Scholar 

  • Yuan X, Xu D (2019) Telomerase reverse transcriptase (TERT) in action: cross-talking with epigenetics. Int J Mol Sci 20(13). https://doi.org/10.3390/ijms20133338

  • Zhu H, Wei T, Cai Y, Jin J (2020) Small molecules targeting the specific domains of histone-mark readers in cancer therapy. Molecules 25(3). https://doi.org/10.3390/molecules25030578

  • Zhu Z, Wu X, Li Q, Zhang J, Yu S, Shen Q, Zhou Z, Pan Q, Yue W, Qin D, Zhang Y, Zhao W, Zhang R, Peng S, Li N, Zhang S, Lei A, Miao YL, Liu Z, Chen X, Wang H, Liao M, Hua J (2021) Histone demethylase complexes KDM3A and KDM3B cooperate with OCT4/SOX2 to define a pluripotency gene regulatory network. FASEB J 35(6):e21664. https://doi.org/10.1096/fj.202100230R

    Article  CAS  Google Scholar 

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Park, SH. (2023). The Role of Epigenetics in Brain and Spinal Cord Tumors. In: Rezaei, N., Hanaei, S. (eds) Human Brain and Spinal Cord Tumors: From Bench to Bedside. Volume 1. Advances in Experimental Medicine and Biology, vol 1394. Springer, Cham. https://doi.org/10.1007/978-3-031-14732-6_8

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