Abstract
Apoptosis is a distinct form of cell death. Originally defined by cellular morphology, apoptosis can now be characterized at molecular, biochemical, and cellular levels. Detection of apoptosis has become more important, not only because of scientific interests but also because of the significance in clinical practice. For example, because apoptosis has been implicated in the development of a variety of devastating diseases such as cancer, a therapeutic approach using apoptosis-inducing drugs is expected. To evaluate the effectiveness of the treatment, one may have to assess the apoptotic response following the treatment. In typical apoptosis, a set of cell structure and biochemical characteristics has been well-defined. In combination, these provide the basis for apoptosis detection in a given setting. The methodology for analyzing these characteristics is as diverse as the research subjects. Several books devoted to the methodology of apoptosis analysis have been published recently (1–3). Readers are advised to review the detailed experimental protocols in these books. This chapter aims to provide an overview of the basic approaches used in analyzing apoptosis, the principles, and the basic methodology, in order to provide a quick reference guide that readers can use to decide what method is available for their own studies. We start with the determination of cell viability and the morphology of dying cells. We then discuss the approaches available to examine apoptotic changes on the cell membrane, in both the cytosol and nucleus.
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Reed, J. C., Abelson, J. N., and Simon, M. I. (2000) Apoptosis, In: Methods in Enzymology vol. 322 (Reed, J. C., Abelson, J. N., and Simon, M. I., eds.), Academic Press, San Diego, CA.
Schwartz, L., Ashwell, J., Wilson, L., and Matsudairaand, P. (2001) Apoptosis, In: Methods Cell Biology vol. 66 (Schwartz, L., Ashwell, J., Wilson, L., and Matsudairaand, P.), Academic Press, San Diego, CA.
LeBlanc, A. C. (2002) Neuromethods, In: Apoptosis: Techniques and Protocols, 2nd ed., vol. 37 ( LeBlanc, A. C., ed.), Humana Press, Totowa, NJ.
Dong, Z., Venkatachalam, M. A., Weinberg, J. M., Saikumar, P., and Patel, Y. (2001) Protection of ATP-depleted cells by impermeant strychnine derivatives: implications for glycine cytoprotection. Am. J. Pathol. 158, 1021–1028.
Dong, Z., Patel, Y., Saikumar, P., Weinberg J. M., and Venkatachalam, M. A. (1998) Development of porous defects in plasma membranes of adenosine triphosphate-depleted madin-darby canine kidney cells and its inhibition by glycine. Lab. Invest. 78, 657–668.
Kerr, J. F., Wyllie, A. H., and Currie, A. R. (1972) Apoptosis: a basic biological phenomenon with wide-ranging implications in tissue kinetics. Br. J. Cancer 26, 239–257.
Savill, J. and Fadok, V. (2000) Corpse clearance defines the meaning of cell death. Nature 407, 784–788.
Williamson, P., Eijnde van den, S., and Schlegel, R. A. (2001) Phosphatidylserine exposure and phagocytosis of apoptotic cells. Methods Cell Biol. 66, 339–364.
Roy, S. and Nicholson, D.W. (2000) Criteria for identifying authentic caspase substrates during apoptosis. Methods Enzymol. 322, 110–125.
Stennicke, H. R. and Salvesen, G. S. (2000) Caspase assays. Methods Enzymol. 322, 91–100.
Cao, G., Pei, W., Lan, J., Stetler, Y. R., Nagayama, A., Luo, T., et al. (2001) Caspase-activated DNase/DNA fragmentation factor 40 mediates apoptotic DNA fragmentation in transient cerebral ischemia and in neuronal cultures. J. Neurosci. 21, 4678–4690.
Komoriya, A., Packard, B. Z., Brown, M. J., Wu, M-L., and Henkart, P. A. (2000) Assessment of caspase activities in intact apoptotic thymocytes using cell-permeable fluorogenic caspase substrates. J. Exp. Med. 191, 1819–1828.
Gross, A., Jockel, J., Wei, M. C., and Korsmeyer, S. J. (1998) Enforced dimerization of Bax results in its translocation, mitochondrial dysfunction and apoptosis. EMBO J. 17, 3878–3885.
Eskes, R., Desagher, S., Antonsson B., and Martinou, J. C. (2000) Bid induces the oligomerization and insertion of Bax into the outer mitochondrial membrane. Mol. Cell. Biol. 20, 929–935.
Wei, M. C., Lindsten, V. T., Mootha, S., Weiler, K. A., Gross, A., Ashiya, M., Thompson, C. B., and Korsmeyer, S. J. (2000) Bid, a membrane-targeted death ligand, oligomerizes Bak to release cytochrome c. Genes Dev. 14, 2060–2071.
Desagher, S., Osen-Sand, A., Nichols, A., Eskes, R., Montessuit, S., Lauper, S., et al. (1999) Bid-induced conformational change of Bax is responsible for mitochondrial cytochrome c release during apoptosis. J. Cell. Biol. 144, 891–901.
Zhao, Y., Li, S., Childs, E. E., Kuharsky D. K., and Yin, X. M. (2001) Activation of pro-death bcl-2 family proteins and mitochondria apoptosis pathway in TNFa-induced liver injury. J. Biol. Chem. 276, 27432–27440.
Lemasters, J. J., Qian, T., Elmore, S. P., Trost, L. C., Nishimura, Y., Herman, B., et al. (1998) Confocal microscopy of the mitochondrial permeability transition in necrotic cell killing, apoptosis and autophagy. Biofactors 8, 283–285.
Reynolds, I. J. (1999) Mitochondrial membrane potential and the permeability transition in excitotoxicity. Ann. NY Acad. Sci. 893, 33–41.
Matsuyama, S. and Reed, J. C. (2000) Mitochondria-dependent apoptosis and cellular pH regulation. Cell Death Differ. 7, 1155–1165.
Hsu, Y. T., Wolter, K. G., and Youle, R. J. (1997) Cytosol-to-membrane redistribution of Bax and Bcl-X(L) during apoptosis. Proc. Natl. Acad. Sci. USA 94, 3668–3672.
Ott, M., Robertson, J. D., Gogvadze, V., Zhivotovsky B., and Orrenius, S. (2002) Cytochrome c release from mitochondria proceeds by a two-step process. PNAS 99, 1259–1263.
Gross, A., Yin, X. M., Wang, K., Wei, M. C., Jockel, J., Milliman, C., et al. (1999) Caspase cleaved Bid targets mitochondria and is required for cytochrome c release, while Bcl-XL prevents this release but not tumor necrosis factorr1/fas death. J. Biol. Chem. 274, 1156–1163.
Kamo, N., Muratsugu, M., Hongoh, R., and Kobatake, Y. (1979) Membrane potential of mitochondria measured with an electrode sensitive to tetraphenyl phosphonium and relationship between proton electrochemical potential and phosphorylation potential in steady state. J. Membr. Biol. 49, 105–1021.
Zamzami, N., Metivier D., and Kroemer, G. (2000) Quantitation of mitochondrial transmembrane potential in cells and in isolated mitochondria. Methods Enzymol. 322, 208–213.
Cossarizza, A. and Salvioli, S. (2001) Analysis of mitochondria during cell death. Methods Cell Biol. 63, 467–486.
Cossarizza, A., Baccarani-Contri, M., Kalashnikova G., and Franceschi, C. (1993) A new method for the cytofluorimetric analysis of mitochondrial membrane potential using the j-aggregate forming lipophilic cation 5,5’,6,6’-tetrachloro-1, 1’,3,3’-tetraethylbenzimidazolcarbocyanine iodide (JC-1). Biochem. Biophys. Res. Commun. 197, 40–45.
Bernardi, P., Scorrano, L., Colonna, R. V., Petronilli, V., and Di Lisa, F. (1999) Mitochondria and cell death. Mechanistic aspects and methodological issues (published erratum appears in Eur. J Biochem. 1999;265(2), 847). Eur. J. Biochem. 264, 687–701.
Salvioli, S., Ardizzoni, A., Franceschi C., and Cossarizza, A. (1997) JC-1, but not DiOC6(3) or rhodamine 123, is a reliable fluorescent probe to assess delta psi changes in intact cells: implications for studies on mitochondrial functionality during apoptosis. FEBS Lett. 411, 77–82.
Scorrano, L., Petronilli, V., Colonna, R., Di Lisa F., and Bernardi, P. (1999) Chloromethyltetramethylrosamine (mitotracker orange) induces the mitochondrial permeability transition and inhibits respiratory complex I. Implications for the mechanism of cytochrome c release. J. Biol. Chem. 274, 24657–24663.
Wyllie, A. H. (1980) Glucocorticoid-induced thymocyte apoptosis is associated with endogenous endonuclease activation. Nature 284, 555–556.
Loo, D. T. and Rillema, J. R. (1998) Measurement of cell death. Methods Cell Biol. 57, 251–264.
Wyllie, A. (1998) Apoptosis. An endonuclease at last. Nature 391, 20–21.
Dong, Z., Saikumar, P., Weinberg, J. M., and Venkatachalam, M. A. (1997) Internucleosomal DNA cleavage triggered by plasma membrane damage during necrotic cell death. Involvement of serine but not cysteine proteases. Am. J. Pathol. 151, 1205–1213.
Collins, R. J., Harmon, B. V., Gobe, G. C., and Kerr, J. F. (1992) Internucleosomal DNA cleavage should not be the sole criterion for identifying apoptosis. Int. J. Radiat. Biol. 61, 451–453.
Oberhammer, F., Wilson, J. W., Dive, C., Morris, I. D., Hickman, J. A., Wakeling, A. E., et al. (1993) Apoptotic death in epithelial cells: cleavage of DNA to 300 and/or 50 kb fragments prior to or in the absence of internucleosomal fragmentation. EMBO J. 12, 3679–3684.
Darzynkiewicz, Z., Li X., and Bedner, E. (2001) Use of flow and laser-scanning cytometry in analysis of cell death. Methods Cell Biol. 66, 69–109.
Li, Y., Sharov, V. G., Jiang, N., Zaloga, C., Sabbah, H., and Chopp, M. (1995) Ultrastructural and light microscopic evidence of apoptosis after middle cerebral artery occlusion in the rat. Am. J. Pathol. 146, 1045–1051.
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Bai, L., Wang, J., Yin, XM., Dong, Z. (2003). Analysis of Apoptosis. In: Yin, XM., Dong, Z. (eds) Essentials of Apoptosis. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-59259-361-3_16
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DOI: https://doi.org/10.1007/978-1-59259-361-3_16
Publisher Name: Humana Press, Totowa, NJ
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