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Using genetic markers in unpedigreed populations to detect a heritable trait

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Abstract

Before a breeder invests selection pressure on a trait of interest, it needs to be established whether that trait is actually heritable. Some traits may not have been measured widely in pedigreed populations, for example, a discase or deformity may become more prevalent than previously, but is still relatively rare. One approach to detect inheritance would be to screen a commercial population to obtain a sample of “affecteds” (the test group) and to also obtain a random control group. These individuals are then genotyped with a set of genetic markers and the relationships between individuals within each group estimated. If the relatedness is higher in the test group than in the control group, this provides initial evidence for the trait being heritable. A power simulation shows that this approach is feasible with moderate resources.

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References

  • Ayres, K.L., Overall, A.D.J., 2004. Api-calc 1.0: a computer program for calculating the average probability of identity allowing for substructure, inbreeding and the presence of close relatives. Molecular Ecology Notes, 4(2):315–318. [doi:10.1111/j.1471-8286.2004.00616.x]

    Article  CAS  Google Scholar 

  • Balding, D.J., 2006. A tutorial on statistical methods for population association studies. Nature Reviews Genetics, 7(10):781–791. [doi:10.1038/nrg1916]

    Article  PubMed  CAS  Google Scholar 

  • Blouin, M.S., 2003. DNA-based methods for pedigree reconstruction and kinship analysis in natural populations. Trends in Ecology and Evolution, 18(10):503–511. [doi:10.1016/S0169-5347(03)00225-8]

    Article  Google Scholar 

  • Coltman, D.W., 2005. Testing marker-based estimates of heritability in the wild. Molecular Ecology, 14(8):2593–2599. [doi:10.1111/j.1365-294X.2005.02600.x]

    Article  PubMed  CAS  Google Scholar 

  • Manly, B.F.J., 1997. Randomization, Bootstrap and Monte Carlo Methods in Biology. Chapman & Hall, London, p. 1–23.

    Google Scholar 

  • Milligan, B.G., 2003. Maximum-likelihood estimation of relatedness. Genetics, 163(3):1153–1167.

    PubMed  Google Scholar 

  • Oliehoek, P.A., Windig, J.J., van Arendonk, J.A.M., Bijma, P., 2006. Estimating relatedness between individuals in general populations with a focus on their use in conservation programs. Genetics, 173(1):483–496. [doi:10.1534/genetics.105.049940]

    Article  PubMed  CAS  Google Scholar 

  • Queller, D.C., Goodnight, K.F., 1989. Estimating relatedness using genetic markers. Evolution, 43(2):258–275. [doi:10.2307/2409206]

    Article  Google Scholar 

  • Taberlet, P., Luikart, G., 1999. Non-invasive genetic sampling and individual identification. Biological Journal of the Linnean Society, 68(1–2):41–55. [doi:10.1006/bijl.1999.0329]

    Article  Google Scholar 

  • Thomas, S.C., 2005. The estimation of genetic relationships using molecular markers and their efficiency in estimating heritability in natural populations. Philosophical Transactions of the Royal Society B: Biological Sciences, 360(1459):1457–1467. [doi:10.1098/rstb.2005.1675]

    Article  CAS  Google Scholar 

  • Thomas, S.C., Hill, W.G., 2002. Sibship reconstruction in hierarchical population structures using Markov chain Monte Carlo techniques. Genetical Research, 79(3): 227–234. [doi:10.1017/S0016672302005669]

    Article  PubMed  Google Scholar 

  • van de Casteele, T., Galbusera, P., Matthysen, E., 2001. A comparison of microsatellite-based pairwise relatedness estimators. Molecular Ecology, 10(6): 1539–1549. [doi:10.1046/j.1365-294X.2001.01288.x]

    Article  PubMed  Google Scholar 

  • Wang, J., 2002. An estimator for pariwise relatedness using molecular markers. Genetics, 160(3):1203–1215.

    PubMed  CAS  Google Scholar 

  • Weir, B.S., Anderson, A.D., Hepler, A.B., 2006. Genetic relatedness analysis: modern data and new challenges. Nature Reviews Genetics, 7(10):771–780. [doi:10.1038/nrg1960]

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Dodds Ken G..

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Dodds, K.G., Amer, P.R. & Auvray, B. Using genetic markers in unpedigreed populations to detect a heritable trait. J. Zhejiang Univ. - Sci. B 8, 782–786 (2007). https://doi.org/10.1631/jzus.2007.B0782

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  • DOI: https://doi.org/10.1631/jzus.2007.B0782

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