Skip to main content
Log in

Rapid single-base mismatch detection in genotyping for phenylketonuria

  • Research
  • Published:
Molecular Biotechnology Aims and scope Submit manuscript

Abstract

Phenylketonuria (PKU) is a metabolic disorder that results from a deficiency of hepatic phenylalanine hydroxylase (PAH). Identification of the PKU genotype is useful for predicting clinical PKU phenotype. More than 400 mutations resulting in PAH deficiency have been reported worldwide. We used a genedetecting instrument to identify the nine prevalent Japanese mutations in the PAH gene among 31 PKU patients as a preliminary study. This instrument can automatically detect mutations through the use of allele-specific oligonucleotide (ASO) capture probes, and gave results comparable to those of sequencing studies. Each country has uniquely prevalent and specific mutations causing PKU, and less than 50 types of such mutations are generally present in each country. Early genotyping of PKU makes it possible to identify the phenotype and select the optimal therapy for the disease. For early genotyping, the instrumental method described here shortens the time required for genotyping based on mRNA and/or genomic DNA of PKU parents.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Scriver, C. R., Kaufman, S., Eisensmith, R. C., and Woo, S. L. C. (1995) The hyperphenylalaninemias. In: The metabolic and molecular basis of inherited disease, 7th ed. (Scriver, C. R., Beaudet, A. L., Sly, W. S., and Valle, D. eds.), McGraw-Hill, New York, pp. 1015–1075.

    Google Scholar 

  2. Aoki, K. and Wada, Y. (1988) Outcome of the patients detected by new-born screening in Japan. Acta Paediatr. Jpn. 30, 429–434.

    PubMed  CAS  Google Scholar 

  3. Scriver, C. R., Kaufman, S., and Woo, S. L. C. (1989) The hyperphenylalaninemias. In: The Metabolic and Molecular Basis of Inherited Disease 6th ed., (Scriver, C. R., Beaudet, A. L., Sly, W. S., and Valle, D. eds.), McGraw- Hill, New York, pp. 495–546.

    Google Scholar 

  4. Liu, S. R. and Zuo, Q. H. (1986) Newborn screening for phenylketonuria in eleven districts. Chin. Med. J. 99, 113–118.

    PubMed  CAS  Google Scholar 

  5. Woo, S. L. C., Lidsky, A. S., Guttler, F., et al. (1983) Cloned human phenylalanine hydroxylase gene allows prenatal diagnosis and carrier detection of classical phenylketonuria. Nature 306, 151–155.

    Article  PubMed  CAS  Google Scholar 

  6. Kowk, S. C.M., Ledley, F. D., Dilella, A. G., et al. (1985) Nucleotide sequence of a full-length complementary DNA clone and amino acid sequence of human phenylalanine hydroxylase. Biochemistry 24, 556–561.

    Article  Google Scholar 

  7. Phenylalanine Hydroxylase Locus Knowledgebase Home Page. http://data.mch.mcgill.ca/pahdb_new/

  8. Okano, Y., Asada, M., Kang, Y., et al. (1998) Molecular characterization of phenylketonuria in Japanese patients. Hum. Genet. 103, 613–618.

    Article  PubMed  CAS  Google Scholar 

  9. Guldberg, P., Henriksen, K. F., Thony, B., Blau, N., and Guttler, F. (1994) Moleculer heterogeneity of nonphenylketonuria hyperphenylalaninemia in 25 Danish patients. Genomics 21, 453–455.

    Article  PubMed  CAS  Google Scholar 

  10. Guldberg, P., Levy, H. L., Hanley, W. B., et al. (1996) Phenylalanine hydroxylase gene mutations in the United States: report from the Maternal PKU Collaborative Study. Am. J. Hum. Genet. 59, 84–94.

    PubMed  CAS  Google Scholar 

  11. Guldberg, P., Rey, F., Zschocke, J., et al. (1998) A European multicenter study of phenylalanine hydroxylase deficiency: classification of 105 mutations and a general system for genotype-based prediction of metaboric phenotype. Am. J. Hum. Genet. 63, 771–779.

    Article  Google Scholar 

  12. Svensson, E., Eisensmith, R. C., Dworniczak, B., et al. (1992) Two missense mutations causing mild hyperphenylalaninemia associated with DNA haplotype 12. Hum. Mutat. 1, 129–137.

    Article  PubMed  CAS  Google Scholar 

  13. Zschocke, J., Graham, C. A., Stewart, F. J., et al. (1994) Non-phenylketonuria hyperphenylalaninemia in northern Ireland: frequent mutation allows screening and early diagnosis. Hum. Mutat. 4, 114–118.

    Article  PubMed  CAS  Google Scholar 

  14. Devi, K. S., Devi, A. R., and Kondaiah, P. (1998) Amplification of phenylalanine hydroxylase and cystathionine β-synthetase transcripts in human peripheral lymphocytes by RT-PCR. Biochem. Mol. Biol. Int. 45, 643–650.

    PubMed  CAS  Google Scholar 

  15. Okano, Y., Hase, Y., Shintaku, H., et al. (1994) Molecular characterization of phenylketonuric mutations in Japanese by analysis of phenylalanine hydroxylase mRNA from lymphoblasts. Hum. Mol. Genet. 3, 659–660.

    Article  PubMed  CAS  Google Scholar 

  16. Ramus, S. J., Forrest, S. M., and Cotton, R. G. H. (1992) Illegitimate transcription of phenylalanine hydroxylase for detection of mutaions in patients with phenylketonuria. Hum. Mutat. 1, 154–158.

    Article  PubMed  CAS  Google Scholar 

  17. Takahashi, K., Kure, S., Matsubara, Y., and Narisawa, K. (1992) Novel phenylketonuria mutation detected by analysis of ectopically transcribed phenylalanine hydroxylase mRNA from lymphoblast (letter). Lancet 340, 1473.

    Article  PubMed  CAS  Google Scholar 

  18. Yoshimoto, M. (1995) Automated chemiluminescent DNA probe assay system. JJCLA 20, 728–731.

    Google Scholar 

  19. Dilella, A. G., Kwok, S. C. M., Ledley, F. D., et al. (1986) Molecular structure and polymorphic map of the human phenylalanine hydroxylase gene. Biochemistry 25, 743–749.

    Article  PubMed  CAS  Google Scholar 

  20. Dilella, A. G., Huang, W. M., and Woo, S. L. C. (1988) Screening for phenylketonuria mutations by DNA amplification with the polymerase chain reaction. Lancet 1, 497–499.

    Article  PubMed  CAS  Google Scholar 

  21. Okano, Y., Wang, T., Eisensmith, R. C., et al. (1990) Missense mutations associated with RFLP haplotypes 1 and 4 of the human phenylalanine hydroxylase gene. Am. J. Hum. Genet. 46, 18–25.

    PubMed  CAS  Google Scholar 

  22. Wang, T., Okano, Y., Eisensmith, R., et al. (1989) Molecular genetics of phenylketonuria in Orientals: Linkage disequilibrium between a termination mutation and haplotype 4 of the phenylalanine hydroxylase gene. Am. J. Hum. Genet. 45, 675–680.

    PubMed  CAS  Google Scholar 

  23. Zschocke, J. and Hoffmann, G.F. (1999) Phenylketonuria mutations in Germany. Hum. Genet. 104, 390–398.

    Article  PubMed  CAS  Google Scholar 

  24. Guldberg, P., Henriksen, K. F., and Guttler, F. (1993) Molecular analysis of phenylketonuria in Denmark: 99% of the mutations detected by denaturing gradient gel electrophoresis. Genomics 17, 141–146.

    Article  PubMed  CAS  Google Scholar 

  25. Perez, B., Desviat, L. R., and Ugarte, M. (1997) Analysis of the phenylalanine hydroxylase gene in the Spanish population: mutation profile and association with intragenic polymorphic makers. Am. J. Hum. Genet. 60, 95–102.

    PubMed  CAS  Google Scholar 

  26. Eiken, H.G., Knappskog, P.M., Motzfeld, K., et al. (1996) Phenylketonuria genotypes correlated to metabolic phenotype groups in Norway. Eur. J. Pediatr. 155, 554–560.

    Article  PubMed  CAS  Google Scholar 

  27. Okano, Y., Eisensmith, R.C., Guttler, F., et al. (1991) Molecular basis if phenotypic heterogeneity in phenylketonuria. N. Engl. J. Med. 324, 1232–1238.

    Article  PubMed  CAS  Google Scholar 

  28. Kayaalp, E., Treacy, E., Waters, P.J., et al. (1997) Human phenylalanine hydroxylase mutations and hyperphenylalaninemia phenotypes: a metanalysis of genotype phenotype correlations. Am. J. Hum. Genet. 61, 1309–1317.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Yutaka Takarada.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Takarada, Y., Kagawa, S., Okano, Y. et al. Rapid single-base mismatch detection in genotyping for phenylketonuria. Mol Biotechnol 24, 233–242 (2003). https://doi.org/10.1385/MB:24:3:233

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1385/MB:24:3:233

Index Entries

Navigation