Correction: Algorithms for Molecular Biology (2023) 18:15 https://doi.org/10.1186/s13015-023-00241-3
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Bonnet K, Marschall T, Doerr D. Constructing founder sets under allelic and non-allelic homologous recombination. Algorithms Mol Biol. 2023;18:15. https://doi.org/10.1186/s13015-023-00241-3.
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Additional file 1: Figure S1
. Reduction in the number of recombinations following minimization. The plots show the total number of recombinations before (blue dots) and after (red dots) minimization, as a function of each simulation parameter. Figure S2. Number of recombinations minimization benchmarks. Runtime (upper panels) and peak PSS (lower panels) as a function of the number of haplotypes (left) and the ratio of inverted duplications (right). Figure S3. Flow computation performance with a variable ratio of inversions. Runtime (left) and memory usage (right) as a function of this parameter. Figure S4. Visualization of a solution to the minimization problem on the 1p36.13 locus. The gray bars correspond to the graph’s nodes, labeled 1 to 8. The founder sequence (>1>2>3<7>5>2>3<4>5>5<6<4<3>7<3<2<4>5>6<5>4<5<4<3<2>7<3>6>7<3<4<3<2>6<4>3>2>7>8) is traced from top to bottom. A slanted line indicates the underlying node being traversed; if slanted rightwards, traversal is in forward direction, and if slanted leftwards, traversal is in reverse direction. Colors correspond to different haplotypes. The haplotype sequence is: EUR-HG00171-h2, AFR-NA19036-h1, SAS-GM20847-h2, AFR-HG03065-h2, AFR-NA19036-h1, AFR-NA19036-h1, AMR-HG01573-h2, AFR-HG02011-h2, AFR-HG03371-h2, SAS-HG03683-h2. Recombinations are marked with a star. Table S1. Sorted haplotype marker sequences used for analyzing the 1p36.13 locus.
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Bonnet, K., Marschall, T. & Doerr, D. Correction: Constructing founder sets under allelic and non-allelic homologous recombination. Algorithms Mol Biol 18, 20 (2023). https://doi.org/10.1186/s13015-023-00244-0
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DOI: https://doi.org/10.1186/s13015-023-00244-0