Schistosomiasis remains one of the most prevalent parasitic diseases in the world with more than 200 million individuals infected, of whom over half suffer from related morbidity [1]. Whilst the global burden of schistosomiasis has been estimated at 1.7 to 4.5 million disability-adjusted life years [2, 3], new research suggests this is a considerable underestimation of the ‘true’ burden of schistosomiasis [4, 5]. However, schistosomiasis is a so-called neglected tropical disease, because it primarily affects poor rural communities in developing countries [6, 7].

Sudan is one of the largest countries in Africa in terms of land surface area. The ongoing and protracted civil war, recurrent floods, droughts, storms, and the wide range of endemic, epidemic and epizoonotic diseases constitute important health and environmental threats [8]. Water ponds are the main characteristics of Southern Kordofan states where they stay wet for most of the year while open water sources constitute the main water source for households especially in rural areas. Generally speaking, the availability of latrines in the State is very low (less than 20 %) and the use of available latrines needs to be improved [9].

Early reports found that schistosomiasis is endemic in Sudan. However, few surveys have been conducted over the past 25 years because of the civil war [10]. Schistosomiasis has been identified as a real problem in the Southern Kordofan State. According to the National Schistosomiasis Control Program in Sudan [11], there are different treatment strategies including community mass treatment, selective treatment and case treatment. Due to the favorable disease ecology, we conducted this study to estimate the prevalence of schistosomiasis infection (both types) and identify associated risk factors among the adult population in Southern Kordofan to guide treatment strategies in the State.


Study area

Southern Kordofan state (11°8′N 29°53′E) lies to the south of Sudan country bordering South Sudan (Figure 1). It is bordered by five states, North Kordofan from the north, White Nile from the north east, Upper Nile from the south east, Unity state from the south, South Darfur from the west and Bahr El-Gazal from the south east. The total surface area of the state is 970,470 km2 and the population is about 1,066,171 people. South Kordofan is divided into 9 localities and 29 administrative units. Rainfall is around 300–450 ml during the long rainy season (5 months) and the climate is Savanna.

Figure 1
figure 1

The study area showing the location of the South Kordofan (dotted rectangular) among other Sudanese states and other endemic bordering countries.

The main activities of the communities in the state are farming and grazing. Water is provided mainly from dams, wells, Hafir (water collection behind a small wall erected by local community to collect rain water) and through water pumps. For more than 20 years, this state was the scene for war between north and southern Sudan that drastically affected the social and economic status of the State until now.

Study design

This was a cross-sectional study in which urine and stool samples were collected from the adult population and examined to estimate the prevalence of schistosomiasis in SK State. The study was conducted in South Kordofan State (SK) where all 9 localities in the state were included. These localities are: Kadugli, Dilling (Middle part), Lagawa, Elsalam, Abyei, Kailak (Weastern part), Abu Gebeiha, Rashad and Talodi localities (Eastern part). Nuba Mountain Areas (under SPLA control) agreed to be included as part of the previously mentioned localities. In each locality there were 3–7 Administrative Units. The total number of Administrative Units in SK State is 40. Within each Administrative Unit, there are a variable number of villages and towns.

In this survey, the family was the sampling unit. A family was defined as: “a group of family members including siblings of only one wife (oldest) - if there was more than one wife- who was residing in the same house and sharing food from the same kitchen during the last three months”. We used a multi-stage random sampling technique to select families for the survey. From each locality, two Administrative Units were randomly selected and from each Administrative Unit, 2 villages/towns were randomly selected for the study, which made the total number of villages/towns included as 36 villages/towns. Within each village/town, we used a systematic random sampling technique to select 10 families within houses for the survey. Accordingly, once selected, the whole family members above the age of 18 years were invited to participate in the study. After obtaining the consent, the head of the family was interviewed to complete the family questionnaire while all family members were asked to give at least 10 ml urine and a stool sample each.

Inclusion criterion for villages/towns was that the village/town should have at least 50 families living inside (around 300 population). Inclusion criterion for families was any family that resided in the selected house for the past 6 months, while we excluded any severely ill family member at the time of the survey

Sample size estimation

Sample size was estimated by using the WHO manual [12] for estimation of sample size for hypothesis testing for population proportion on the assumption that; a 5 % sampling error would be acceptable and 20 % schistosomiasis prevalence with a power at 90 %. This gave a sample size of 718 that was increased to 1826 to cater for design effect, nonresponse and missing data.

We conducted one-day training for the data collectors to ensure consistency of data collection. After submitting the consent, the family head was interviewed to fill in a structured pre-tested family questionnaire. From each recruited subject, at least 10 ml of urine and a stool sample were collected. Samples were stored on ice until transferred to the laboratory and then processed within the same day received. Two smears were prepared from each stool sample to test the presence of S. mansoni eggs using standard Kato Katz technique (WHO, 1994). The slides were read within 30 minutes of preparing them by a trained laboratory technician who was devoted to reading the slides. Urine was examined using the centrifugation method according to the Sudanese national standard.

Statistical analysis

It is stated clearly that data was entered on Access database. Then, the database was converted to Statistical package for social sciences (SPSS) V. 13.0 for statistical analysis. Based on the study multistage design of the survey; weighting, stratification, and clustering were taken into account in all statistical analyses using complex sample analysis in SPSS to estimate sampling errors of estimators based on sample designs. The procedures estimate the variance from the variation among the villages/towns and pool stratum variance estimates to compute the overall variance estimate. A weighting factor was used in the analysis to reflect the likelihood of sampling each family in a stratum. The weight used for estimation is given by the following formula: W = W1 x W2 x W3. Where W1 = the inverse of the probability of selecting the administrative unit in a strata, W2 = the inverse of the probability of selecting the village/town in a stratum and, W3 = the inverse of the probability of selecting a family from the villages/towns.

Quantitative variables such as age and density of S. haematobium infection were converted into categorical variables using suitable cut off points. The prevalence and 95 % confidence interval (95 % CI) of the S. haematobium infection were computed. Bivariate analysis for the relationship between the prevalence of S. haematobium infection and various risk factors that may be associated with infection was conducted using Pearson Chi square test. Pearson correlation coefficient was estimated for the correlation between ova density in urine and age. The recorded P value for the Chi Square test was used to build models for the multivariate analysis where only variables with p < 0.02 were included. Logistic regression model with backward elimination for variables that had association with S. haematobium at a significant level of p value <0.05 were retained in the model. Crude odds ratio (OR) with the 95 % CI were calculated and reported for the association between the prevalence of S. haematobium infection and risk factors.

Ethical clearance

This study was conducted using protocols and tools approved by the Sudanese Federal Ministry of Health. Ethical approval was obtained from the SK State Ministry of Health. Approvals of traditional community leaders were obtained before conducting the survey in any village/town. The whole adult family members were informed before starting the procedures of the survey and if agreed, they were recruited by signing/stamping the consent form.


In this survey, 1826 adults were recruited from all 9 localities in Southern Kordofan (SK) State. These subjects were recruited from 36 villages/towns in 18 administrative Units in the state.

All subjects submitted urine samples while only 72.0 % of adults submitted stool samples. Urine samples were examined for the presence of Schistosoma haematobium while stool samples were examined for the presence of Schistosoma mansoni infection.

Most of the adults recruited in the household survey were from rural areas (78.3 %). The mean age of recruited adults in the community survey was 33.5 ± 15.7 years. Subjects were mainly females (62.7 %) represented in the family as daughters (25.9 %) and mothers (17.1 %). Subjects were mostly illiterate (54.4 %) and the unemployed including housewives represented 48.4 % while the rest were mainly farmers (30.5 %) (Table 1).

Table 1 Some demographic characteristics of the adults recruited in the household survey, SK survey, Sudan, 2009

S. haematobium eggs were found in 6.9 % (95 % CI 5.7 – 8.1 %). The overall ova density among the infected population was 15.7 ± 12.6 (eggs/10 ml urine). Only 2/126 subjects had severe S. haematobium infection indicated by ova density ≥ 50 eggs/10 ml urine (Table 2). The prevalence of S. mansoni was 0.0 % among the studied population. The prevalence of soil transmitted helminths (STH) was also reported as high at 7.8 %, and two species were identified; Hymenolepis nana and Giardia lamblia.

Table 2 Schistosomiasis infection and soil-transmitted helminths among adults recruited in the household survey, SK survey, Sudan, 2009

Prevalence of S. haematobium among adults differed by geographic location at the locality, administrative unit and village/town levels where the variation became more noticeable moving from the locality to the village/town direction. Prevalence ranged from 0.0 % - 19.2 % among the 9 localities but the range was from 0.0 % - 24.0 % among the 18 administrative units and was from 0.0 % - 43.1 % among villages/towns. The prevalence in 18 out of 36 studied villages/towns was 0.0 %. Only 7 villages/towns had prevalence above 10 % while only 4 had prevalence above 20 %.

Infection was higher in rural areas (7.6 %) compared to urban areas (4.3 %). In addition, infection was much higher in the Western part of the State (12.5 %) compared to 3.3 % in the Eastern part and 0.0 % in the Middle part of the State (Table 3).

Table 3 General demographic characteristics and factors associated with

Multivariate analysis showed that living in the Western part carries almost 4 times the risk of infection compared to the Eastern part of the State (OR 3.83; 95 % CI 2.28-6.42) (Table 4).

Table 4 Bivariate and adjusted association of Schistosoma haematobium by risk factors among subjects recruited in the household survey, SK, Sudan 2009

S. haematobium infection was found to be the highest among mothers (10.9 %) and lowest among fathers (3.8 %) (p = 0.016). Similarly, prevalence was found to be significantly higher (p = 0.007) among females (8.1 %), compared to males (4.8 %). Prevalence of infection was similar among those aged ≤ 20 years compared to other age groups (p = 0.45). Illiteracy was associated with higher prevalence of infection (7.7 %) when compared to having received education above the primary level (2.5 %) (p = 0.014). Being a farmer was associated with higher prevalence of infection (9.7 %) compared to those who do not contact water as part of their routine work (3.1 %) (p < 0.001).

We could not estimate differences in infection associated with availability of latrines (p = 0.36). However, infection was significantly less among those who preferred using latrines – if available – (5.6 %) compared to those who preferred not (8.2 %) (p = 0.033).

The usage of open water sources (8.2 %) was weakly associated with infection (p = 0.06) compared to using pipe water or hand pumps (closed). Living within 1 km close to an open water source (7.8 %) was associated with higher infection (p < 0.001) compared to those who lived > 1 km away from an open water source (0.0 %). Using water from an open source for household affairs such as cleaning and for bathing/swimming was also associated with higher prevalence of infection (p < 0.001) (Table 3).

Presence of a health facility in the same location was associated with lower prevalence of infection (p < 0.01). Prevalence was 20.3 % among those who had a history of schistosomiasis treatment compared to only 6.4 % among those who had no previous history of treatment (p < 0.001) (Table 3).

Multivariate analysis showed significant association between S. haematobium infection and the following risk factors: not preferring latrine use – if available – was associated with more than 1.5 times greater risk for (OR 1.63; 95 % CI 1.11-2.41), use of open water source for household affairs such as cleaning carried 2 times the risk of infection (OR 2.10; 95 % CI 1.03-4.28) and lastly history of schistosomiasis treatment was associated with more than 4 times the risk compared to not having received treatment (OR 4.19; 95 % CI 2.10-8.37) (Table 4).

Only 15/126 (11.9 %) reported passing red urine, so self reporting of passing red urine was insensitive as a predictor of S. haematobium infection among the studied population. Self reporting of passing red urine showed much better specificity (95.9 %) compared to sensitivity. Sensitivity was better in males (33.3 %) compared to females (4.3 %).

The predictive value positive for reporting passing red urine was as low as 17.9 % among subjects. On the other hand, the negative predictive value was much better at 93.6 %. The overall accuracy of self reporting of passing red urine was 90.0 % among the studied population.


The aim of this study is to understand the prevalence of Schistosomiasis, and soil-transmitted helminths in a war affected area of Sudan. The infection of schistosomiasis, and soil-transmitted helminths (STH) has been a matter of great public health concern throughout Africa, and the world for decades [1315]. To our knowledge, this is the first State wide household survey for Schistosomiasis in Southern Kordofan State. The prevalence of S. haematobium infection was 6.9 % among adults recruited in this community survey. We found that S. mansoni infection does not exist among the adult population in SK State (prevalence was 0.0 %). The prevalence of S. haematobium varied greatly by locality. The Western part of the state had a significantly higher rate of infection compared to the Middle and Eastern parts. Among adults, S. haematobium infection was associated with refusing latrine use if available, use of open water sources for household purposes such as washing and lastly with a history of schistosomiasis treatment.

Previous old data reported that the prevalence of S. haematobium ranged from 0.4 - 44 % and S. mansoni 4.8 - 6.8 % in different parts of Southern Sudan [16]. In more recent studies, authors reported prevalence of S. haematobium and S. mansoni in White Nile State as 21.4 % and 10.1 % respectively [17]. In Southern Sudan, S. haematobium and S. mansoni was prevalent among 2.5 % & 1.9 % of population respectively [11].

The difference in prevalence rates among localities is similar to the findings in White Nile and many other studies inside and outside Sudan [17, 18]. Our estimation for the severity of infection in SK (0.2 %) is within the range mentioned by other studies [11].

The association between gender and S. haematobium infection varied in different communities. In our study, we could not estimate an association between infection and gender. Other studies in White Nile and in Southern Sudan also could not estimate such an association [11, 17].

A survey conducted at a large number of sites throughout Sudan in 1994 examined 2489 fecal samples and found 53 samples positive for STH. The conclusion of the FMoH is that the cumulative prevalence of infection with at least one STH ranged from 10-35 % with the majority of infection in Southern Sudan. In our study, the prevalence of STH was 7.8 %, which is close to the above-mentioned findings [19].

The prevalence of S. haematobium infection was not associated with age in SK, which was similar to the findings in the White Nile survey [17]. Similarly, we could not estimate association between education and occupation on the one hand and prevalence of S. haematobium infection on the other hand. This finding is similar to the finding reported in Malawi [18]. However; conflicting results have been reported from other studies for such relationships [20, 21]. These findings could be attributed to the fact that people in SK depend heavily on open water sources for different purposes with all populations similarly exposed.

Proximity of open water sources has been consistently reported as associated with S. haematobium infection in many studies [22, 23]. Interestingly, we could not estimate an association between home proximity to open water sources and S. haematobium infection, which is consistent with other studies [18]. Our finding can be explained by the fact that open water sources remain necessary for people to use regardless of the distance.

History of urinary schistosomiasis treatment was strongly associated with S. haematobium infection in SK, which is similar to other findings in Malawi [18]. This could be explained by the fact that communities with high prevalence rates tend to cluster around contaminated water sources with continuous exposure even after treatment [24].

The specificity of self reporting of passing red urine in our study was consistent with the specificity reported from other studies ranging from 58-96 % [25, 26]. However, the sensitivity we reported (11.9 %) was less than the average reported in the same previously mentioned studies (50-100 %). Possible reasons could be that students were afraid to be referred to hospital for expensive treatment if they reported passing red urine. These results could have been verified if we conducted Circulating Anodic Antigen (CAA) to compare it to self-reporting of passing red urine.


S. haematobium is a significant health problem affecting the health of the vulnerable population in Southern Kordofan State. Our study proved that S. mansoni does not exist among the different population groups. The use of a questionnaire as a screening tool for S. haematobium infection is not valuable due to its low sensitivity compared to urine examination for S. haematobium eggs, which will remain the gold standard test for diagnosing the infection.

Based on the findings of this survey, the Schistosomiasis Control Program in SK State within the SMoH shall direct resources to combat schistosomiasis with all focus on S. haematobium. This study illustrates the national efforts to better control schistosomiasis activities by fostering the Schistosomiasis Control Programs at the State level in Sudan. The SMoH shall consider targeted/selective treatment in villages/towns in SK based on prevalence estimates (National Schistosomiasis Control Program, 2006). Repetition of this survey in SK State is recommended to update the treatment policy of the SMoH. Similar State-wide surveys targeting younger and school children are also recommended to guide treatment for other population groups as well. In addition, studies on different treatment schemes that may guide better policies to ensure timely and better utilization of praziquantel is recommended.