Abstract.
Neutron scattering techniques have been employed to investigate 1,2-dimyristoyl-sn -glycero-3-phosphocholine (DMPC) membranes in the form of multilamellar vesicles (MLVs) and deposited, stacked multilamellar-bilayers (MLBs), covering transitions from the gel to the liquid phase. Neutron diffraction was used to characterise the samples in terms of transition temperatures, whereas elastic incoherent neutron scattering (EINS) demonstrates that the dynamics on the sub-macromolecular length-scale and pico- to nano-second time-scale are correlated with the structural transitions through a discontinuity in the observed elastic intensities and the derived mean square displacements. Molecular dynamics simulations have been performed in parallel focussing on the length-, time- and temperature-scales of the neutron experiments. They correctly reproduce the structural features of the main gel-liquid phase transition. Particular emphasis is placed on the dynamical amplitudes derived from experiment and simulations. Two methods are used to analyse the experimental data and mean square displacements. They agree within a factor of 2 irrespective of the probed time-scale, i.e. the instrument utilized. Mean square displacements computed from simulations show a comparable level of agreement with the experimental values, albeit, the best match with the two methods varies for the two instruments. Consequently, experiments and simulations together give a consistent picture of the structural and dynamical aspects of the main lipid transition and provide a basis for future, theoretical modelling of dynamics and phase behaviour in membranes. The need for more detailed analytical models is pointed out by the remaining variation of the dynamical amplitudes derived in two different ways from experiments on the one hand and simulations on the other.
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References
O. Mouritsen, Life as a Matter of Fat (Springer, 2005)
W.F.D. Bennett, D.P. Tieleman, Biochim. Biophys. Acta 1828, 1765 (2013) and references therein
D.P. Tieleman, S.J. Marrink, H.J.C. Berendsen, Biochim. Biophys. Acta 1331, 235 (1997) and references therein
O.G. Mouritsen, K. Jorgensen, Curr. Opin. Struct. Biol. 7, 518 (1997)
J.S. Hub, T. Salditt, M.C. Rheinstädter, B.L. de Groot, Biophys. J. 93, 3156 (2007)
C.F. Majkrzak, N.F. Berk, S. Krueger, J.A. Dura, M. Tarek, D. Tobias, V. Silin, C.W. Meuse, J. Woodward, A.L. Plant, Biophys. J. 79, 3330 (2000)
M. Tarek, D.J. Tobias, S.-H. Chen, M.L. Klein, Phys. Rev. Lett. 87, 238101 (2001)
T. Heimburg, Biophys. J. 78, 1154 (2000)
J.R. Trudell, D.G. Payan, J.H. Chin, E.N. Cohen, Proc. Nat. Acad. Sci. U.S.A. 72, 210 (1975)
A. Macdonald, Biochim. Biophys. Acta 507, 26 (1978)
J. Nagle, D. Wilkinson, Biophys. J. 23, 159 (1978)
P. Brocca, L. Cantu, M. Corti, E. Del Favero, S. Motta, M.C. Nodari, Colloids Surf. A. 291, 63 (2006)
H. Ichimori, T. Hata, H. Matsuki, S. Kaneshina, Biochim. Biophys. Acta 1414, 165 (1998)
S. Krishna Prasad, R. Shashidhar, B. Gaber, S. Chandrasekhar, Chem. Phys. Lipids 43, 227 (1987)
H.H. Mantsch, R.N. McElhaney, Chem. Phys. Lipids 57, 213 (1991)
R. Winter, W. Dzwolak Philos. Trans. Royal Soc. A: Math. Phys. Engin. Sci. 3635372005
R. Winter, C. Jeworrek, Soft Matter 5, 3157 (2009)
C. Sennoga, A. Heron, J.M. Seddon, R.H. Templer, B. Hankamer, Acta Crystallogr. D 59, 239 (2003)
T. Salditt, C. Münster, U. Mennicke, C. Ollinger, G. Fragneto, Langmuir 19, 7703 (2003)
H.P. Wacklin, Curr. Opin. Colloid Interface Sci. 15, 445 (2010)
E. Dufourc, NMR of Lipids, Wiley Encyclopedia of Chemical Biology (John Wiley & Son, 2008)
J. Phillips et al., J. Comput. Chem. 26, 1781 (2005)
J.B. Klauda et al., J. Phys. Chem. B 114, 7830 (2010)
L. Rusevich et al., Eur. Phys. J. E 36, 80 (2013)
N. Kucerka, Y. Liu, N. Chu, H.I. Petrache, S. Tristram-Nagle, J.F. Nagle, Biophys. J. 88, 2626 (2005)
C.L. Armstrong, M.A. Barrett, L. Toppozini, N. Kucerka, Z. Yamani, J. Katsaras, G. Fragneto, M.C. Rheinstädter, Soft Matter 8, 4687 (2012)
A. Blume, Biochemistry 22, 5436 (1983)
S. Leekumjorn, A.K. Sum, Biochim. Biophys. Acta 1768, 354 (2007)
R. Koynova, B.G. Tenchov, S. Todinova, P.J. Quinn, Biophys. J. 68, 2370 (1995)
H.H. Chang, R.K. Bhagat, R. Tran, P. Dea, J. Phys. Chem. B 110, 22192 (2006)
M. Trapp, T. Gutberlet, F. Juranyi, T. Unruh, B. Demé, M. Tehei, J. Peters, J. Chem. Phys. 133, 164505 (2010)
W. Pfeiffer, T. Henkel, E. Sackmann, W. Knoll, D. Richter, Europhys. Lett. 8, 201 (1989)
S. König, W. Pfeiffer, T. Bayerl, D. Richter, E. Sackmann, J. Phys. II 2, 1589 (1992)
S. König, E. Sackmann, D. Richter, R. Zorn, C. Carlile, T.M. Bayerl, J. Chem. Phys. 100, 3307 (1994)
E. Falck, T. Rog, M. Karttunen, I. Vattulainen, J. Am. Chem. Soc. 130, 44 (2008)
S. Busch, C. Smuda, L.C. Pardo, T. Unruh, J. Am. Chem. Soc. 132, 3232 (2010)
G.R. Kneller, K. Baczynski, M. Pasenkiewicz-Gierula, J. Chem. Phys. 135, 141105 (2011)
C.L. Armstrong, M. Trapp, J. Peters, T. Seydel, M.C. Rheinstädter, Soft Matter 7, 8358 (2011)
S. Tristram-Nagle, Y. Liu, J. Legleiter, John F. Nagle, Biophys. J. 83, 3324 (2002)
http://www.ill.eu/instruments-support/instruments-groups/instruments/d16/characteristics/
M.J. Janiak, D.M. Small, G.G. Shipley, J. Biol. Chem. 254, 6068 (1979)
F. Natali, J. Peters, D. Russo, S. Barbieri, C. Chiapponi, A. Cupane, A. Deriu, M.T. Di Bari, E. Farhi, Y. Gerelli, P. Mariani, A. Paciaroni, C. Rivessau, G. Schiro’, F. Sonvico, Neutron News 19, 14 (2008)
A. Rahman, K.S. Singwi, A. Sjölander, Phys. Rev. 126, 986 (1962)
M. Tehei, R. Daniel, G. Zaccai, Eur. Biophys. J. 35, 551 (2006)
F. Natali, C. Castellano, D. Pozzi, A. Congiu Castellano, Biophys. J. 88, 1081 (2005)
J. Peters, G.R. Kneller, J. Chem. Phys. 139, 165102 (2013)
R.W. Pastor, R.M. Venable, S.E. Feller, Acc. Chem. Res. 35, 438 (2002)
C.-J. Högberg, A.P. Lyubartsev, J. Phys. Chem. B. 110, 14326 (2006)
U. Essmann et al., J. Chem. Phys. 103, 8577 (1995)
H. Pfeiffer, H. Binder, G. Klose, K. Heremans, Biochim. Biophys. Acta 1609, 148 (2003)
M. Trapp, F. Juranyi, M. Tehei, L. van Eijck, B. Demé, T. Gutberlet, J. Peters, Spectroscopy 24, 461 (2010)
G.S. Smith, E.B. Sirota, C.R. Safinya, N.A. Clark, Phys. Rev. Lett. 60, 813 (1988)
A.V. Popova, D.K. Hincha, BMC Biophys. 4, 11 (2011)
A.M. Stadler, E. Pellegrini, M. Johnson, J. Fitter, G. Zaccai, Biophys. J. 102, 351 (2012)
F. Natali, A. Relini, A. Gliozzi, R. Rolandi, P. Cavatorta, A. Deriu, A. Fasano, P. Riccio, Chem. Phys. 292, 455 (2003)
Z. Yi, Y. Miao, J. Baudry, N. Jain, J.C. Smith, J. Phys. Chem. B 116, 5028 (2012)
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Aoun, B., Pellegrini, E., Trapp, M. et al. Direct comparison of elastic incoherent neutron scattering experiments with molecular dynamics simulations of DMPC phase transitions. Eur. Phys. J. E 39, 48 (2016). https://doi.org/10.1140/epje/i2016-16048-y
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DOI: https://doi.org/10.1140/epje/i2016-16048-y