Skip to main content

Advertisement

Log in

Tracking the heterogeneous distribution of amyloid spherulites and their population balance with free fibrils

  • Regular Article
  • Published:
The European Physical Journal E Aims and scope Submit manuscript

Abstract.

The analysis of amyloidogenic systems reveals the appearance of distinct states of aggregation for amyloid fibrils. For different proteins and under specific experimental conditions, amyloid spherulites are recognized as a significant component occurring in several protein model systems used for in vitro fibrillation studies. In this work we have developed an approach to characterize solutions containing a mixture of amyloid spherulites and individual fibrils. Using bovine insulin as the model system, sedimentation kinetics for the amyloid aggregates were followed using a combination of UV-Vis spectroscopy and cross-polarized optical microscopy. Spherulites were identified as the species undergoing sedimentation. A simple mathematical approach allows the description of the kinetics in terms of decay time/rate distribution. Moreover, based on the sedimentation kinetics, a rough estimate of the balance between amyloid spherulites and individual fibrils can be provided. Fitting the experimental data with the proposed physico-chemical approach shows self-consistent results in reasonable agreement with quantitative imaging analysis previously reported. Our results provide new physical insights into the analysis of amyloidogenic systems, providing a method to characterize the heterogeneous distribution of amyloid spherulites and simultaneously distinguish spherulites and free fibril populations. Importantly, the method can be generally applied to the characterization of polydisperse solutions containing optically traceable spherical particles in the micrometric range.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. F. Chiti, P. Webster, N. Taddei, A. Clark, M. Stefani, G. Ramponi, C.M. Dobson, Proc. Natl. Acad. Sci. U.S.A. 96, 3590 (1999)

    Article  ADS  Google Scholar 

  2. M. Vendruscolo, J. Zurdo, C.E. McPhee, C.M. Dobson, Phil. Trans. R. Soc. London, Ser. A 361, 1205 (2003)

    Article  ADS  Google Scholar 

  3. C.M. Dobson, Semin. Cell Dev. Biol. 15, 3 (2004)

    Article  Google Scholar 

  4. M. Stefani, Biochim. Biophys. Acta 1739, 5 (2004)

    Google Scholar 

  5. V.N. Uversky, A.L. Fink, Biochim. Biophys. Acta 1698, 131 (2004)

    Google Scholar 

  6. J. Brange, Physical stability of proteins, in Pharmaceutical Formulation Development of Peptides and Proteins, edited by S. Frokjaer, L. Hovgaard (Taylor Francis, London, 2000)

  7. M.R. Nilsson, Methods 34, 151 (2004)

    Article  Google Scholar 

  8. V. Militello, V. Vetri, M. Leone, Biophys. Chem. 105, 133 (2003)

    Article  Google Scholar 

  9. V. Militello, C. Casarino, A. Emanuele, A. Giostra, F. Pullara, M. Leone, Biophys. Chem. 107, 175 (2004)

    Article  Google Scholar 

  10. V. Vetri, V. Militello, Biophys. Chem. 113, 83 (2005)

    Article  Google Scholar 

  11. V. Vetri, C. Canale, A. Relini, F. Librizzi, V. Militello, A. Gliozzi, M. Leone, Biophys. Chem. 125, 184 (2007)

    Article  Google Scholar 

  12. F. Oosawa, S. Asakura, Thermodynamics of the Polymerization of Proteins (Academic Press, New York, 1975)

  13. F. Ferrone, Methods Enzymol. 309, 256 (1999)

    Article  Google Scholar 

  14. S.B. Padrick, A.D. Miranker, Biochemistry 41, 4694 (2002)

    Article  Google Scholar 

  15. W.F. Xue, S.W. Homans, S.E. Radford, Proc. Natl. Acad. Sci. U.S.A. 105, 8926 (2008)

    Article  ADS  Google Scholar 

  16. A. Loksztejn, W. Dzwolak, Biochemistry 48, 4846 (2009)

    Article  Google Scholar 

  17. M. Fändrich, J. Meinhardt, N. Grigorieff, Prion 3, 89 (2009)

    Article  Google Scholar 

  18. J. Meinhardt, C. Sachse, P. Hortschansky, N. Grigorieff, M. Fändrich, J. Mol. Biol. 386, 869 (2009)

    Article  Google Scholar 

  19. A.T. Petkova, R.D. Leapman, Z. Guo, W.M. Yau, M.P. Mattsona, R. Tycko, Science 307, 262 (2005)

    Article  ADS  Google Scholar 

  20. J.L. Jiménez, G. Tennent, M. Pepys, H.R. Saibil, J. Mol. Biol. 311, 241 (2001)

    Article  Google Scholar 

  21. R.A. Crowther, M. Goedert, J. Struct. Biol. 130, 271 (2000)

    Article  Google Scholar 

  22. B. Seilheimer, B. Bohrmann, L. Bondolfi, F. Müller, D. Stüber, H. Döbeli, J. Struct. Biol. 119, 59 (1997)

    Article  Google Scholar 

  23. M. Manno, E.F. Craparo, A. Podestà, D. Bulone, R. Carrotta, V. Martorana, G. Tiana, P.L. San Biagio, J. Mol. Biol. 366, 258 (2007)

    Article  Google Scholar 

  24. V. Foderà, M. van deWeert, B. Vestergaard, Soft Matter 6, 4413 (2010)

    Article  Google Scholar 

  25. M.R. Krebs, C.E. Macphee, A.F. Miller, I.E. Dunlop, C.M. Dobson, A.M. Donald, Proc. Natl. Acad. Sci. U.S.A. 101, 14420 (2004)

    Article  ADS  Google Scholar 

  26. S.G. Bolder, H. Hendrick, L.M.C. Sagis, E. van der Linden, J. Agric. Food Chem. 54, 4229 (2006)

    Article  Google Scholar 

  27. S.S. Rogers, M.R.H. Krebs, E.H.C. Bromley, E. van der Linden, A.M. Donald, Biophys. J. 90, 1043 (2006)

    Article  Google Scholar 

  28. M.R. Krebs, E.H. Bromley, S.S. Rogers, A.M. Donald, Biophys J. 88, 2013 (2005)

    Article  Google Scholar 

  29. C. Exley, E. House, J.F. Collingwood, M.R. Davidson, D. Cannon, A.M. Donald, J. Alzheimers Dis. 20, 1159 (2010)

    Google Scholar 

  30. J. Juárez, P. Taboada, S. Goy-López, A. Cambón, M.B. Madec, S.G. Yeates, V. Mosquera, J. Phys. Chem. B 113, 12391 (2009)

    Article  Google Scholar 

  31. K.R. Domike, A.M. Donald, Biomacromolecules 8, 3930 (2007)

    Article  Google Scholar 

  32. Y.F. Mok, G.J. Howlett, Meth. Enzymol. 413, 199 (2006)

    Article  Google Scholar 

  33. V. Foderà, S. Cataldo, F. Librizzi, B. Pignataro, P. Spiccia, M. Leone, J. Phys. Chem. B 113, 10830 (2009)

    Article  Google Scholar 

  34. V. Foderà, M. Groenning, V. Vetri, F. Librizzi, S. Spagnolo, C. Cornett, L. Olsen, M. van de Weert, M. Leone, J. Phys. Chem. B 112, 15174 (2008)

    Article  Google Scholar 

  35. R.R. Porter, Biochem. J. 53, 320 (1953)

    Google Scholar 

  36. M. Groenning, L. Olsen, M. van de Weert, J.M. Flink, S. Frokjaer, F.S. Jorgensen, J. Struct. Biol. 158, 358 (2007)

    Article  Google Scholar 

  37. C.P. Jaroniec, C.E. MacPhee, N.S. Astrof, C.M. Dobson, R.G. Griffin, Proc. Natl. Acad. Sci. U.S.A. 99, 16748 (2002)

    Article  ADS  Google Scholar 

  38. M.R. Krebs, E.H. Bromley, A.M. Donald, J. Struct. Biol. 149, 30 (2005)

    Article  Google Scholar 

  39. R. Jansen, W. Dzwolak, R. Winter, Biophys J. 88, 1344 (2005)

    Article  Google Scholar 

  40. A. Ahmad, V.N. Uversky, D. Hong, A.L. Fink, J. Biol. Chem. 280, 42669 (2005)

    Article  Google Scholar 

  41. S. Grudzielanek, V. Smirnovas, R. Winter, J. Mol. Biol. 356, 497 (2006)

    Article  Google Scholar 

  42. L.L. Minkov, E.V. Pikushchak, J.G. Dueck, Thermophys. Aeromech. 6, 77 (2009)

    ADS  Google Scholar 

  43. M.N. Berberan-Santos, E.N. Bodunov, B. Valeur, Chem. Phys. 317, 57 (2005)

    Article  ADS  Google Scholar 

  44. M.N. Berberan-Santos, Chem. Phys. Lett. 460, 146 (2008)

    Article  ADS  Google Scholar 

  45. L. Whitehead, R. Whitehead, Am. J. Phys. 77, 173 (2009)

    Article  ADS  Google Scholar 

  46. D. Cannon, A.M. Donald, in preparation

  47. V. Foderà, F. Librizzi, M. Groenning, M. van de Weert, M. Leone, J. Phys. Chem. B 112, 3853 (2008)

    Article  Google Scholar 

  48. J. Hofrichter, J. Mol. Biol. 189, 553 (1986)

    Article  Google Scholar 

  49. P. Hammarstrom, X. Jiang, S. Deechongkit, J.W. Kelly, Biochemistry 40, 11453 (2001)

    Article  Google Scholar 

  50. H.A. Lashuel, Z. Lai, J.W. Kelly, Biochemistry 37, 17851 (1998)

    Article  Google Scholar 

  51. H.A. Lashuel, D.M. Hartley, D. Balakhaneh, A. Aggarwal, S. Teichberg, D.J. Callaway, J. Biol. Chem. 277, 42881 (2002)

    Article  Google Scholar 

  52. E. Acebo, M. Mayorga, J.F. Val-Bernal, For. Pathol. 31, 8 (1999)

    Article  Google Scholar 

  53. M.D. Griffin, M.L. Mok, L.M. Wilson, C.L. Pham, L.J. Waddington, M.A. Perugini, G.J. Howlett, J. Mol. Biol. 375, 240 (2008)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Foderà, V., Donald, A.M. Tracking the heterogeneous distribution of amyloid spherulites and their population balance with free fibrils. Eur. Phys. J. E 33, 273–282 (2010). https://doi.org/10.1140/epje/i2010-10665-4

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1140/epje/i2010-10665-4

Keywords

Navigation