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Problem of proteolytic enzyme evolution

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Abstract

Own and literature data on putative evolution of proteolytic enzymes have been reviewed. Modern principles of peptidase classification based on evaluation of homology of more than 66 thousand gene sequences and similarity of general structural organization of almost 2.5 thousands of known enzymes are considered. The review highlights not only evolutionary interrelationships inside related peptidase families, their possible evolutionary background, but also evolutionary determined differences in certain proteolytic pathway in organisms belonging to different taxons.

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References

  1. Mosolov, V.V., Proteoliticheskie fermenty (Proteolytic Enzymes), Moscow: Nauka 1971.

    Google Scholar 

  2. Mosolov, V.V., Usp. Biol. Khim., 1988, vol. 28, pp. 125–144.

    Google Scholar 

  3. Antonov, V.K., Khimiya proteoliza (Chemistry of Proteolysis), Moscow: Mir, 1983.

    Google Scholar 

  4. Din, R., Protsessy raspada v kletke (Decomposition Processes in the Cell), Moscow: Mir, 1981.

    Google Scholar 

  5. Bohley P., in: Hydrolytic Enzymes, Neuberger A. and Brocklehurst K., Eds., Elsevier Science Publishers B.V. (Biomedical Division), 1987, pp. 307–332.

  6. Lokshina, L.A., Mol. Biol., 1979, vol. 13, pp. 1205–1229.

    CAS  Google Scholar 

  7. Epel’, D., Ontogenez, 1992, vol. 23(3), pp. 213–227.

    Google Scholar 

  8. Volkova, T.O. and Nemova, N.N., Molekulyarnye mekhanizmy apoptoza leikoznoi kletki (Molecular Mechanisms of Apoptosis in the Cell), Moscow: Nauka, 2005.

    Google Scholar 

  9. Bondareva, L.A., Nemova, N.N., and Kyaivyaryainen, E.I., Vnutrikletochnaya Ca 2+-zavisimaya proteoliticheskaya sistema zhivotnykh (Intracellular Ca2+-Dependent Proteolytic System in Animals), Moscow: Nauka, 2006.

    Google Scholar 

  10. Mayer, R.J., Arnold, J., Laszlo, L., Landon, M., and Lowe, J., Biochim. Biophys. Acta, 1991, vol. 1089(2), pp. 141–157.

    CAS  Google Scholar 

  11. Goll, D.E., Thompson, V.F., Li, H., Wei, W., and Cong, J., Physiol. Rev., 2003, vol. 83(3), pp. 731–801.

    CAS  Google Scholar 

  12. Rawlings, N.D., Morton, F.R., and Barrett, A.J., Nucleic Acids Res., 2006, vol. 34, pp. D270–D272.

    Article  CAS  Google Scholar 

  13. Rawlings, N.D., O’Brien, E., and Barrett, A.J., Nucleic Acids Res., 2002, vol. 30(1), pp. 343–346.

    Article  CAS  Google Scholar 

  14. Richard, I., J. Med. Genetics, 2005, vol. 42, pp. 529–539.

    Article  CAS  Google Scholar 

  15. Rawlings, N.D. and Barrett, A.J., Biochem. J., 1993, vol. 290(1), pp. 205–218.

    CAS  Google Scholar 

  16. Tang, J. and Wong, R.N.S., J. Cell. Biochem., 1987, vol. 33(1), pp. 53–66.

    Article  CAS  Google Scholar 

  17. Panthier, J.J., Foote, S., Chambraud, B., Strosberg, A.D., Corvol, P., and Rougeon, F., Nature, 1982, vol. 298(5869), pp. 90–92.

    Article  CAS  Google Scholar 

  18. Fujinaga, M., Cherney, M.M., Oyama, H., Oda, K., and James, M.N.G., Proc. Natl. Acad. Sci. USA, 2004, vol. 101(10), pp. 3364–3369.

    Article  CAS  Google Scholar 

  19. Massova, I., Kotra, L.P., Fridman, R., and Mobashery, S., FASEB J., 1998, vol. 12, pp. 1075–1095.

    CAS  Google Scholar 

  20. Harrison, M., Abu-Elmagd, M., Grocott, T., Yates, C., Gavrilovic, J., and Wheeler, G.N., Dev. Dyn., 2004, vol. 232(1), pp. 200–214.

    Google Scholar 

  21. Somerville, R.P.T., Oblander, A., and Apte, S.S., Gen. Biol., 2003, vol. 4(6), pp. 216–221.

    Article  Google Scholar 

  22. Tang, B.L., Int. J. Biochem. Cell. Biol., 2001, vol. 33(1), pp. 33–44.

    Article  CAS  Google Scholar 

  23. Apte, S.S., Int. J. Biochem. Cell. Biol., 2004, vol. 36, pp. 981–985.

    Article  CAS  Google Scholar 

  24. Nicholson, A.C., Malik, S.B., Logsdon, J.M., Jr., and Van Meir, E.G., BMC Evol. Biol., 2005, vol. 5(1), p. 11.

    Article  Google Scholar 

  25. Abrahamson, M., Alvarez-Fernandez, M., and Nathanson, C.-M., Biochem. Soc. Symp., 2003, vol. 70, pp. 179–199.

    CAS  Google Scholar 

  26. Silverman, G.A., Whisstock, J.C., Askew, D.J., Pak, S.C., Luke, C.J., Cataltepe, S., Irving, J.A., and Bird, P.I., Cell. Mol. Life Sci., 2004, vol. 61(3), pp. 301–325.

    Article  CAS  Google Scholar 

  27. Hershko, A. and Ciechanover, A., Annu. Rev. Biochem., 1998, vol. 67, pp. 425–479.

    Article  CAS  Google Scholar 

  28. Lupas, A., Zuhl, F., Tamura, T., Wolf, S., Nagy, I., DeMot, R., and Baumeister, W., Mol. Biol. Reports, 1997, vol. 24, pp. 125–131.

    Article  CAS  Google Scholar 

  29. Mukhin, V.A., Proteoliticheskie fermenty v tkanyakh nekotorykh morskikh bespozvonochnykh, Cand. Sci. Dissertation, Moscow: Bakh Institute of Biochemistry, 1998.

    Google Scholar 

  30. Bondareva, L.A., Vliyanie nekotorykh faktorov na vnutrikletochnyi proteoliz u gidrobiotonov, Cad. Sci. Dissertation, Karelial State Pedagogical University, Petrozavodsk, 2004.

    Google Scholar 

  31. Hamazaki, H., FEBS Lett., 1996, vol. 396, pp. 139–142.

    Article  CAS  Google Scholar 

  32. Nemova, N.N., Vnutrikletochnye proteoliticheskie fermenty ryb (Intracellular Proteolytic Enzymes in Fishes), Petrozavodsk: Izd-vo KarNTs RAS, 1996.

    Google Scholar 

  33. Nemova, N.N. and Bondareva, L.A., Proteoliticheskie fermenty: Uchebnoe posobie (Proteolytic Enzymes: A Textbook), Petrozavodsk: Izd-vo KarNTs RNA, 2004.

    Google Scholar 

  34. Korolenko, T.A., Zhanaeva, S.Ya., Poteryaeva, O.N., Svechnikova, I.G., Falameeva, O.V., Khalikova, T.A., Yarygina, E.S., and Goncharova, I.A., Byull. SO RAMN, 2004, vol. 2, pp. 130–134.

    Google Scholar 

  35. Barrett, A.J., Proteinases in Mammalian Cells and Tissues, Amsterdam, North Holland, 1977.

    Google Scholar 

  36. Mort, J.S. and Buttle, D.J., Int. J. Biochem. Cell. Biol., 1997, vol. 29(5), pp. 715–720.

    Article  CAS  Google Scholar 

  37. Song, J., Xu, P., Xiang, H., Su, Z., Storer, A.C., and Ni, F., FEBS Lett., 2000, vol. 475, pp. 157–162.

    Article  CAS  Google Scholar 

  38. Chagas, J.R., Di Martino, M.F., Gauthier, F., and Lalmanach, G., FEBS Lett., 1996, vol. 392, pp. 233–236.

    Article  CAS  Google Scholar 

  39. Illy, C., Quaraishi, O., Wang, J., Purisima, E., Vernet, T., and Mort, J.S., J. Biol. Chem., 1997, vol. 272(2), pp. 1197–1202.

    Article  CAS  Google Scholar 

  40. Tutel’yan, V.A. and Vasil’ev, S.V., Zh. Evol. Biokhim. Fiziol., 1982, vol. 18(2), pp. 113–118.

    CAS  Google Scholar 

  41. Jékely, G. and Friedrich, P., J. Mol. Evol., 1999, vol. 49(2), pp. 272–281.

    Article  Google Scholar 

  42. Suzuki, K., Hata, S., Kawabata, Y., and Sorimachi, H., Diabetes, 2004, vol. 53(1), pp. S12–S18.

    Article  CAS  Google Scholar 

  43. Strobl, S., Fernandez-Catalan, C., Braun, M., Huber, R., Masumoto, H., Nakagawa, K., Irie, A., Sorimachi, H., Bourenkow, G., Bartunik, H., Suzuki, K., and Bode, W., Proc. Natl. Acad. Sci. USA, 2000, vol. 97, pp. 588–592.

    Article  CAS  Google Scholar 

  44. Nemova, N.N., Kaivarainen, E.I., and Bondareva, L.A., Vestn. Mosk. Univ. Khimiya, 2000, vol. 41(6), pp. 106–108.

    Google Scholar 

  45. Sorimachi, H. and Suzuki, K., J. Biochem., 2001, vol. 129, pp. 653–664.

    CAS  Google Scholar 

  46. Croall, D.E. and Ersfeld, K., Genome Biol., 2007, vol. 8(6), p. 218.

    Article  Google Scholar 

  47. Hata, S., Nishi, K., Kawamoto, T., Lee, H.-J., Kawahara, H., Maeda, T., Shintani, Y., Sorimachi, H., and Suzuki, K., J. Mol. Evol., 2001, vol. 53, pp. 191–203.

    Article  CAS  Google Scholar 

  48. Bondareva, L.A. and Nemova, N.N., Bioorg. Khim. (in press), 2007.

  49. Hughes, A.L., Proc. Natl. Acad. Sci. USA, 2005, vol. 102(25), pp. 8791–8792.

    Article  CAS  Google Scholar 

  50. Parr, T., Sensky, P.L., Bardsley, R.G., and Buttery, P.J., Arch. Biochem. Biophys., 2001, vol. 395, pp. 1–13.

    Article  CAS  Google Scholar 

  51. Abramova, E.B., Sharova, N.P., and Karpov, V.L., Mol. Biol., 2002, vol. 36(5), pp. 761–776.

    Article  CAS  Google Scholar 

  52. Sharova, N.P., Astakhova, T.M., Bondareva, L.A., Dmitrieva, S.B., and Erokhov, P.A., Biochemistry (Moscow), 2006, vol. 71(9) pp. 1278–1286.

    Article  Google Scholar 

  53. Coux, O., Tanaka, K., and Goldberg, A.L., Annu. Rev. Biochem., 1996, vol. 65, pp. 801–847.

    Article  CAS  Google Scholar 

  54. DeMartino, G.N., and Slaughter, C.A., J. Biol. Chem., 1999, vol. 274(32), pp. 22123–22126.

    Article  CAS  Google Scholar 

  55. Keller, J.N., Hanni, K.B., and Markesbery, W.R., Mech. Ageing Dev., 2000, vol. 113, pp. 61–70.

    Article  CAS  Google Scholar 

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Authors and Affiliations

  1. Institute of Biology, Karelian Research Center, Russian Academy of Sciences, ul. Pushkinskaya 11, Petrozavodsk, 185910, Russia

    N. N. Nemova & L. A. Bondareva

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  1. N. N. Nemova
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  2. L. A. Bondareva
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Correspondence to N. N. Nemova.

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Original Russian Text © N.N. Nemova, L.A. Bondareva, 2008, published in Biomeditsinskaya Khimiya.

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Nemova, N.N., Bondareva, L.A. Problem of proteolytic enzyme evolution. Biochem. Moscow Suppl. Ser. B 2, 115–125 (2008). https://doi.org/10.1134/S1990750808020017

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