Abstract
Expansion microscopy (ExM) is a sample preparation technique which allows to achieve improved visualization of biological structures based on the physical expansion of the sample. This method is used in combination with traditional light microscopy and allows to achieve visualization of biological structures with higher resolution, without the use of complex technical devices typical for super-resolution microscopy. Unlike the methods of super-resolution microscopy, expansion microscopy does not make it possible to overcome the diffraction limit; however, the observed effect can be considered equal to an increase in the spatial resolution. The relative simplicity of the method and low requirements for the microscope used, have made expansion microscopy a fairly popular method to visualize various biological structures recently. This paper describes the use of expansion microscopy to visualize DNA and structures formed by the FtsZ protein in Escherichia coli cells during the SOS response. The results of the work confirm the previously obtained data that the FtsZ protein in cells in the state of the SOS response is unevenly distributed. The protocol used in this work for visualization of E. coli cells using the expansion microscopy method can be used in the future to study the internal structures of other cells, both bacterial and eukaryotic.
Similar content being viewed by others
REFERENCES
Asano, S.M., Gao, R., Wassie, A.T., Tillberg, P.W., Chen, F., and Boyden, E.S., Expansion microscopy: protocols for imaging proteins and RNA in cells and tissues, Curr. Prot. Cell Biol., 2018, vol. 80, p. e56. https://doi.org/10.1002/cpcb.56
Chang, J.-B., Chen, F., Yoon, Y.-G., Jung, E.E., Babcock, H., Kang, J.S., Asano, S., Suk, H.-J., Pak, N., Tillberg, P.W., Wassie, A.T., Cai, D., and Boyden, E.S., Iterative expansion microscopy, Nat. Methods, 2017, vol. 14, p. 593.
Chen, Y., Milam, S.L., and Erickson, H.P., SulA inhibits assembly of FtsZ by a simple sequestration mechanism, Biochemistry, 2012, vol. 51, p. 3100.
Chen, F., Tillberg, P.W., and Boyden, E.S., Expansion microscopy, Science, 2015, vol. 347, p. 543.
Chozinski, T.J., Halpern, A.R., Okawa, H., Kim, H.-J., Tremel, G.J., Wong, R.O.L., and Vaughan, J.C., Expansion microscopy with conventional antibodies and fluorescent proteins, Nat. Methods, 2016, vol. 13, p. 485.
Derevtsova, K.Z., Pchitskaya, E.I., Rakovskaya, A.V., and Bezprozvanny, I.B., Applying the expansion microscopy method in neurobiology, Ross. Fiziol. Zh. im. I.M. Sechenova, 2021, vol. 107, nos. 4–5, p. 568.
Feng, H., Wang, X., Xu, Z., Zhang, X., and Gao, Y., Super-resolution fluorescence microscopy for single cell imaging, in Single Cell Biomedicine, Singapore: Springer Singapore, 2018, p. 59.
Klementieva, N.V., Zagaynova, E.V., Lukyanov, K.A., and Mishin, A.S., The principles of super-resolution fluorescence microscopy (review), Sovrem. Tekhnol. Med., 2016, vol. 8, p. 130.
Li, H., Warden, A.R., He, J., Shen, G., and Ding, X., Expansion microscopy with ninefold swelling (NIFS) hydrogel permits cellular ultrastructure imaging on conventional microscope, Sci. Adv., 2022, vol. 8. https://doi.org/10.1126/sciadv.abm4006
Moore, D.A., Whatley, Z.N., Joshi, C.P., Osawa, M., and Erickson, H.P., Probing for binding regions of the FtsZ protein surface through site-directed insertions: discovery of fully functional FtsZ-fluorescent proteins, J. Bacteriol., 2017, vol. 199, p. e00553-16. https://doi.org/10.1128/JB.00553-16
Renz, M., Fluorescence microscopy—a historical and technical perspective, Cytometry, Part A, 2013, vol. 83, p. 767.
Sanderson, M.J., Smith, I., Parker, I., and Bootman, M.D., Fluorescence microscopy, Cold Spring Harbor Protoc., 2014, vol. 2014, p. pdb.top071795. https://doi.org/10.1101/pdb.top071795
Tillberg, P.W., Chen, F., Piatkevich, K.D., Zhao, Y., Yu, C.-C., English, B.P., Gao, L., Martorell, A., Suk, H.-J., Yoshida, F., DeGennaro, E.M., Roossien, D.H., Gong, G., Seneviratne, U., Tannenbaum, S.R., et al., Protein-retention expansion microscopy of cells and tissues labeled using standard fluorescent proteins and antibodies, Nat. Biotech., 2016, vol. 34, p. 987.
Vedyaykin, A.D., Sabantsev, A.V., Vishnyakov, I.E., Borchsenius, S.N., Fedorova, Y.V., Melnikov, A.S., Serdobintsev, P.Y., and Khodorkovskii, M.A., Localization microscopy study of FtsZ structures in E. coli cells during SOS-response, J. Phys. Conf. Ser., 2014, vol. 541, p. 012036. https://doi.org/10.1088/1742-6596/541/1/012036
Vedyaykin, A., Rumyantseva, N., Khodorkovskii, M., and Vishnyakov, I., SulA is able to block cell division in Escherichia coli by a mechanism different from sequestration, Biochim. Biophys. Res. Commun., 2020, vol. 525, p. 948.
Verma, S.C., Qian, Z., and Adhya, S.L., Architecture of the Escherichia coli nucleoid, PLoS Genet., 2019, vol. 15, p. e1008456. https://doi.org/10.1371/journal.pgen.1008456
Wassie, A.T., Zhao, Y., and Boyden, E.S., Expansion microscopy: principles and uses in biological research, Nat. Methods, 2019, vol. 16, p. 33.
ACKNOWLEDGMENTS
The work was carried out using scientific equipment of the Center of Shared Usage “The analytical center of nano- and biotechnologies of SPbPU”.
Funding
The study was supported by the Ministry of Education and Science of the Russian Federation (Grant MK-1345.2022.1.4).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
The authors declare that they have no conflicts of interest.
This article does not contain any studies using animals or human participants as subjects.
Additional information
Publisher’s Note.
Pleiades Publishing remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
About this article
Cite this article
Rumyantseva, N.A., Golofeeva, D.M., Vishnyakov, I.E. et al. Visualization of Single Escherichia coli Cells in the State of SOS Response using Expansion Microscopy. Cell Tiss. Biol. 17, 692–698 (2023). https://doi.org/10.1134/S1990519X2306010X
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S1990519X2306010X