Abstract
The plant transcription factor INNER NO OUTER (INO) plays a major role in development of the outer integument of bitegmic ovules. INO sequences of ten Capsicum species were identified. Levels of nucleotide and amino acid variability in Capsicum INO were determined, and 18 amino acid residue substitutions localized in the YABBY domain and in the interdomain region were revealed. The ZnF domain was invariant in all the analyzed Capsicum species. In the constructed dendrogram, all the Capsicum species form a single cluster in the INO clade, the basal branches to which are formed by the INO proteins of the Solanum and Nicotiana species.
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Gramzow, L., Ritz, M.S., and Theissen, G., On the origin of MADS-domain transcription factors, Trends Genet., 2010, vol. 26, no. 4, pp. 149–153. 1016/j.tig.2010.01.004
Melzer, R. and Theissen, G., MADS and more: transcription factors that shape the plant, Methods Mol. Biol., 2011, vol. 754, pp. 3–18. doi 10.1007/978-1-61779-154-3_1
Sarojam, R., Sapp, P.J., Goldshmidt, A., et al., Differentiating Arabidopsis shoots from leaves by combined YABBY activities, Plant Cell, 2010, vol. 22, no. 7, pp. 2113–2130. doi 10.1105/tpc.110.075853
Floyd, S.K. and Bowman, J.L., The ancestral developmental tool kit of land plants, Int. J. Plant Sci., 2007, vol. 168, no. 1, pp. 1–35. doi 10.1086/509079
Yamada, T., Yokota, S., Hirayama, Y., et al., Ancestral expression patterns and evolutionary diversification of YABBY genes in angiosperms, Plant J., 2011, vol. 67, no. 1, pp. 26–36. doi 10.1111/j.1365-313X.2011.04570.x
Bowman, J.L., Eshed, Y., and Baum, S.F., Establishment of polarity in angiosperm lateral organs, Trends Genet., 2002, vol. 18, no. 3, pp. 134–141. doi 10.1016/S0168-9525(01)02601-4
Villanueva, J.M., Broadhvest, J., Hauser, B.A., et al., INNER NO OUTER regulates abaxial-adaxial patterning in Arabidopsis ovules, Genes Dev., 1999, vol. 13, no. 23, pp. 3160–3169.
Bartholmes, C., Hidalgo, O., and Gleissberg, S., Evolution of the YABBY gene family with emphasis on the basal eudicot Eschscholzia californica (Papaveraceae), Plant Biol. (Stuttgart), 2012, vol. 14, no. 1, pp. 11–23. doi 10.1111/j.1438-8677.2011.00486.x
Finet, C., Floyd, S.K., Conway, S.J., et al., Evolution of the YABBY gene family in seed plants, Evol. Dev., 2016, vol. 18, no. 2, pp. 116–126. doi 10.1111/ede.12173
Bowman, J.L. and Smyth, D.R., CRABS CLAW, a gene that regulates carpel and nectary development in Arabidopsis, encodes a novel protein with zinc finger and helix-loop-helix domains, Development, 1999, vol. 126, pp. 2387–2396.
Meister, R.J., Oldenhof, H., Bowman, J.L., and Gasser, C.S., Multiple protein regions contribute to differential activities of YABBY proteins in reproductive development, Plant Physiol., 2005, vol. 137, no. 2, pp. 651–662. doi 10.1104/pp.104.055368
Skinner, D.J., Brown, R.H., Kuzoff, R.K., and Gasser, C.S., Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function, BMC Plant Biol., 2016, vol. 16, article 143. doi 10.1186/s12870-016-0835-z
McAbee, J.M., Hill, T.A., Skinner, D.J., et al., ABERRANT TESTA SHAPE encodes a KANADI family member, linking polarity determination to separation and growth of Arabidopsis ovule integuments, Plant J., 2006, vol. 46, no. 3, pp. 522–531. doi 10.1111/j.1365-313X.2006.02717.x
Han, H.Q., Liu, Y., Jiang, M.M., et al., Identification and expression analysis of YABBY family genes associated with fruit shape in tomato (Solanum lycopersicum L.), Genet. Mol. Res., 2015, vol. 14, no. 2, pp. 7079–7091. doi 10.4238/2015.June.29.1
Huang, Z., Van Houten, J., Gonzalez, G., et al., Genome-wide identification, phylogeny and expression analysis of SUN, OFP and YABBY gene family in tomato, Mol. Genet. Genomics, 2013, vol. 288, nos. 3–4, pp. 111–129. doi 10.1007/s00438-013-0733-0
Moscone, E.A., Scaldaferro, M.A., Grabiele, M., et al., The evolution of chili peppers (Capsicum–Solanaceae): a cytogenetic perspective, Acta Hortic., 2007, vol. 745, pp. 137–170. doi 10.17660/ActaHortic. 2007.745.5
Qin, C., Yu, C., Shen, Y., et al., Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization, Proc. Natl. Acad. Sci. U.S.A., 2014, vol. 111, no. 14, pp. 5135–5140. doi 10.1073/pnas.1400975111
Kim, S., Park, M., Yeom, S.I., et al., Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species, Nat. Genet., 2014, vol. 46, no. 3, pp. 270–278. doi 10.1038/ng.2877
Filyushin, M.A., Reshetnikova, N.M., Kochieva, E.Z., and Skryabin, K.G., Intraspecific variability of ITS sequences in the parasitic plant Monotropa hypopitys L. from the European Russian populations, Russ. J. Genet., 2015, vol. 51, no. 11, pp. 1149–1152. doi 10.1134/S102279541511006X
Kumar, S., Stecher, G., and Tamura, K., MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets, Mol. Biol. Evol., 2016, vol. 33, no. 7, pp. 1870–1874. doi 10.1093/molbev/msw054
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Original Russian Text © M.A. Filyushin, M.A. Slugina, O.N. Pyshnaya, E.Z. Kochieva, A.V. Shchennikova, 2018, published in Genetika, 2018, Vol. 54, No. 6, pp. 735–740.
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Filyushin, M.A., Slugina, M.A., Pyshnaya, O.N. et al. Structure Analysis of INNER NO OUTER (INO) Homologs in Capsicum Species. Russ J Genet 54, 753–757 (2018). https://doi.org/10.1134/S1022795418050034
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DOI: https://doi.org/10.1134/S1022795418050034