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Comparative analysis of STR and SNP polymorphism in the populations of sockeye salmon (Oncorhynchus nerka) from Eastern and Western Kamchatka

  • Animal Genetics
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Abstract

Sockeye salmon samples from five largest lacustrine-riverine systems of Kamchatka Peninsula were tested for polymorphism at six microsatellite (STR) and five single nucleotide polymorphism (SNP) loci. Statistically significant genetic differentiation among local populations from this part of the species range examined was demonstrated. The data presented point to pronounced genetic divergence of the populations from two geographical regions, Eastern and Western Kamchatka. For sockeye salmon, the individual identification test accuracy was higher for microsatellites compared to similar number of SNP markers. Pooling of the STR and SNP allele frequency data sets provided the highest accuracy of the individual fish population assignment.

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Authors and Affiliations

  1. Russian Federal Research Institute of Fisheries and Oceanography, Moscow, 107140, Russia

    A. M. Khrustaleva, A. A. Volkov, D. S. Stocklitskaya, N. S. Mugue & D. A. Zelenina

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  1. A. M. Khrustaleva
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  2. A. A. Volkov
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  3. D. S. Stocklitskaya
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  4. N. S. Mugue
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  5. D. A. Zelenina
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Correspondence to A. M. Khrustaleva.

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Original Russian Text © A.M. Khrustaleva, A.A. Volkov, D.S. Stocklitskaya, N.S. Mugue, D.A. Zelenina, 2010, published in Genetika, 2010, Vol. 46, No. 11, pp. 1544–1555.

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Khrustaleva, A.M., Volkov, A.A., Stocklitskaya, D.S. et al. Comparative analysis of STR and SNP polymorphism in the populations of sockeye salmon (Oncorhynchus nerka) from Eastern and Western Kamchatka. Russ J Genet 46, 1362–1372 (2010). https://doi.org/10.1134/S1022795410110128

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  • DOI: https://doi.org/10.1134/S1022795410110128

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