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Atomic Force Microscopy of Biopolymers on Graphite Surfaces

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Abstract

The main peculiarities of the interaction of DNA and protein molecules with graphite are considered. The results of atomic force microscopy study of the adsorption of DNA and proteins on the surface of highly oriented pyrolytic graphite are analyzed. These data are compared with the results of molecular dynamics simulation and optical studies. The dehybridization of DNA and the denaturation of many proteins on the graphite surface which are predominantly associated with π–π-stacking interaction (for DNA and proteins) and van der Waals and hydrophobic interactions (for proteins) are discussed. It is shown that the surface of highly oriented pyrolytic graphite is strongly liable to random environmental contaminations that considerably change the properties of the surface and, therefore, influence the kinetics of adsorption of biopolymer molecules and their conformation on the surface. Considerable attention is given to analysis of the interaction of biopolymers with the surface of highly oriented pyrolytic graphite modified with monolayers of organic molecules.

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REFERENCES

  1. G. Binnig, C. Quate, and C. Gerber, Phys. Rev. Lett. 56, 930 (1986).

    Article  CAS  PubMed  Google Scholar 

  2. H. G. Hansma, R. L. Sinsheimer, J. Groppe, T. C. Bruice, V. Elings, G. Gurley, M. Bezanilla, I. A. Mastrangelo, P. V. C. Hough, and P. K. Hansma, Scanning 15, 296 (1993).

    Article  CAS  PubMed  Google Scholar 

  3. R. Lal and S. A. John, Am. J. Physiol.: Cell Physiol. 266, 1 (1994).

    Article  Google Scholar 

  4. D. J. Müller, H. Janovjak, T. Lehto, L. Kuerschner, and K. Anderson, Prog. Biophys. Mol. Biol. 79, 1 (2002).

    Article  PubMed  Google Scholar 

  5. Y. F. Dufrêne, T. Ando, R. Garcia, D. Alsteens, D. Martinez-Martin, A. Engel, C. Gerber, and D. J. Müller, Nat. Nanotechnol. 12, 295 (2017).

    Article  PubMed  Google Scholar 

  6. M. O. Gallyamov, Macromol. Rapid Commun. 32, 1210 (2011).

    Article  CAS  PubMed  Google Scholar 

  7. U. M. Mirsaidov, H. Zheng, Y. Casana, and P. Matsudaira, Biophys. J. 102, L15 (2012).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. B. Carter and D. B. Williams, Transmission Electron Microscopy: Diffraction, Imaging and Spectrometry (Springer, Switzerland, 2016).

    Book  Google Scholar 

  9. K. D. Jandt, Adv. Eng. Mater. 9, 1035 (2007).

    Article  Google Scholar 

  10. L.-C. Xu, J. W. Bauer, and C. A. Siedlecki, Colloids Surf., B 124, 49 (2014).

    Article  CAS  Google Scholar 

  11. A. M. Pinto, I. C. Gonçalves, and F. D. Magalhães, Colloids Surf., B 111, 188 (2013).

    Article  CAS  Google Scholar 

  12. Q. Fu, Y. Si, L. Liu, J. Yu, and B. Ding, J. Colloid Interface Sci. 555, 11 (2019).

    Article  CAS  PubMed  Google Scholar 

  13. Y. L. Lyubchenko and L. S. Shlyakhtenko, Methods 47, 206 (2009).

    Article  CAS  PubMed  Google Scholar 

  14. Y. L. Lyubchenko, Biophys. Rev. 6, 181 (2014).

    Article  CAS  PubMed  Google Scholar 

  15. Y. L. Lyubchenko, J. Phys. D: Appl. Phys. 51, 403001 (2018).

    Article  Google Scholar 

  16. E. C. Beckwitt, M. Kong, and B. Van Houten, Semin. Cell Dev. Biol. 73, 220 (2018).

    Article  CAS  PubMed  Google Scholar 

  17. M. A. Skabkin, O. I. Kiselyova, K. G. Chernov, A. V. Sorokin, E. V. Dubrovin, I. V. Yaminsky, V. D. Vasiliev, and L. P. Ovchinnikov, Nucleic Acid Res. 32, 5621 (2004).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. D. J. Billingsley, W. A. Bonass, N. Crampton, J. Kirkham, and N. H. Thomson, Phys. Biol. 9, 021001 (2012).

    Article  PubMed  Google Scholar 

  19. J. Chao, P. Zhang, Q. Wang, N. Wu, F. Zhang, J. Hu, C. H. Fan, and B. Li, Nanoscale 8, 5842 (2016).

    Article  CAS  PubMed  Google Scholar 

  20. J. Adamcik and R. Mezzenga, Macromolecules 45, 1137 (2012).

    Article  CAS  Google Scholar 

  21. H. Sanchez, Y. Suzuki, M. Yokokawa, K. Takeyasu, and C. Wyman, Integr. Biol. 3, 1127 (2011).

    Article  CAS  Google Scholar 

  22. Q. Zhong, D. Inniss, K. Kjoller, and V. Elings, Surf. Sci. 290, L688 (1993).

    Article  CAS  Google Scholar 

  23. K. Xu, W. Sun, Y. Shao, F. Wei, X. Zhang, W. Wang, and P. Li, Nanotechnol. Rev. 7, 605 (2018).

    Article  CAS  Google Scholar 

  24. B. Stokke and D. Brant, Biopolymers 30, 1161 (1990).

    Article  CAS  PubMed  Google Scholar 

  25. F. Valle, M. Favre, P. De Los Rios, A. Rosa, and G. Dietler, Phys. Rev. Lett. 95, 158105 (2005).

    Article  PubMed  Google Scholar 

  26. E. Ercolini, F. Valle, J. Adamcik, G. Witz, R. Metzler, P. De Los Rios, J. Roca, and G. Dietler, Phys. Rev. Lett. 98, 058102 (2007).

    Article  PubMed  Google Scholar 

  27. C. Rivetti, M. Guthold, and C. Bustamante, J. Mol. Biol. 264, 919 (1996).

    Article  CAS  PubMed  Google Scholar 

  28. C. Frontali, E. Dore, A. Ferrauto, E. Gratton, A. Bettini, M. Pozzan, and E. Valdevit, Biopolymers 18, 1353 (1979).

    Article  CAS  PubMed  Google Scholar 

  29. D. J. Müller, M. Amrein, and A. Engel, J. Struct. Biol. 119, 172 (1997).

    Article  PubMed  Google Scholar 

  30. R. M. Pashley, J. Colloid Interface Sci. 80, 153 (1981).

    Article  CAS  Google Scholar 

  31. J. Vesenka, M. Guthold, C. Tang, D. Keller, E. Delaine, and C. Bustamante, Ultramicroscopy 42, 1243 (1992).

    Article  PubMed  Google Scholar 

  32. H. K. Christenson and N. H. Thomson, Surf. Sci. Rep. 71, 367 (2006).

    Article  Google Scholar 

  33. D. Pastre, O. Pietrement, P. Fusil, F. Landousy, J. Jeusset, M. O. David, C. Hamon, E. Le Cam, and A. Zozime, Biophys. J. 85, 2507 (2003).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  34. I. Sorel, O. Piétrement, L. Hamon, S. Baconnais, E. Le Cam, and D. Pastré, Biochemistry 45, 14675 (2006).

    Article  CAS  PubMed  Google Scholar 

  35. R. L. McCreery, Chem. Rev. 108, 2646 (2008).

    Article  CAS  PubMed  Google Scholar 

  36. A. A. Ensafi, E. Heydari-Bafrooei, M. Dinari, and S. Mallakpour, J. Mater. Chem. B 2, 3022 (2014).

    Article  CAS  PubMed  Google Scholar 

  37. A. Walcarius, Trends Anal. Chem. 38, 79 (2012).

    Article  CAS  Google Scholar 

  38. A. Bonanni and M. Pumera, ACS Nano 5, 2356 (2011).

    Article  CAS  PubMed  Google Scholar 

  39. S. K. Jang, J. Jang, W.-S. Choe, and S. Lee, ACS Appl. Mater. Interfaces 7, 1250 (2015).

    Article  CAS  PubMed  Google Scholar 

  40. A. Vesel, K. Elersic, M. Modic, I. Junkar, and M. Mozetic, Materials 7, 2014 (2014).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  41. V. Pesakova, Z. Klezl, K. Balik, and M. Adam, J. Mater. Sci.: Mater. Med. 11 (12), 793 (2000).

    CAS  Google Scholar 

  42. L. Zhang, Y. Sheng, A. Z. Yazdi, K. Sarikhani, F. Wang, Y. Jiang, J. Liu, T. Zheng, W. Wang, P. Ouyang, and P. Chen, Nanoscale 11, 2999 (2019).

    Article  CAS  PubMed  Google Scholar 

  43. X.-Q. Wei, L.-Y. Hao, X.-R. Shao, Q. Zhang, X.‑Q. Jia, Z.-R. Zhang, Y.-F. Lin, and Q. Peng, ACS Appl. Mater. Interfaces 7, 13367 (2015).

    Article  CAS  PubMed  Google Scholar 

  44. M. Zheng, A. Jagota, E. D. Semke, B. A. Diner, R. S. Mclean, S. R. Lustig, R. E. Richardson, and N. G. Tassi, Nat. Mater. 2, 338 (2003).

    Article  CAS  PubMed  Google Scholar 

  45. B. S. Husale, S. Sahoo, A. Radenovic, F. Traversi, P. Annibale, and A. Kis, Langmuir 26, 18078 (2010).

    Article  CAS  PubMed  Google Scholar 

  46. S. Manohar, A. R. Mantz, K. E. Bancroft, C.-Y. Hui, A. Jagota, and D. V. Vezenov, Nano Lett. 8, 4365 (2008).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  47. X. Xiong, J. Han, Y. Chen, S. Li, W. Xiao, and Q. Shi, Nanotecnology 32, 055601 (2020).

    Article  Google Scholar 

  48. J. E. Freund, M. Edelwirth, P. Kröbel, and W. M. Heckl, Phys. Rev. B 55, 5394 (1997).

    Article  CAS  Google Scholar 

  49. M. Edelwirth, J. Freund, S. J. Sowerby, and W. M. Heckl, Surf. Sci. 417, 201 (1998).

    Article  CAS  Google Scholar 

  50. J. Antony and S. Grimme, Phys. Chem. Chem. Phys. 10, 2722 (2008).

    Article  CAS  PubMed  Google Scholar 

  51. S. J. Sowerby, C. A. Cohn, W. M. Heckl, and N. G. Holm, Proc. Natl. Acad. Sci. U. S. A. 98, 820 (2001).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  52. X. Shi, Y. Kong, Y. Zhao, and H. Gao, Acta Mech. Sin 21, 249 (2005).

    Article  CAS  Google Scholar 

  53. L. Lin, Y. Liu, X. Zhao, and J. Li, Anal. Chem. 83, 8396 (2011).

    Article  CAS  PubMed  Google Scholar 

  54. K. B. Ricardo, A. Xu, M. Salim, F. Zhou, and H. Liu, Langmuir 33, 3991 (2017).

    Article  CAS  PubMed  Google Scholar 

  55. L. Tang, H. Chang, Y. Liu, and J. Li, Adv. Funct. Mater. 22, 3083 (2012).

    Article  CAS  Google Scholar 

  56. S. He, B. Song, D. Li, C. Zhu, W. Qi, Y. Wen, L. Wang, S. Song, H. Fang, and C. Fan, Adv. Funct. Mater. 20, 453 (2010).

    Article  CAS  Google Scholar 

  57. H. S. Kim, N. A. Brown, S. Zauscher, and Y. G. Yingling, Langmuir 36, 931 (2020).

    Article  CAS  PubMed  Google Scholar 

  58. D. Coglitore, J.-M. Janot, and S. Balme, Adv. Colloid Interface Sci. 270, 278 (2019).

    Article  CAS  PubMed  Google Scholar 

  59. M. Rabe, D. Verdes, and S. Seeger, Adv. Colloid Interface Sci. 162, 87 (2011).

    Article  CAS  PubMed  Google Scholar 

  60. W. Norde and J. Lyklema, Adv. Colloid Interface Sci. 179, 5 (2012).

    Article  PubMed  Google Scholar 

  61. Z. J. Deng, M. Liang, M. Monteiro, I. Toth, and R. F. Minchin, Nat. Nanotechnol 6, 39 (2011).

    Article  CAS  PubMed  Google Scholar 

  62. J. M. Bolivar and B. Nidetzky, Biochim. Biophys. Acta, Proteins Proteomics 1868, 140333 (2020).

    Article  CAS  PubMed  Google Scholar 

  63. J. Liu and Q. Peng, Acta Biomater. 55, 13 (2017).

    Article  CAS  PubMed  Google Scholar 

  64. W. Norde, Colloids Surf., B 61, 1 (2008).

    Article  CAS  Google Scholar 

  65. W. Norde and C. E. Giacomelli, J. Biotechnol. 79, 259 (2000).

    Article  CAS  PubMed  Google Scholar 

  66. E. P. Vieira, S. Rocha, Pereira M. Carmo, H. Möhwald, and M. A. N. Coelho, Langmuir 25, 9879 (2009).

    Article  CAS  PubMed  Google Scholar 

  67. A. Sethuraman and G. Belfort, Biophys. J. 88, 1322 (2005).

    Article  CAS  PubMed  Google Scholar 

  68. J. S. Sharp, J. A. Forrest, and R. A. L. Jones, Biochemistry 41, 15810 (2002).

    Article  CAS  PubMed  Google Scholar 

  69. T. J. Su, J. R. Lu, R. K. Thomas, Z. F. Cui, and J. Penfold, J. Colloid Interface Sci. 203, 419 (1998).

    Article  CAS  PubMed  Google Scholar 

  70. D. R. Lu and K. Park, J. Colloid Interface Sci. 144, 271 (1991).

    Article  CAS  Google Scholar 

  71. M. W. Mosesson, J. Thromb. Haemostasis 3, 1894 (2005).

    Article  CAS  Google Scholar 

  72. T. C. Ta, M. T. Sykes, and M. T. McDermott, Langmuir 14, 2435 (1998).

    Article  CAS  Google Scholar 

  73. T. C. Ta and M. T. McDermott, Colloids Surf., B 32, 191 (2003).

    Article  CAS  Google Scholar 

  74. E. V. Dubrovin, N. A. Barinov, T. E. Schäffer, and D. V. Klinov, Langmuir 35, 9732 (2019).

    Article  CAS  PubMed  Google Scholar 

  75. A. Agnihotri and C. A. Siedlecki, Langmuir 20, 8846 (2004).

    Article  CAS  PubMed  Google Scholar 

  76. K. L. Marchin and C. L. Berrie, Langmuir 19, 9883 (2003).

    Article  CAS  Google Scholar 

  77. R. T. T. Gettens, Z. J. Bai, and J. L. Gilbert, J. Biomed. Mater. Res., Part A 72, 246 (2005).

    Google Scholar 

  78. R. Ohta, N. Saito, T. Ishizaki, and O. Takai, Surf. Sci. 600, 1674 (2006).

    Article  CAS  Google Scholar 

  79. N. A. Barinov, V. V. Prokhorov, E. V. Dubrovin, and D. V. Klinov, Colloids Surf., B 146, 777 (2016).

    Article  CAS  Google Scholar 

  80. G. Vidarsson, G. Dekkers, and T. Rispens, Front. Immunol. 5, 1 (2014).

    Article  CAS  Google Scholar 

  81. D. Cullen and C. Lowe, J. Colloid Interface Sci. 166, 102 (1994).

    Article  CAS  Google Scholar 

  82. J. G. Vilhena, A. C. Dumitru, E. T. Herruzo, J. I. Mendieta-Moreno, R. Garcia, P. A. Serena, R. Pérez, Nanoscale 8, 13463 (2016).

    Article  CAS  PubMed  Google Scholar 

  83. A. Bujacz, Acta Crystallogr., Sect. D: Biol. Crystallogr. 68, 1278 (2012).

    Article  CAS  Google Scholar 

  84. S. Rauschenbach, F. L. Stadler, E. Lunedei, N. Malinowski, S. Koltsov, G. Costantini, and K. Kern, Small 2, 540 (2006).

    Article  CAS  PubMed  Google Scholar 

  85. A. Orasanu-Gourlay and R. H. Bradley, Adsorpt. Sci. Technol. 24, 117 (2006).

    Article  CAS  Google Scholar 

  86. X. Peng, H. Fu, R. Liu, L. Zhao, Y. Zu, F. Xu, and Z. Liu, Scanning 37, 158 (2015).

    Article  CAS  PubMed  Google Scholar 

  87. S. Boussaad, N. J. Tao, and R. Arechabaleta, Chem. Phys. Lett. 280, 397 (1997).

    Article  CAS  Google Scholar 

  88. Arzola K. Gonzalez, Orive A. Gonzalez, M. C. Arevalo, L. Vazquez, Creus A. Hernandez, and M. A. Falcon, Int. J. Electrochem. Sci. 7, 1011 (2012).

    Google Scholar 

  89. V. V. Korolkov, S. Allen, C. J. Roberts, I. Gozes, and S. J. B. Tendler, Peptides 62, 55 (2014).

    Article  CAS  PubMed  Google Scholar 

  90. C. Ge, J. Du, L. Zhao, L. Wang, Y. Liu, D. Li, Y. Yang, R. Zhou, Y. Zhao, Z. Chai, and C. Chen, Proc. Natl. Acad. Sci. U. S. A. 108, 16968 (2011).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  91. J. Katoch, S. N. Kim, Z. Kuang, B. L. Farmer, R. R. Naik, S. A. Tatulian, and M. Ishigami, Nano Lett. 12, 2342 (2012).

    Article  CAS  PubMed  Google Scholar 

  92. T. Alava, J. A. Mann, C. Théodore, J. J. Benitez, W. R. Dichtel, J. M. Parpia, and H. G. Craighead, Anal. Chem. 85, 2754 (2013).

    Article  CAS  PubMed  Google Scholar 

  93. J. A. Mann, T. Alava, H. G. Craighead, and W. R. Dichtel, Angew. Chem., Int. Ed. 52, 3177 (2013).

    Article  CAS  Google Scholar 

  94. B. Hou and A. D. Radadia, ACS Biomater. Sci. Eng. 4, 675 (2018).

    Article  CAS  PubMed  Google Scholar 

  95. X. Zou, S. Wei, J. Jasensky, M. Xiao, Q. Wang, C. L. Brooks, and Z. Chen, J. Am. Chem. Soc. 139, 1928 (2017).

    Article  CAS  PubMed  Google Scholar 

  96. J. Guo, X. Yao, L. Ning, Q. Wang, H. Liu, RSC Adv. 4, 9953 (2014).

  97. T. R. Walsh and M. R. Knecht, Bioconjugate Chem. 30, 2727 (2019).

    Article  CAS  Google Scholar 

  98. S. Koehler, F. Schmid, and G. Settanni, Langmuir 31, 13180 (2015).

    Article  CAS  Google Scholar 

  99. G. Raffaini and F. Ganazzoli, Langmuir 19, 3403 (2003).

    Article  CAS  Google Scholar 

  100. G. Raffaini and F. Ganazzoli, J. Biomed. Mater. Res., Part A 76, 638 (2006).

    Google Scholar 

  101. C. Muecksch and H. M. Urbassek, Langmuir 27, 12938 (2011).

    Article  Google Scholar 

  102. C. Muecksch and H. M. Urbassek, Langmuir 32, 9156 (2016).

    Article  CAS  Google Scholar 

  103. C. Muecksch, C. Roesch, C. Mueller-Renno, C. Ziegler, and H. M. Urbassek, J. Phys. Chem. C 119, 12496 (2015).

    Article  CAS  Google Scholar 

  104. G. Raffaini and F. Ganazzoli, Langmuir 20, 3371 (2004).

    Article  CAS  PubMed  Google Scholar 

  105. D. Martinez-Martin, R. Longuinhos, J. G. Izquierdo, A. Marele, S. S. Alexandre, M. Jaafar, J. M. Gomez-Rodriguez, L. Banares, J. M. Soler, and J. Gomez-Herrero, Carbon 61, 33 (2013).

    Article  CAS  Google Scholar 

  106. Z. Li, Y. Wang, A. Kozbial, G. Shenoy, F. Zhou, R. McGinley, P. Ireland, B. Morganstein, A. Kunkel, and S. P. Surwade, Nat. Mater. 12, 925 (2013).

    Article  CAS  PubMed  Google Scholar 

  107. A. Kozbial, Z. Li, J. Sun, X. Gong, F. Zhou, Y. Wang, H. Xu, H. Liu, and L. Li, Carbon 74, 218 (2014).

    Article  CAS  Google Scholar 

  108. A. Temiryazev, A. Frolov, and M. Temiryazeva, Carbon 143, 30 (2019).

    Article  CAS  Google Scholar 

  109. S. Seibert, S. Klassen, A. Latus, R. Bechstein, and A. Kühnle, Langmuir 36, 7789 (2020).

    Article  CAS  PubMed  Google Scholar 

  110. D. V. Klinov, E. V. Dubrovin, and I. V. Yaminsky, AIP Conf. Proc. 696, 452 (2003).

    Article  Google Scholar 

  111. D. V. Klinov, E. V. Dubrovin, and I. V. Yaminsky, Phys. Low-Dimens. Struct. 3–4, 119 (2003).

    Google Scholar 

  112. D. V. Klinov, L. P. Martynkina, V. Yu. Yurchenko, V. V. Demin, S. A. Streltsov, Yu. A. Gerasimov, and Yu. Yu. Vengerov, Russ. J. Bioorg. Chem. 29, 363 (2003).

    Article  CAS  Google Scholar 

  113. A. J. Groszek, Proc. R. Soc. London, Ser. A 314 (1519), 473 (1970).

    Article  Google Scholar 

  114. S. Medina, J. J. Benitez, M. A. Castro, C. Cerrillos, C. Millan, and M. D. Alba, Thin Solid Films 539, 194 (2013).

    Article  CAS  Google Scholar 

  115. F. Silly, Nanotecnology 23, 225603 (2012).

    Article  Google Scholar 

  116. T. Yang, S. Berber, J.-F. Liu, G. P. Miller, and D. Tomanek, J. Chem. Phys. 128, 124709 (2008).

    Article  PubMed  Google Scholar 

  117. P. Krukowski, Z. Klusek, W. Olejniczak, R. Klepaczko, M. Puchalski, P. Dabrowski, P. J. Kowalczyk, and K. Gwozdzinski, Appl. Surf. Sci. 255, 8769 (2009).

    Article  CAS  Google Scholar 

  118. V. V. Prokhorov, D. V. Klinov, A. A. Chinarev, A. B. Tuzikov, I. V. Gorokhova, and N. V. Bovin, Langmuir 27, 5879 (2011).

    Article  CAS  PubMed  Google Scholar 

  119. T. Hiasa and H. Onishi, Langmuir 29, 5801 (2013).

    Article  CAS  PubMed  Google Scholar 

  120. I. De Cat, C. Gobbo, B. Van Averbeke, R. Lazzaroni, S. De Feyter, and J. van Esch, J. Am. Chem. Soc. 133, 20942 (2011).

    Article  CAS  PubMed  Google Scholar 

  121. P. N. Dickerson, A. M. Hibberd, N. Oncel, and S. L. Bernasek, Langmuir 26, 18155 (2010).

    Article  CAS  PubMed  Google Scholar 

  122. D. Boer, T. Habets, M. J. J. Coenen, M. van der Maas, T. P. J. Peters, M. J. Crossley, T. Khoury, A. E. Rowan, R. J. M. Nolte, S. Speller, and J. A. A. W. Elemans, Langmuir 27, 2644 (2011).

    Article  Google Scholar 

  123. C. Arrigoni, G. Schull, D. Bleger, L. Douillard, C. Fiorini-Debuisschert, F. Mathevet, D. Kreher, A.‑J. Attias, and F. Charra, J. Phys. Chem. Lett. 1, 190 (2010).

    Article  CAS  Google Scholar 

  124. E. V. Dubrovin, J. W. Gerritsen, J. Zivkovic, I. V. Yaminsky, and S. Speller, Colloids Surf., B 76, 63 (2010).

    Article  CAS  Google Scholar 

  125. J. Adamcik, S. Tobenas, G. Di Santo, D. Klinov, and G. Dietler, Langmuir 25, 3159 (2009).

    Article  CAS  PubMed  Google Scholar 

  126. E. V. Dubrovin, S. Speller, and I. V. Yaminsky, Langmuir 30, 15423 (2014).

    Article  CAS  PubMed  Google Scholar 

  127. E. V. Dubrovin, M. Schachtele, and T. E. Schäffer, RSC Adv. 6, 79584 (2016).

  128. A. Podesta, M. Indrieri, D. Brogioli, G. S. Manning, P. Milani, R. Guerra, L. Finzi, and D. Dunlap, Biophys. J. 89, 2558 (2005).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  129. T. R. Strick, J. F. Allemand, D. Bensimon, A. Bensimon, and V. Croquette, Science 271 (5257), 1835 (1996).

    Article  CAS  PubMed  Google Scholar 

  130. T. R. Strick, J. F. Allemand, D. Bensimon, and V. Croquette, Biophys. J. 74, 2016 (1998).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  131. S. Cocco and R. Monasson, Phys. Rev. Lett. 83, 5178 (1999).

    Article  CAS  Google Scholar 

  132. E. V. Dubrovin, M. Schächtele, D. V. Klinov, and T. E. Schäffer, Langmuir 33, 10027 (2017).

    Article  CAS  PubMed  Google Scholar 

  133. D. V. Klinov, A. D. Protopopova, D. S. Andrianov, R. I. Litvinov, and J. W. Weisel, Colloids Surf., B 196, 111321 (2020).

    Article  CAS  Google Scholar 

  134. J. Adamcik, D. V. Klinov, G. Witz, S. K. Sekatskii, and G. Dietler, FEBS Lett. 580, 5671 (2006).

    Article  CAS  PubMed  Google Scholar 

  135. D. V. Klinov, T. V. Neretina, V. V. Prokhorov, T. V. Dobrynina, K. G. Aldarov, and V. V. Demin, Biochemistry (Moscow) 74, 1150 (2009).

    Article  CAS  Google Scholar 

  136. K. Rechendorff, G. Witz, J. Adamcik, and G. Dietler, J. Chem. Phys. 131, 095103 (2009).

    Article  PubMed  Google Scholar 

  137. A. V. Frolov, N. A. Barinov, D. V. Klinov, V. V. Koledov, P. V. Lega, A. P. Orlov, and A. M. Smolovich, J. Commun. Technol. Electron. 63, 1226 (2018).

    Article  CAS  Google Scholar 

  138. V. V. Prokhorov, N. A. Barinov, K. A. Prusakov, E. V. Dubrovin, M. D. Frank-Kamenetskii, and D. V. Klinov, Nano-Micro Lett. 13, 130 (2021).

    Article  CAS  Google Scholar 

  139. A. V. Sekridova, A. M. Varizhuk, O. N. Tatarinova, V. V. Severov, N. A. Barinov, I. P. Smirnov, V. N. Lazarev, D. V. Klinov, and G. E. Pozmogova, Biochemistry (Moscow), Suppl. Ser. B 11, 62 (2017).

    Google Scholar 

  140. A. M. Varizhuk, A. D. Protopopova, V. B. Tsvetkov, N. A. Barinov, V. V. Podgorsky, M. V. Tankevich, M. A. Vlasenok, V. V. Severov, I. P. Smirnov, E. V. Dubrovin, D. V. Klinov, and G. E. Pozmogova, Nucleic Acid Res. 46, 8978 (2018).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  141. A. D. Protopopova, V. B. Tsvetkov, A. M. Varizhuk, N. A. Barinov, V. V. Podgorsky, D. V. Klinov, and G. E. Pozmogova, Phys. Chem. Chem. Phys. 20, 3543 (2018).

    Article  CAS  PubMed  Google Scholar 

  142. V. A. Brylev, A. V. Ustinov, V. B. Tsvetkov, N. A. Barinov, I. O. Aparin, K. A. Sapozhnikova, Y. Y. Berlina, E. A. Kokin, D. V. Klinov, T. S. Zatsepin, and V. A. Korshun, Langmuir 36, 15119 (2020).

    Article  CAS  PubMed  Google Scholar 

  143. A. Vologodskii and M. D. Frank-Kamenetskii, Nucleic Acid Res. 41, 6785 (2013).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  144. A. D. Protopopova, N. A. Barinov, E. G. Zavyalova, A. M. Kopylov, V. I. Sergienko, and D. V. Klinov, J. Thromb. Haemostasis 13, 570 (2015).

    Article  CAS  Google Scholar 

  145. A. D. Protopopova, R. Litvinov, D. K. Galanakis, C. Nagaswami, N. A. Barinov, A. R. Mukhitov, D. V. Klinov, and J. Weisel, Nanoscale 9, 13707 (2017).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  146. N. A. Barinov, A. D. Protopopova, E. V. Dubrovin, and D. V. Klinov, Colloids Surf., B 167, 370 (2018).

    Article  CAS  Google Scholar 

  147. N. A. Barinov, I. I. Vlasova, A. V. Sokolov, V. A. Kostevich, E. V. Dubrovin, and D. V. Klinov, Biochim. Biophys. Acta, Gen. Subj. 1862, 2862 (2018).

    Article  CAS  Google Scholar 

  148. A. D. Protopopova, A. Ramirez, D. V. Klinov, R. I. Litvinov, and J. W. Weisel, J. Thromb. Haemostasis 17, 737 (2019).

    Article  Google Scholar 

  149. E. V. Dubrovin, D. V. Klinov, and T. E. Schäffer, Colloids Surf., B 193, 111077 (2020).

    Article  CAS  Google Scholar 

  150. A. S. Rose, A. R. Bradley, Y. Valasatava, J. M. Duarte, A. Prlić, and P. W. Rose, Bioinformatics 34, 3755 (2018).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  151. J. M. Kollman, L. Pandi, M. R. Sawaya, M. Riley, and R. F. Doolittle, Biochemistry 48, 3877 (2009).

    Article  CAS  PubMed  Google Scholar 

  152. A. Quist, L. Bjorck, C. Reimann, S. Oscarsson, and B. Sundqvist, Surf. Sci. 325, L406 (1995).

    Article  CAS  Google Scholar 

  153. B. Jachimska, K. Tokarczyk, M. Lapczynska, A. Puciul-Malinowska, and S. Zapotoczny, Colloids Surf., A 489, 163 (2016).

    Article  CAS  Google Scholar 

  154. E. V. Dubrovin, L. A. Dadinova, M. V. Petoukhov, E. Yu. Soshinskaya, A. A. Mozhaev, D. V. Klinov, T. E. Schäffer, E. V. Shtykova, and O. V. Batishchev, J. Mol. Biol. 433, 166930 (2021).

    Article  CAS  PubMed  Google Scholar 

  155. R. G. Ovodova, S. V. Popov, O. A. Bushneva, V. V. Golovchenko, A. O. Chizhov, D. V. Klinov, and Yu. S. Ovodov, Biochemistry (Moscow) 71, 538 (2006).

    Article  CAS  Google Scholar 

  156. N. A. Barinov, A. P. Tolstova, E. A. Bersenev, D. A. Ivanov, E. V. Dubrovin, and D. V. Klinov, Colloids Surf. B 206, 111921 (2021).

    Article  CAS  Google Scholar 

  157. K. Nakanishi, T. Sakiyama, and K. Imamura, J. Biosci. Bioeng 91, 233 (2001).

    Article  CAS  PubMed  Google Scholar 

  158. P. Roach, D. Farrar, and C. C. Perry, J. Am. Chem. Soc. 127, 8168 (2005).

    Article  CAS  PubMed  Google Scholar 

  159. C. Blaszykowski, S. Sheikh, and M. Thompson, Trends Biotechnol. 32, 61 (2014).

    Article  CAS  PubMed  Google Scholar 

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Funding

This work was supported by the Russian Foundation for Basic Research (project no. 20-13-50047).

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Authors and Affiliations

  1. Faculty of Physics, Moscow State University, 119991, Moscow, Russia

    E. V. Dubrovin

  2. Federal Research and Clinical Center of Physical-Chemical Medicine, Federal Medical Biological Agency, 119435, Moscow, Russia

    E. V. Dubrovin & D. V. Klinov

  3. Sirius University of Science and Technology, 354340, Sochi, Russia

    D. V. Klinov

Authors
  1. E. V. Dubrovin
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  2. D. V. Klinov
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Correspondence to E. V. Dubrovin.

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Translated by T. Soboleva

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Dubrovin, E.V., Klinov, D.V. Atomic Force Microscopy of Biopolymers on Graphite Surfaces. Polym. Sci. Ser. A 63, 601–622 (2021). https://doi.org/10.1134/S0965545X2106002X

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