Abstract
The biodegradation patterns of two types of PHA, a 3-hydroxybutyrate (3-PHB) polymer and a 3-hydroxybutyrate and 3-hydroxyvalerate (3-PHB/3-PHV) copolymer, were studied in tropical marine environments (Dam Bay, South China Sea, Nha Trang, Vietnam). No reliable differences in the degradation of 3-PHB and 3-PHB/3-PHV were revealed. It was shown that the degradation process depended mainly on the shape of a polymer product and its production method: the degradation of polymer films was found to be more active than that of molded solids. A decrease in the molecular mass of both types of PHA was detected in the course of the degradation of PHA samples. However, the degree of PHA crystallinity did not change; that is, the levels of degradation of both the amorphous and crystalline phases of PHA were almost the same. Among microbial PHA degraders, three bacterial strains, Bacillus sp. IBP-V002, Enterobacter cloacae sp. IBP-V001, and Gracilibacillus sp. IBP-V003, were identified based on the results of morphological, biochemical, and molecular phylogenetic analyses. The ability of the representatives of the genera Gracilibacillus and Enterobacter to degrade PHA was revealed for the first time.
Similar content being viewed by others
References
Jendrossek, D. and Handrick, R., Microbial Degradation of Polyhydroxyalkanoates, Ann. Rev. Microbiol., 2002, vol. 56, pp. 403–432.
Mergaert, J. and Swings, J., Biodiversity of Microorganisms That Degrade Bacterial and Synthetic Polyesters, J. Ind. Microbiol., 1996, vol. 17, pp. 463–469.
Suyama, T., Tokiwa, Y., Ouichanpagdee, P., Kanagawa, T., and Kamagata, Y., Phylogenetic Affiliation of Soil Bacteria That Degrade Aliphatic Polyesters Available Commercially as Biodegradable Plastics, Appl. Environ. Microbiol., 1998, vol. 64, pp. 5008–5011.
Takaku, H., Kimoto, A., Kodaira, S., Nashimoto, M., and Takagi, M., Isolation of a Gram-Positive Poly(3-Hydroxybutyrate) (PHB)-Degrading Bacterium from Compost, and Cloning and Characterization of a Gene Encoding PHB Depolymerase of Bacillus megaterium N-18-25-9, FEMS Microbiol. Letts., 2006, vol. 264, pp. 152–159.
Kasuya, K.I., Inoue, Y., Tanaka, T., Akehata, T., Iwata, T., Fukui, T., and Doi, Y., Biochemical and Molecular Characterization of the Polyhydroxybutyrate Depolymerase of Comamonas acidovorans YM1609, Isolated from Freshwater, Appl. Environ. Microbiol., 1997, vol. 63, pp. 4844–4852.
Volova, T.G., Gladyshev, M.I., Trusova, M.Yu., and Zhila, N.O., Degradation of Polyhydroxyalkanoates and the Composition of Microbial Destructors under Natural Conditions, Mikrobiologiya, 2006, vol. 80, no. 5, pp. 682–688 [Microbiology (Engl. Transl.), vol. 80, no. 5, pp. 593–598].
Volova, T.G., Gladyshev, M.I., Trusova, M.Y., and Zhila, N.O., Degradation of Polyhydroxyalkanoates in Eutrophic Reservoir, Polymer Degradation and Stability, 2007, vol. 92, pp. 580–586.
Voinova, O.N., Kozhevnikova, N.A., Gladyshev, M.I., and Volova, T.G., Bioplastic Degradation in Natural Reservoirs Differing in Ecological Parameters, Dokl. Akad. Nauk, 2007, vol. 417, no. 1, pp. 130–132 [Doklady. Biol. Sci. (Engl. Transl.), vol. 417, no. 1, pp. 426–428].
Voinova, O.N., Gladyshev, M.I., and Volova, T.G., Comparative Study of PHA Degradation in Natural Reservoirs Having Various Types of Ecosystems, Macromol. Symposia, 2008, vol. 269, pp. 34–37.
Kasuya, K., Mitomo, H., Nakahara, M., Akiba, A., Kudo, T., and Doi, Y., Identification of a Marine Benthic P(3HB)-Degrading Bacterium Isolate and Characterization of Its P(3HB) Depolymerase, Biomacromol., 2000, vol. 1, pp. 194–201.
Ghanem, N.B., Mabrouk, M.E., Sabry, S.A., and El-Badan, D.E., Degradation of Polyesters by a Novel Marine Nocardiopsis aegyptia sp. nov.: Application of Plackett-Burman Experimental Design for the Improvement of PHB Depolymerase Activity, J. Gen. Appl. Microbiol., 2005, vol. 51, pp. 151–158.
Rutkowska, M., Krasowska, K., Heimowska, A., Adamus, G., Sobota, M., Musió, M., Janeczek, H., Sikorska, W., Krzan, A., Žagar, E., and Kowalczuk, M., Environmental Degradation of Blends of Atactic Poly[(R,S)-3-Hydroxybutyrate] with Natural PHBV in Baltic Sea Water and Compost with Activated Sludge, J. Polym. Environ, 2008, vol. 16, pp. 183–191.
Doi, Y., Kanesawa, Y., Tanahashi, N., and Kumagai, Y., Biodegradation of Microbial Polyesters in the Marine Environment, Polym. Degrad. Stub., 1992, vol. 36, pp. 173–177.
Imam, S.H., Gordon, S.H., Shorgen, R.L., Toseson, T.R., Govind, N.S., and Greene, R.V., Degradation of Starch-Poly(Beta-Hydroxybutyrate-co-Beta-Hydroxyvalerate) Bioplastic in Tropical Coastal Waters, Appl. Environ. Microbiol., 1999, vol. 65, pp. 431–437.
Leathers, T.D., Govind, N.S., and Greene, R.V., Biodegradation of Poly 3HB-co-3HV by a Tropical Marine Bacterium Pseudoalteromonas sp. NRRL B-30083, J. Polym. Environ., 2000, vol. 8, pp. 119–124.
Kita, K., Mashiba, S., Nagita, M., Ishimaru, K., Okamoto, K., Yanase, H., and Kato, N., Cloning of Poly(3-Hydroxybutyrate) Depolymerase from a Marine Bacterium, Alcaligenes faecalis AE122, and Characterization of Its Gene Product, Biochim. Biophys. Acta, 1997, vol. 1352, pp. 113–122.
Mabrouk, M.M. and Sabry, S.A., Degradation of Poly (3-Hydroxybutyrate) and Its Copolymer Poly (3-Hydroxybutyrate-co-3-Hydroxyvalerate) by a Marine Streptomyces sp. SNG9, Microbiol. Res, 2001, vol. 156, pp. 323–335.
Volova, T.G. and Kalacheva, G.S., The Synthesis of Hydroxybutyrate and Hydroxyvalerate Copolymers by the Bacterium Ralstonia eutropha, Mikrobiologiya, 2005, vol. 74, no. 1, pp. 63–69 [Microbiology (Engl. Transl.), vol. 74, no. 1, pp. 54–59].
Netrusov, A.I., Egorova, M.A., and Zakharchuk, L.M., Praktikum po mikrobiologii (Practical Course in Microbiology), Moscow: Akademiya, 2005.
Bergey’s Manual of Systematic Bacteriology, vol. 2: The Proteobacteria, 2nd ed., Garrity, G.M., Ed., Springer, 2005.
The Prokaryotes. A handbook on the biology of bacteria, vols. 1–7, 3rd ed., Dworkin, M. et al., Eds., Springer, 2006.
Mergaert, J., Webb, A., Anderson, C., Wouters, A., and Swings, J., Microbial Degradation of Poly(3-Hydroxybutyrate) and Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate) in Soils, Appl. Environ. Microbiol., 1993, vol. 59, pp. 3233–3238.
Van de Peer, Y. and De Wachter, R., TREECON: a Software Package for the Construction and Drawing of Evolutionary Trees, Comput. Applic. Biosci., 1993, vol. 9, pp. 177–182.
Volova, T.G., Belyaeva, O.G., Plotnikov, V.F., and Puzyr’, A.P., Studies of Biodegradation of Microbial Polyhydroxyalkanoates, Prikl. Biokhim. Mikrobiol., 1998, vol. 34, no. 5, pp. 539–543 [Appl. Biochem. Microbiol. (Engl. Transl.), vol. 34, no. 5, pp. 488–492].
Abe, H., Marsubara, I., and Doi, Y., Physical Properties and Enzymatic Degradability of Polymer Blends of Bacterial Poly[(R)-3-Hydroxybutyrate] and Poly[(R,S)-3-Hydroxybutyrate] Stereoisomers, Macromol., 1995, vol. 28, pp. 844–853.
Beleneva, I.A., Zhukova, N.V., Lan, Kh., and Tran, D.Kh., Taxonomic Composition of Bacteria Associated with Cultivated Mollusks Crassostrea lugubris and Perna viridis and with the Water of the Gulf of Nha Trang Lagoon, Vietnam, Mikrobiologiya, 2007, vol. 76, no. 2, pp. 253–262 [Microbiology (Engl. Transl.), vol. 76, no. 2, pp. 220–228].
Beleneva, I.A. and Zhukova, N.V., Seasonal Dynamics of Cell Numbers and Biodiversity of Marine Heterotrophic Bacteria Inhabiting Invertebrates and Water Ecosystems of the Peter the Great Bay, Sea of Japan, Mikrobiologiya, 2009, vol. 78, no. 3, pp. 414–420 [Microbiology (Engl. Transl.), vol. 78, no. 3, pp. 369–375].
Stackebrandt, E. and Goebel, B.M., Taxonomic Note: a Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology, Int. J. Syst. Bacteriol., 1994, vol. 44, pp. 846–849.
Ludwig, W., Strunk, O., Klugbauer, S., Weizenegger, M., Neumaier, J., Bachleither, M., and Schleifer, K.H., Bacterial Phylogeny Based on Comparative Sequence Analysis, Electrophoresis, 1998, vol. 19, pp. 554–568.
Author information
Authors and Affiliations
Corresponding author
Additional information
Original Russian Text © T.G. Volova, A.N. Boyandin, A.D. Vasil’ev, V. A. Karpov, I. V. Kozhevnikov, S.V. Prudnikova, V.P. Rudnev, Büi Bá Xuån, Vũ Vi\( \mathop e\limits^ \circ \)t Dũng, I.I. Gitel’zon, 2011, published in Mikrobiologiya, 2011, Vol. 80, No. 2, pp. 266–274.
Rights and permissions
About this article
Cite this article
Volova, T.G., Boyandin, A.N., Vasil’ev, A.D. et al. Biodegradation of polyhydroxyalkanoates (PHAs) in the South China Sea and identification of PHA-degrading bacteria. Microbiology 80, 252–260 (2011). https://doi.org/10.1134/S0026261711020184
Received:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S0026261711020184