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Biodegradation of polyhydroxyalkanoates (PHAs) in the South China Sea and identification of PHA-degrading bacteria

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Abstract

The biodegradation patterns of two types of PHA, a 3-hydroxybutyrate (3-PHB) polymer and a 3-hydroxybutyrate and 3-hydroxyvalerate (3-PHB/3-PHV) copolymer, were studied in tropical marine environments (Dam Bay, South China Sea, Nha Trang, Vietnam). No reliable differences in the degradation of 3-PHB and 3-PHB/3-PHV were revealed. It was shown that the degradation process depended mainly on the shape of a polymer product and its production method: the degradation of polymer films was found to be more active than that of molded solids. A decrease in the molecular mass of both types of PHA was detected in the course of the degradation of PHA samples. However, the degree of PHA crystallinity did not change; that is, the levels of degradation of both the amorphous and crystalline phases of PHA were almost the same. Among microbial PHA degraders, three bacterial strains, Bacillus sp. IBP-V002, Enterobacter cloacae sp. IBP-V001, and Gracilibacillus sp. IBP-V003, were identified based on the results of morphological, biochemical, and molecular phylogenetic analyses. The ability of the representatives of the genera Gracilibacillus and Enterobacter to degrade PHA was revealed for the first time.

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References

  1. Jendrossek, D. and Handrick, R., Microbial Degradation of Polyhydroxyalkanoates, Ann. Rev. Microbiol., 2002, vol. 56, pp. 403–432.

    Article  CAS  Google Scholar 

  2. Mergaert, J. and Swings, J., Biodiversity of Microorganisms That Degrade Bacterial and Synthetic Polyesters, J. Ind. Microbiol., 1996, vol. 17, pp. 463–469.

    Article  CAS  Google Scholar 

  3. Suyama, T., Tokiwa, Y., Ouichanpagdee, P., Kanagawa, T., and Kamagata, Y., Phylogenetic Affiliation of Soil Bacteria That Degrade Aliphatic Polyesters Available Commercially as Biodegradable Plastics, Appl. Environ. Microbiol., 1998, vol. 64, pp. 5008–5011.

    PubMed  CAS  Google Scholar 

  4. Takaku, H., Kimoto, A., Kodaira, S., Nashimoto, M., and Takagi, M., Isolation of a Gram-Positive Poly(3-Hydroxybutyrate) (PHB)-Degrading Bacterium from Compost, and Cloning and Characterization of a Gene Encoding PHB Depolymerase of Bacillus megaterium N-18-25-9, FEMS Microbiol. Letts., 2006, vol. 264, pp. 152–159.

    Article  CAS  Google Scholar 

  5. Kasuya, K.I., Inoue, Y., Tanaka, T., Akehata, T., Iwata, T., Fukui, T., and Doi, Y., Biochemical and Molecular Characterization of the Polyhydroxybutyrate Depolymerase of Comamonas acidovorans YM1609, Isolated from Freshwater, Appl. Environ. Microbiol., 1997, vol. 63, pp. 4844–4852.

    PubMed  CAS  Google Scholar 

  6. Volova, T.G., Gladyshev, M.I., Trusova, M.Yu., and Zhila, N.O., Degradation of Polyhydroxyalkanoates and the Composition of Microbial Destructors under Natural Conditions, Mikrobiologiya, 2006, vol. 80, no. 5, pp. 682–688 [Microbiology (Engl. Transl.), vol. 80, no. 5, pp. 593–598].

    Google Scholar 

  7. Volova, T.G., Gladyshev, M.I., Trusova, M.Y., and Zhila, N.O., Degradation of Polyhydroxyalkanoates in Eutrophic Reservoir, Polymer Degradation and Stability, 2007, vol. 92, pp. 580–586.

    Article  CAS  Google Scholar 

  8. Voinova, O.N., Kozhevnikova, N.A., Gladyshev, M.I., and Volova, T.G., Bioplastic Degradation in Natural Reservoirs Differing in Ecological Parameters, Dokl. Akad. Nauk, 2007, vol. 417, no. 1, pp. 130–132 [Doklady. Biol. Sci. (Engl. Transl.), vol. 417, no. 1, pp. 426–428].

    Google Scholar 

  9. Voinova, O.N., Gladyshev, M.I., and Volova, T.G., Comparative Study of PHA Degradation in Natural Reservoirs Having Various Types of Ecosystems, Macromol. Symposia, 2008, vol. 269, pp. 34–37.

    Article  CAS  Google Scholar 

  10. Kasuya, K., Mitomo, H., Nakahara, M., Akiba, A., Kudo, T., and Doi, Y., Identification of a Marine Benthic P(3HB)-Degrading Bacterium Isolate and Characterization of Its P(3HB) Depolymerase, Biomacromol., 2000, vol. 1, pp. 194–201.

    Article  CAS  Google Scholar 

  11. Ghanem, N.B., Mabrouk, M.E., Sabry, S.A., and El-Badan, D.E., Degradation of Polyesters by a Novel Marine Nocardiopsis aegyptia sp. nov.: Application of Plackett-Burman Experimental Design for the Improvement of PHB Depolymerase Activity, J. Gen. Appl. Microbiol., 2005, vol. 51, pp. 151–158.

    Article  PubMed  CAS  Google Scholar 

  12. Rutkowska, M., Krasowska, K., Heimowska, A., Adamus, G., Sobota, M., Musió, M., Janeczek, H., Sikorska, W., Krzan, A., Žagar, E., and Kowalczuk, M., Environmental Degradation of Blends of Atactic Poly[(R,S)-3-Hydroxybutyrate] with Natural PHBV in Baltic Sea Water and Compost with Activated Sludge, J. Polym. Environ, 2008, vol. 16, pp. 183–191.

    Article  CAS  Google Scholar 

  13. Doi, Y., Kanesawa, Y., Tanahashi, N., and Kumagai, Y., Biodegradation of Microbial Polyesters in the Marine Environment, Polym. Degrad. Stub., 1992, vol. 36, pp. 173–177.

    Article  CAS  Google Scholar 

  14. Imam, S.H., Gordon, S.H., Shorgen, R.L., Toseson, T.R., Govind, N.S., and Greene, R.V., Degradation of Starch-Poly(Beta-Hydroxybutyrate-co-Beta-Hydroxyvalerate) Bioplastic in Tropical Coastal Waters, Appl. Environ. Microbiol., 1999, vol. 65, pp. 431–437.

    PubMed  CAS  Google Scholar 

  15. Leathers, T.D., Govind, N.S., and Greene, R.V., Biodegradation of Poly 3HB-co-3HV by a Tropical Marine Bacterium Pseudoalteromonas sp. NRRL B-30083, J. Polym. Environ., 2000, vol. 8, pp. 119–124.

    Article  CAS  Google Scholar 

  16. Kita, K., Mashiba, S., Nagita, M., Ishimaru, K., Okamoto, K., Yanase, H., and Kato, N., Cloning of Poly(3-Hydroxybutyrate) Depolymerase from a Marine Bacterium, Alcaligenes faecalis AE122, and Characterization of Its Gene Product, Biochim. Biophys. Acta, 1997, vol. 1352, pp. 113–122.

    PubMed  CAS  Google Scholar 

  17. Mabrouk, M.M. and Sabry, S.A., Degradation of Poly (3-Hydroxybutyrate) and Its Copolymer Poly (3-Hydroxybutyrate-co-3-Hydroxyvalerate) by a Marine Streptomyces sp. SNG9, Microbiol. Res, 2001, vol. 156, pp. 323–335.

    Article  PubMed  CAS  Google Scholar 

  18. Volova, T.G. and Kalacheva, G.S., The Synthesis of Hydroxybutyrate and Hydroxyvalerate Copolymers by the Bacterium Ralstonia eutropha, Mikrobiologiya, 2005, vol. 74, no. 1, pp. 63–69 [Microbiology (Engl. Transl.), vol. 74, no. 1, pp. 54–59].

    CAS  Google Scholar 

  19. Netrusov, A.I., Egorova, M.A., and Zakharchuk, L.M., Praktikum po mikrobiologii (Practical Course in Microbiology), Moscow: Akademiya, 2005.

    Google Scholar 

  20. Bergey’s Manual of Systematic Bacteriology, vol. 2: The Proteobacteria, 2nd ed., Garrity, G.M., Ed., Springer, 2005.

  21. The Prokaryotes. A handbook on the biology of bacteria, vols. 1–7, 3rd ed., Dworkin, M. et al., Eds., Springer, 2006.

  22. Mergaert, J., Webb, A., Anderson, C., Wouters, A., and Swings, J., Microbial Degradation of Poly(3-Hydroxybutyrate) and Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate) in Soils, Appl. Environ. Microbiol., 1993, vol. 59, pp. 3233–3238.

    PubMed  CAS  Google Scholar 

  23. Van de Peer, Y. and De Wachter, R., TREECON: a Software Package for the Construction and Drawing of Evolutionary Trees, Comput. Applic. Biosci., 1993, vol. 9, pp. 177–182.

    Google Scholar 

  24. Volova, T.G., Belyaeva, O.G., Plotnikov, V.F., and Puzyr’, A.P., Studies of Biodegradation of Microbial Polyhydroxyalkanoates, Prikl. Biokhim. Mikrobiol., 1998, vol. 34, no. 5, pp. 539–543 [Appl. Biochem. Microbiol. (Engl. Transl.), vol. 34, no. 5, pp. 488–492].

    CAS  Google Scholar 

  25. Abe, H., Marsubara, I., and Doi, Y., Physical Properties and Enzymatic Degradability of Polymer Blends of Bacterial Poly[(R)-3-Hydroxybutyrate] and Poly[(R,S)-3-Hydroxybutyrate] Stereoisomers, Macromol., 1995, vol. 28, pp. 844–853.

    Article  CAS  Google Scholar 

  26. Beleneva, I.A., Zhukova, N.V., Lan, Kh., and Tran, D.Kh., Taxonomic Composition of Bacteria Associated with Cultivated Mollusks Crassostrea lugubris and Perna viridis and with the Water of the Gulf of Nha Trang Lagoon, Vietnam, Mikrobiologiya, 2007, vol. 76, no. 2, pp. 253–262 [Microbiology (Engl. Transl.), vol. 76, no. 2, pp. 220–228].

    CAS  Google Scholar 

  27. Beleneva, I.A. and Zhukova, N.V., Seasonal Dynamics of Cell Numbers and Biodiversity of Marine Heterotrophic Bacteria Inhabiting Invertebrates and Water Ecosystems of the Peter the Great Bay, Sea of Japan, Mikrobiologiya, 2009, vol. 78, no. 3, pp. 414–420 [Microbiology (Engl. Transl.), vol. 78, no. 3, pp. 369–375].

    CAS  Google Scholar 

  28. Stackebrandt, E. and Goebel, B.M., Taxonomic Note: a Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology, Int. J. Syst. Bacteriol., 1994, vol. 44, pp. 846–849.

    Article  CAS  Google Scholar 

  29. Ludwig, W., Strunk, O., Klugbauer, S., Weizenegger, M., Neumaier, J., Bachleither, M., and Schleifer, K.H., Bacterial Phylogeny Based on Comparative Sequence Analysis, Electrophoresis, 1998, vol. 19, pp. 554–568.

    Article  PubMed  CAS  Google Scholar 

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Correspondence to T. G. Volova.

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Original Russian Text © T.G. Volova, A.N. Boyandin, A.D. Vasil’ev, V. A. Karpov, I. V. Kozhevnikov, S.V. Prudnikova, V.P. Rudnev, Büi Bá Xuån, Vũ Vi\( \mathop e\limits^ \circ \)t Dũng, I.I. Gitel’zon, 2011, published in Mikrobiologiya, 2011, Vol. 80, No. 2, pp. 266–274.

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Volova, T.G., Boyandin, A.N., Vasil’ev, A.D. et al. Biodegradation of polyhydroxyalkanoates (PHAs) in the South China Sea and identification of PHA-degrading bacteria. Microbiology 80, 252–260 (2011). https://doi.org/10.1134/S0026261711020184

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