Abstract
Strain BBS, the purple sulfur bacterium assigned initially to the species Thiocapsa roseopersicina, is the best studied representative of this species. However, no molecular phylogenetic analysis has been performed to confirm its systematic position. Based on the results of analysis of the sequences of 16S rRNA, cbbL, and nifH genes, DNA-DNA hybridization with the T. roseopersicina type strain, and comparative analysis of the phenotypic characteristics of various species belonging to the genus Thiocapsa, we suggest that strain BBS should be assigned to a new species of the genus Thiocapsa, Thiocapsa bogorovii sp. nov.
Similar content being viewed by others
References
Imhoff, J.F., Reassignment of the genus Ectothiorhodospira Pelsh 1936 to an New Family Ectothiorhodospiraceae fm. no., and Emended Description of the Chromatiaceae Bavendamm 1924, Int. J. Syst. Bacteriol., 1984, vol. 34, pp. 338–339.
Imhoff, J.F., Suling, J., and Petri, R., Phylogenetic relationships among the Chromatiaceae, Their Taxonomic Reclassification and Description of the New Genera Allochromatium, Halochromatium, Isochromatium, Marichromatium, Thiococcus, Thiohalocapsa and Thermochromatium, Int. J. Syst. Bacteriol., 1998, vol. 48, no. 4, pp. 1129–1143.
Guyoneaud, R., Suling, J., Petri, R., Matheron, R., Caumette, P., Pfennig, N., and Imhoff, J.F., Taxonomic Rearrangements of the Genera Thiocapsa and Amoebobacter on the basis of 16S rDNA Sequence Analysis, and Description of Thiolamprovum gen. nov., Int. J. Syst. Bacteriol., 1998, vol. 3484, pp. 957–964.
Kondratieva, E.N., Zhukov, V.G., Ivanovsky, R.N., Petushkova, U.P., and Monosov, E.Z., The Capacity of Phototrophic Sulfur Bacterium Thiocapsa roseopersicina for Chemosynthesis, Arch. Microbiol., 2008, vol. 108, pp. 287–292.
Petushkova, Yu.P. and Ivanovskii, R.N., Sulfite Oxidation by Thiocapsa roseopersicina, Mikrobiologiya, 1976, vol. 45, pp. 592–597.
Petushkova, Yu.P. and Ivanovskii, R.N., Enzymes Involved in Thiosulfate Metabolism of Thiocapsa roseopersicina under Various Conditions of Growth, Mikrobiologiya, 1976, vol. 45, pp. 960–965.
Kondratieva, E.N, Ivanovsky, R.N., and Krasilnikova, E.N, Light and Dark Metabolism in Purple Sulfur Bacteria, in Soviet Science Review, Skulachev, V.P., Ed., New York: IPC Sci. Technol., 1981, pp. 325–364.
Gogotov, I.N., Hydrogenases of Phototrophic Microorganisms, Biochimie, 1986, vol. 68, pp. 181–187.
Bogorov, L.V., Characterization of Thiocapsa roseopersicina Strain BBS Isolated from the White Sea Estuary, Mikrobiologiya, 1974, vol. 43, pp. 326–332.
Tabita, F.R, The Biochemistry and Metabolic Regulation of Carbon Metabolism and CO2 Fixation in Purple Bacteria, in Anoxygenic Photosynthetic Bacteria, Blankenship, R.E., Madigan, M., and Bauer, C.E., Eds., Dordrecht: Kluwer Academic, pp. 885–914.
Purohit, K. and McFadden, B.A., Ribulose 1,5-Bisphosphate Carboxylase and Oxygenase from Thiocapsa roseopersicina: Activation and Catalysis, Arch. Biochem. Biophys., 1979, vol. 194, pp. 101–106.
Zhukov, V.G., Ribulose 1,5-Bisphosphate Carboxylase Formation by Thiocapsa roseopersicina under Different Growth Conditions, Mikrobiologiya, 1976, vol. 45, pp. 915–917.
Kobayashi, H., Viale, A.M., Takabe, T., Akazawa, T., Wada, K., Shinozaki, K., Kobayashi, K., and Sugiura, M., Sequence and Expression of Genes Encoding the Large and Small Subunits of Ribulose 1,5-bisphosphate Carboxylase/Oxygenase from Chromatium vinosum, Gene, 1991, vol. 97, pp. 55–62.
Overmann, J. and Pfennig, N., Continuous Chemotrophic Growth and Respiration of Chromatiaceae Species at Low Oxygen Concentrations, Arch. Microbiol., 1992, vol. 158, pp. 59–67.
De Wit, R. and van Gemerden, H., Chemolithotrophic Growth of the Phototrophic Sulfur Bacterium Thiocapsa roseopersicina, FEMS Microbiol. Lett., 1987, vol. 45, pp. 117–126.
Kampf, C. and Pfennig, N., Capacity of Chromatiaceae for Chemolithotrophic Growth. Specific Respiration Rates of Thiocystis violacea and Chromatium vinosum, Arch. Microbiol., 1980, vol. 127, pp. 125–135.
Madigan, M.T, Microbiology of Nitrogen Fixation by Anoxygenic Photosynthetic Bacteria, in Anoxygenic Photosynthetic Bacteria, Blankenship, R.E., Madigan, M.T., and Bauer, C.E., Eds., Dordrecht: Kluwer Academic, 1995, pp. 915–928.
Zehr, J.P., Mellon, M.T., and Zani, S., New Nitrogen-Fixing Microorganisms Detected in Oligotrophic Oceans by Amplification of Nitrogenase (nifH) Genes, Appl. Environ. Microbiol., 1998, vol. 64, pp. 3444–3450.
Moisander, P.H., Morrison, A.E., Ward, B.B., Jenkins, B.D., and Zehr, J.P., Spatial-Temporal Variability in Diazotroph Assemblages in Chesapeake Bay Using an Oligonucleotide nifH Microarray, Environ. Microbiol., 2007, vol. 9, pp. 1823–1835.
Tourova, T.P., Spiridonova, E.M., Slobodova, N.V., Boulygina, E.S., Keppen, O.I., Kuznetsov, B.B., and Ivanovsky, R.N., Phylogeny of Anoxygenic Filamentous Phototrophic Bacteria of the Family Oscillochloridaceae as Inferred from Comparative Analyses of the rrs, cbbL, and nifH Genes, Mikrobiologiya, 2006, vol. 75, no. 2, pp. 235–244 [Microbiology (Engl. Transl.), vol. 75, no. 2, pp. 192–200].
Marmur, J., A procedure for the Isolation of Deoxyribonucleic Acid from Microorganisms, J. Mol. Biol., 1961, pp. 208–218.
De Ley, J., Cattoir, H., and Reynaerts, A., The Quantitative Measurement of DNA Hybridization from Renaturation Rates, Eur. J. Biochem., 1970, vol. 12, pp. 133–142.
Lunina, O.N., Gorlenko, V.M., Solov’eva, O.A., Akimov, V.N., Rusanov, I.I., and Pimenov, N.V., Seasonal Changes in the Structure of the Anoxygenic Phototrophic Bacterial Community in Lake Mogilnoe, a Relict Lake on Kil’din Island in the Barents Sea, Mikrobiologiya, 2005, vol. 74, no. 5, pp. 677–686 [Microbiology (Engl. Transl.), vol. 74, no. 5, pp. 588–596].
Stackebrandt, E. and Ebers, J., Taxonomic Parameters Revisited: Tarnished Gold Standards, Microbiol. Today, 2006, vol. 4, pp. 152–155.
Spiridonova, E.M., Berg, I.A., Kolganova, T.V., Ivanovsky, R.N., Kuznetsov, B.B., and Tourova, T.P., An Oligonucleotide Primer System for Amplification of the Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase Genes of Bacteria of Various Taxonomic Groups, Mikrobiologiya, 2004, vol. 73, no. 3, pp. 377–387 [Microbiology (Engl. Transl.), vol. 73, no. 3, pp. 316–325].
Viale, A., Kobayashi, H., and Akazawa, T., Expressed Genes for Plant-Type Ribulose 1.5-Bisphosphate Carboxylase/Oxygenase in the Photosynthetic Bacterium Chromatium vinosum, Which Possesses Two Complete Sets of the Genes, J. Bacteriol., 1989, vol. 171, pp. 2391–2400
Tourova, T.P., Spiridonova, E.M., Berg, I.A., Slobodova, N.V., Slobodova, N.V., and Sorokin, D.Y., Phylogeny and Evolution of the Family Ectothiorhodospiraceae Based on Comparison of 16S rRNA, cbbL and nifH Gene Sequences, Int. J. Syst. Evol. Microbiol., 2007, vol. 57, pp. 2387–2398.
Caumette, P., Guyoneaud, R., Imhoff, J.F., Suling, J., and Gorlenko, V.M., Thiocapsa marina sp. nov., a Novel, Okenone-Containing, Purple Sulfur Bacterium Isolated from Brackish Coastal and Marine Environments, Int. J. Syst. Evol. Microbiol., 2004, vol. 54, pp. 1031–1036.
Puchkova, N.N., Imhoff, J.F., and Gorlenko, V.M., Thiocapsa litoralis sp. nov., a New Purple Sulfur Bacterium from Microbial Mats from the White Sea, Int. J. Syst. Evol. Microbiol., 2000, vol. 50, pp. 1441–1447.
Author information
Authors and Affiliations
Corresponding author
Additional information
Original Russian Text © T.P. Tourova, O.I. Keppen, O.L. Kovaleva, N.V. Slobodova, I.A. Berg, R.N. Ivanovsky, 2009, published in Mikrobiologiya, 2009, Vol. 78, No. 3, pp. 381–392.
Rights and permissions
About this article
Cite this article
Tourova, T.P., Keppen, O.I., Kovaleva, O.L. et al. Phylogenetic characterization of the purple sulfur bacterium Thiocapsa sp. BBS by analysis of the 16S rRNA, cbbL, and nifH genes and its description as Thiocapsa bogorovii sp. nov., a new species. Microbiology 78, 339–349 (2009). https://doi.org/10.1134/S0026261709030126
Received:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S0026261709030126