Abstract
Electron Spin Echo Envelope Modulation (ESEEM) spectroscopy in conjunction with biochemical techniques of site-directed spin labeling and deuterium substitution in molecules or parts of molecules can be used to gain insights into supramolecular structure of biological membranes. The review covers the applications of this approach to study water penetration into the hydrophobic part of model phospholipid membranes and into the ion channels of biological membranes, to determine the localization and orientation of peptide antibiotics in membranes, and to investigate the conformations of enzymes and membrane proteins.
Similar content being viewed by others
References
W. C. Wimley, Am. Chem. Soc. Chem. Biol., 5, No. 10, 905 (2010).
C. D. Fjell, J. A. Hiss, R. E. W. Hancock, and G. Schneider, Nature Reviews Drug Discovery, 11, No. 1, 37 (2012).
L. T. Nguyen, E. F. Haney, and H. J. Vogel, Trends in Biotechnology, 29, No. 9, 464 (2011).
W. C. Wimley and K. J. Hristova, Membr. Biol., 239, Nos. 1/2, 27 (2011).
R. Kausik and S. Han, Phys. Chem. Chem. Phys., 13, No. 17, 7732 (2011).
T. R. Lucas, B. A. Bauer, J. E. Davis, and S. Patel, J. Comput. Chem., 33, No. 2, 141 (2012).
H. Saito and W. Shinoda, J. Phys. Chem., 115, No. 51, 15241 (2011).
D. Marsh, Appl. Magn. Res., 37, No. 1, 435 (2009).
M. Shintani, K. Yoshida, S. Sakuraba, M. Nakahara, and N. Matubayasi, J. Phys. Chem. B, 115, No. 29, 9106 (2011).
A. McDermott, Annual Rev. Biophys., 38, No. 1, 385 (2009).
R. M. Bill, P. J. F. Henderson, S. Iwata, E. R. S. Kunji, H. Michel, R. Neutze, S. Newstead, B. Poolman, C. G. Tate, and H. Vogel, Nature Biotechnology, 29, No. 4, 335 (2011).
G. Pabst, N. Kučerka, M.-P. Nieh, M. C. Rheinstödter, and J. Katsaras, Chem. Phys. Lipids., 163, No. 6, 460 (2010).
F. Khalili-Araghi, J. Gumbart, P.-C. Wen, M. Sotomayor, E. Tajkhorshid, and K. Schulten, Current Opinion Struct. Biol., 19, No. 2, 128 (2009).
R. O. Dror, R. M. Dirks, J. P. Grossman, H. Xu, and D. E. Shaw, Annual Rev. Biophys., 41, No. 1, 429 (2012).
W. L. Hubbell, A. Cross, R. Langen, and M. A. Lietzov, Current Opinion Struct. Biol., 8, 649 (1998).
G. E. Fanucci and D. S. Cafiso, Current Opinion Struct. Biol., 16, 644 (2006).
A. L. Buchachenko and A. M. Vasserman, Stable Radicals [in Russian], Khimiya, Moscow (1973).
L. B. Volodarsky, I. A. Grigoryev, and S. A. Dikanov, et al., Imidazoline Nitroxide Radicals [in Russian], Nauka, Novosibirsk (1988).
S. A, Dzuba Usp. Khim., 76, 752 (2007).
K. M. Salikhov, A. G. Semenov, and Yu. D. Tsvetkov, Electron Spin Echoes and Their Applications [in Russian], Nauka, Novosibirsk (1976).
A. Schweiger and G. Jeschke, Principles of Pulsed Electron Paramagnetic Resonance, University Press, Oxford, UK (2001).
S. A. Dikanov and Y. D. Tsvetkov, Electron Spin-Echo Envelope Modulation (ESEEM) Spectroscopy, CRC Press: Boca Raton, USA (1992).
E. S. Salnikov, D. A. Erilov, A. D. Milov, Yu. D. Tsvetkov, C. Peggion, F. Formaggio, C. Toniolo, J. Raap, and S. A. Dzuba, Biophys. J., 91, 1532 (2006).
A. D. Milov, R. I. Samoilova, A. A. Shubin, Yu. A. Grishin, and S. A. Dzuba, Appl. Magn. Res., 35, 73 (2008).
K. Aman, E. Lindahl, O. Edholm, P. Hakansson, and P.-O. Westlund, Biophys. J., 84, 102 (2003).
J. Fitter, R. E. Lechner, and N. A. Dencher, J. Phys. Chem. B, 103, 8036 (1999).
J. Milhaud, Biochim. Biophys. Acta, Biomembranes, 19, 1663 (2004).
S. Y. Bhide and M. L. Berkowitz, J. Chem. Phys., 123, 224702 (2005).
T. Róg, K. Murzyn, J. Milhaud, M. Karttunen, and M. Pasenkiewicz-Gierula, J. Phys. Chem. B, 113, No. 8, 2378 (2009).
W. K. Subczynski, A. Wisniewska, J. J. Yin, J. S. Hyde, and A. Kusumi, BioChem., 33, 7670 (1994).
D. Marsh, Proc. Natl. Acad. Sci. USA, 98, 7777 (2001).
D. Kurad, G. Jeschke, and D. Marsh, Biophys. J., 85, 1025 (2003).
E. Conte, F. M. Megli, H. Khandelia, G. Jeschke, and E. Bordignon, Biochim. Biophys. Acta Biomembranes, 1828, No. 2, 510 (2012).
T. Hiff and L. Kevan, J. Phys. Chem., 93, 1572 (1989).
R. Bartucci, R. Guzzi, D. Marsh, and L. Sportelli, Biophys. J., 84, 1025 (2003).
V. Noethig-Laslo, P. Cevc, D. Arcon, and M. Sentjurc, Origins Life Evol. Biosphere, 34, 237 (2003).
V. Noethig-Laslo, P. Cevc, D. Arcon, and M. Sentjurc, Appl. Magn. Res., 27, 303 (2004).
D. A. Erilov, R. Bartucci, R. Guzzi, A. A. Shubin, A. G. Maryasov, D. Marsh, S. A. Dzuba, and L. Sportelli, J. Phys. Chem. B, 109, 12003 (2005).
V. N. Syryamina, M. De Zotti, C. Peggion, F. Formaggio, C. Toniolo, J. Raap, and S. A. Dzuba, J. Phys. Chem. B, 116, 5653 (2012).
R. Carmieli, N. Papo, H. Zimmermann, A. Potapov, Y. Shai, and D. Goldfarb, BioPhys. J., 90, No. 2, 492 (2006).
J. A. Cieslak, P. J. Focia, and A. Gross, BioChem., 49, No. 7, 1486 (2010).
V. V. Kurshev and L. Kevan, J. Phys. Chem., 99, 10616 (1995).
G. Ehrenstein and H. Lecar, Quart. Rev., Biophys., 10, 1 (1977).
Z. Oren and Y. Shai, Biopolymers, 47, 451 (1998).
E. Gazit, A. Boman, H. G. Boman, and Y. Shai, Biochem., 34, 11479 (1995).
E. Benedetti, A. Bavoso, B. Di Blasio, V. Pavone, C. Pedone, C. Toniolo, and G. M. Bonora, Proc. Natl. Acad. Sci. USA, 79, 7951 (1982).
R. F. Epand, R. M. Epand, V. Monaco, S. Stoia, F. Formaggio, M. Crisma, and C. Toniolo, Eur. J. Biochem., 266, 1021 (1999).
R. D. Kaiser and E. London, Biochim. Biophys. Acta, 1375, 13 (1998).
C. Mazzuca, L. Stella, M. Venanzi, F. Formaggio, C. Toniolo, and B. Pispisa, Biophys. J., 88, 3411 (2005).
R. D. Kaiser and E. London, Biochim. Biophys. Acta, 1375, 13 (1998).
B. Dzikovski, D. Tipikin, and J. Freed, J. Phys. Chem. B, 116, No. 23, 6694 (2012).
V. N. Syryamina, N. R. Isaev, M. De Zotti, C. Peggion, F. Formaggio, C. Toniolo, J. Raap, and S. A. Dzuba, Biopolymers, 96, 497 (2011).
V. N. Syryamina, N. P. Isaev, C. Peggion, F. Formaggio, C. Toniolo, J. Raap, and S. A. Dzuba, J. Phys. Chem. B, 114, 12277 (2010).
M. Crisma, V. Monako, F. Formaggio, C. Toniolo, C. George, and J.-L. Flippen-Anderson, Lett. Pept. Sci., 4, 213 (1997).
V. Monaco, F. Formaggio, M. Crisma, C. Toniolo, P. Hanson, and G. L. Millhauser, Biopolymers, 50, 239 (1999).
R. Bartucci, R. Guzzi, L. Sportelli, and D. Marsh, BioPhys. J., 96, No. 3, 997 (2009).
E. S. Salnikov, M. De Zotti, F. Formaggio, X. Li, C. Toniolo, J. D. J. O’Neil, J. Raap, S. A, Dzuba, and B. Bechinger, J. Phys. Chem. B, 113, 3034 (2009).
A. D. Milov, R. I. Samoilova, Y. D. Tsvetkov, M. De Zotti, F. Formaggio, C. Toniolo, and Handgraaf J.-W. Raap, BioPhys. J., 96, No. 8, 3197 (2009).
C. Peggion, I. Coin, and C. Toniolo, Biopolymers, 76, 485 (2004).
A. D. Milov, R. I. Samoilova, A. A. Shubin, E. Y. Gorbunova, L. G. Mustaeva, T. V. Ovchinnikova, J. Raap, and Y. D. Tsvetkov, Appl. Magn. Res., 38, No. 1, 75 (2010).
M. Gordon-Grossman, Y. Gofman, H. Zimmermann, V. Frydman, Y. Shai, N. Ben-Tal, and D. Goldfarb, J. Phys. Chem. B, 113, No. 38, 12687 (2009).
M. Gordon-Grossman, H. Zimmermann, S. G. Wolf, Y. Shai, and D. Goldfarb, J. Phys. Chem. B, 116, No. 1, 179 (2012).
R. Guzzi, R. Bartucci, L. Sportelli, M. Esmann, and D. Marsh, BioChem., 48, No. 35, 8343 (2009).
R. Guzzi, M. Babavali, R. Bartucci, L. Sportelli, M. Esmann, and D. Marsh, Biochim. Biophys. Acta, Biomembranes, 1808, No. 6, 1618 (2011).
A. Volkov, C. Dockter, T. Bund, H. Paulsen, and G. Jeschke, Biophys. J., 96 No. 2, 1124 (2009).
A. Volkov, C. Dockter, Y. Polyhach, H. Paulsen, and G. Jeschke, J. Phys. Chem. Lett., 1, 663 (2010).
F. De Simone, R. Guzzi, L. Sportelli, D. Marsh, and R. Bartucci, Biochim. Biophys. Acta, 1768, 1541 (2007).
D. Kurad, G. Jeschke, and D. Marsh, Biophys. J., 86, 264 (2004).
D. Mayo, A. Zhou, I. Sahu, R. McCarrick, P. Walton, A. Ring, K. Troxel, A. Coey, J. Hawn, A.-H. Emwas, and G. A. Lorigan, Protein Science, 20. No. 7, 1100 (2011).
A. Zhou, S. Abu-Baker, I. D. Sahu, L. Liu, R. M. McCarrick, C. Dabney-Smith, and G. A. Lorigan, BioChem., 51, No. 38, 7417 (2012).
L. Liu, I. D. Sahu, D. J. Mayo, R. M. McCarrick, K. Troxel, A. Zhou, E. Shockley, and G. A. Lorigan, J. Phys. Chem. B, 116. No. 36, 11041 (2012).
Author information
Authors and Affiliations
Corresponding author
Additional information
Original Russian Text Copyright © 2013 by S. A. Dzuba
__________
Novosibirsk State University. Translated from Zhurnal Strukturnoi Khimii, Vol. 54, Supplement 1, pp. S5–S19, 2013.
Rights and permissions
About this article
Cite this article
Dzuba, S.A. Structural studies of biological membranes using ESEEM spectroscopy of spin labels and deuterium substitution. J Struct Chem 54 (Suppl 1), 1–15 (2013). https://doi.org/10.1134/S0022476613070019
Received:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S0022476613070019