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Correlation between the contexts of the translation initiation signal and the N-terminal sequence of arabidopsis, yeast, mouse, and human proteins

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Abstract

Computer analysis was performed to check for correlation between the contextual characteristics of mRNA 5′-terminal regions with the translation initiation site and the N-terminal amino acid sequences in proteins of eukaryotic organisms belonging to various taxa; these results may be significant for the function of translation initiation signal.

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Abbreviations

PCS:

protein-coding sequence

AAS:

amino acid sequence

G3, C3, and U3 codons:

those containing guanine, cytidine, and uridine at the third position, respectively

References

  1. M. Lukaszewicz, M. Feuermann, B. Jerouville, et al., Plant Science 154, 89 (2000).

    Article  Google Scholar 

  2. M. Kozak, Gene 361, 13 (2005).

    Article  Google Scholar 

  3. A. Pisarev, V. Kolupaeva, V. Pisareva, et al., Genes and Dev. 20, 624 (2006).

    Article  Google Scholar 

  4. M. Kozak, Cell 44, 283 (1986).

    Article  Google Scholar 

  5. R. Hamilton, C. K. Watanabe, and H. A. de Boer, Nucleic Acids Res. 15, 3581 (1987).

    Article  Google Scholar 

  6. C. P. Joshi, H. Zhou, X. Huang, and V. L. Chiang, Plant. Mol. Biol. 35, 993 (1997).

    Article  Google Scholar 

  7. D. R. Cavener and S. C. Ray, Nucleic Acids Res. 19, 3185 (1991).

    Article  Google Scholar 

  8. M. Kozak, EMBO J. 16, 2482 (1997).

    Article  Google Scholar 

  9. H. A. Lutcke, K. C. Chow, F. S. Mickel, et al., EMBO J. 6, 43 (1987).

    Google Scholar 

  10. R. Boeck and D. D. Kolakofsky, EMBO J. 13, 3608 (1994).

    Google Scholar 

  11. I. N. Berezovsky, G. T. Kilosanidse, V. G. Tumanyan, and L. L. Kisselev, Protein Engineering 12(1), 23 (1999).

    Article  Google Scholar 

  12. Y. Niimura, M. Terabe, T. Gojobori, and K. Miura, Nucleic Acids Res. 31(17), 5195 (2003).

    Article  Google Scholar 

  13. A. Tats, M. Remm, and T. Tenson, BMC Genomics 7, 28 (2006).

    Article  Google Scholar 

  14. S. V. Sawant, K. Kiran, P. K. Singh, and R. Tuli, Plant Physiol. 126, 1630 (2001).

    Article  Google Scholar 

  15. A. Varshavsky, Proc. Natl. Acad. Sci. USA 93, 12142 (1996).

    Article  ADS  Google Scholar 

  16. H. P. Driessen, W. W. de Jong, G. I. Tesser, and H. Bloemendal, CRC Crit. Rev. Biochem. 18, 281 (1985).

    Article  Google Scholar 

  17. J. W. Tobias, T. E. Shrader, G. Rocap, and A. Varshavsky, Science 254, 1374 (1991).

    Article  ADS  Google Scholar 

  18. H. Musto, S. Cruveiller, G. D’Onofrio, et al., Mol. Biol. Evol. 18, 1703 (2001).

    Google Scholar 

  19. G. Gatto and J. Berg, Genome Res. 13(4), 617 (2003).

    Article  Google Scholar 

  20. G. Griilo, M. Attimonelli, S. Liuni, and G. Pesole, Comp. Appl. Biosci. 12, 1 (1996).

    Google Scholar 

  21. R. Percudani and S. Ottonello, Mol. Biol. Evol. 16, 1752 (1999).

    Google Scholar 

  22. Y. Nakamura, T. Gojobori, and T. Ikemura, Nucleic Acids Res. 28, 292 (2000).

    Article  Google Scholar 

  23. F. A. Kolpakov and V. N. Babenko, Molek. Biol. 31, 647 (1997).

    Google Scholar 

  24. G. Pesole, S. Liuni, G. Grillo, and C. Saccone, Gene 205, 95 (1997).

    Article  Google Scholar 

  25. G. Gutierrez, L. Marquez, and A. Marin, Nucleic Acids Res. 24(13), 2525 (1996).

    Article  Google Scholar 

  26. Y. M. Zalucki and M. P. Jennings, Biochem. Biophys. Res. Comm. 355, 143 (2007).

    Article  Google Scholar 

  27. A. V. Kochetov, M. P. Ponomarenko, A. S. Frolov, et al., Bioinformatics 15, 704 (1999).

    Article  Google Scholar 

  28. Y. Wang, J. Liu, T. Zhao, and Q. Ji, Bioinformatics 19(15), 1972 (2003).

    Article  Google Scholar 

  29. A. V. Kochetov, Bioinformatics 21, 837 (2005).

    Article  Google Scholar 

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Authors and Affiliations

  1. Institute of Cytology and Genetics, Siberian Branch, Russian Academy of Sciences, Novosibirsk, 630090, Russia

    O. A. Volkova, S. E. Titov & A. V. Kochetov

  2. Novosibirsk State University, Novosibirsk, 630090, Russia

    A. V. Kochetov

Authors
  1. O. A. Volkova
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  2. S. E. Titov
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  3. A. V. Kochetov
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Correspondence to O. A. Volkova.

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Volkova, O.A., Titov, S.E. & Kochetov, A.V. Correlation between the contexts of the translation initiation signal and the N-terminal sequence of arabidopsis, yeast, mouse, and human proteins. BIOPHYSICS 51 (Suppl 1), 11–17 (2006). https://doi.org/10.1134/S0006350906070037

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  • DOI: https://doi.org/10.1134/S0006350906070037

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