Skip to main content
Log in

Molecular differentiation of Mycosphaerella species from Musa

  • Published:
Australasian Plant Pathology Aims and scope Submit manuscript

Abstract

The three Mycosphaerella species M. fijiensis, M. musicola and M. eumusae, that infect bananas, cause major problems to the exploitation of this crop around the world. Their differentiation is crucial to the understanding of their epidemiology and control. M. eumusae was only recognised as a species in 2000, before which the other two were known to occur on Musa. It is now very commonly present in several countries. Bananas being a major source of revenue for low-income countries, they remain an important export commodity for these developing countries. The genetic relatedness of these three species was investigated through sequence analysis of conserved genes, actin, tubulin and histone 3. All confirmed M. eumusae as being different from the other two. Previous data relied on ribosomal sequences. Primers developed by Johanson and Jeger (1993) and which are specific for M. musicola and M. fijiensis, were tested on all three species. M. eumusae had an amplification profile which allowed its differentiation from the other two. The amplified fragments from the three species were sequenced and sequence polymorphism was used for designing new primers. Two new sets of primers, EuY1/EuY5 and EuY2/EuY5, reported here produced profiles that consistently gave the same bands which were specific for the three species and can be used in conventional PCR for their differentiation.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Arzanlou M, Abeln ECA, Kema GHJ, Waalwijk C, Carlier J, De Vries I, Guzman M, Crous PW (2007) Molecular diagnostics for the Sigatoka disease complex of banana. Phytopathology 97, 1112–1118. doi: 10.1094/PHYTO-97-9-1112

    Article  CAS  PubMed  Google Scholar 

  • Ayliffe M, Dodds P, Lawrence G (2001) Characterisation of beta-tubulin from Melamspora lini and comparison of fungal beta-tubulin genes. Mycological Research 105, 818–826.

    Article  CAS  Google Scholar 

  • Blackwell M, Hibbett DS, Taylor JW, Spatafora JW (2006) Research coordination networks: a phylogeny for kingdom Fungi (Deep Hypha). Mycologia 98, 829–837. doi: 10.3852/mycologia.98.6.829

    Article  PubMed  Google Scholar 

  • Carbone J, Kohn LM (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91, 553–556. doi: 10.2307/3761358

    Article  CAS  Google Scholar 

  • Carlier J, Zapater MF, Lapeyre F, Jones DR, Mourichon X (2000) Septoria leaf spot of banana: a newly discovered disease caused by Mycosphaerella eumusae (Anamorph Septoria eumusae). Phytopathology 90, 884–890. doi: 10.1094/PHYTO.2000.90.8.884

    Article  CAS  PubMed  Google Scholar 

  • Corradi N, Gerrit K, Sanders I (2004) Monophyly of beta-tubulin and H+ATPase gene variants in Glomus intraradices: consequences for molecular evolutionary studies of AM fungal genes. Fungal Genetics and Biology 41, 262–273. doi: 10.1016/j.fgb.2003.11.001

    Article  CAS  PubMed  Google Scholar 

  • Crous PW, Groenewald JZ, Risede J-M, Hywel-Jones NL (2004) Calonectria species and their Cylindrocladium anamorphs: species with sphaeropedunculate vesicles. Studies in Mycology 50, 415–429.

    Google Scholar 

  • Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard J-F, Guindon S, Lefort V, Lescot M, Claverie J-M, Gascuel O (2008) Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Research Jul 1; 36 (Web Server Issue), W465–469. Epub 2008 Apr 19. (PubMed)

    Article  CAS  PubMed  Google Scholar 

  • Glass NL, Donaldson G (1995) Development of primer sets designed for use with PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology 61, 1323–1330.

    CAS  PubMed  Google Scholar 

  • Johanson A, Jeger MJ (1993) Use of PCR for detection of Mycosphaerella fijiensis and M. musicola, the causal agents of Sigatoka leaf spots in banana and plantain. Mycological Research 97, 670–674. doi: 10.1016/ S0953-7562(09)80145-7

    Article  Google Scholar 

  • Johanson A, Templeton MD (1991) Preliminary studies of the use of PCR for random amplification of polymorphic DNA markers (RAPDs) in Mycosphaerella fijiensis and M. musicola. In ‘Proceedings of the tenth reunion meeting of ACORBAT, Villahermosa, Mexico, 2–9 November’.

  • Johanson A, Crowhurst RN, Rikkerink EH, Fullerton RA, Templeton MD (1994) The use of species-specific DNA probes for the identification of Mycosphaerella fijiensis and M. musicola, the causal agent of Sigatoka disease of banana. Plant Pathology 43, 701–707. doi: 10.1111/j.1365-3059.1994.tb01609.x

    Article  Google Scholar 

  • Johanson A, Tushemereirwe WK, Karamura EB (2000) Distribution of Sigatoka leaf spots in Uganda as determined by species-specific polymerase chain reaction (PCR). Proceedings International Symposium On Banana and Plantains. (Eds K Craenen, R Ortiz, EB Karamura, DR Vuylsteke) Acta Horticultura. 540 ISHS, pp. 319–324.

    Google Scholar 

  • Keeling P (2003) Congruent evidence from a-tubulin and b-tubulin gene phylogenies for a zygomycete origin of microsporidia. Fungal Genetics and Biology 38, 298–309. doi: 10.1016/S1087-1845(02) 00537-6

    Article  CAS  PubMed  Google Scholar 

  • Marín DH, Romero RA, Guzman M, Turner S (2003) Black Sigatoka: an increasing threat to banana cultivation. Plant Disease 87, 208–222. doi: 10.1094/PDIS.2003.87.3.208

    Article  Google Scholar 

  • O’Donnell K, Cigelnik E (1997) Two divergent intragenomic rDNA ITS 2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Molecular Phylogenetics and Evolution 7, 103–116. doi: 10.1006/mpev.1996.0376

    Article  PubMed  Google Scholar 

  • Qianhong G, Han F, Dai J, Liu H, Guan H, Yu W (2005) Rapid isolation and sequence analysis of the beta-tubulin gene from Porphyra yezoensis (Rhodophyta) Journal of Applied Phycology 17, 1–5. doi: 10.1007/ s10811-005-5950-4

    Article  Google Scholar 

  • Surridge AKJ, Viljoen A, Crous PW, Wehner FC (2003) Identification of the pathogen associated with Sigatoka disease of banana in South Africa. Australasian Plant Pathology 32, 27–31. doi: 10.1071/ AP02058

    Article  Google Scholar 

  • Zapater MF, Rakotonantoandro A, Cohen S, Carlier J (2004) Polymerase chain reaction-restriction fragment length polymorphism markers for the fungal banana pathogen Mycosphaerella fijiensis. Molecular Ecology Notes 4, 80–82. doi: 10.1046/j.1471-8286.2003.00575.x

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Y. Jaufeerally-Fakim.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Jaufeerally-Fakim, Y., Sookun, D. & Benimadhu, S. Molecular differentiation of Mycosphaerella species from Musa . Australasian Plant Pathology 38, 461–466 (2009). https://doi.org/10.1071/AP09027

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1071/AP09027

Keywords

Navigation