Skip to main content
Log in

Study of the sulfur atom as hydrogen bond acceptor in N(2)-pyridylmethyl-N′-arylthioureas

  • Published:
Journal of Chemical Crystallography Aims and scope Submit manuscript

Abstract

The hydrogen acceptor capability of the sulfur atom in the biologically relevant N-2-pyridylmethyl-N′-arilthioureas was explored. N-2-Pyridylmethyl thioreas were selected to avoid the formation of intramolecular six-membered hydrogen-bonded ring. The compounds studied were N-2-pyridylmethyl-N′-phenylthiourea (1), N-2-pyridylmethyl-N′-2-methoxythiourea (2), N-2-pyridylmethyl-N′-4-methoxyphenylthiourea (3), and N-2-pyridylmethyl-N′-4-bromophenylthiourea (4). 1 crystallizes in the monoclinic space group P21/c, with a = 7.419(1) Å, b = 18.437(2) Å, c = 9.656(1) Å, β = 106.277(6)°, V = 1267.8(3) Å3, Z = 4. 2 crystallizes in the monoclinic space group P21/c, with a = 8.064(2) Å, b = 18.382(7) Å, c = 9.865(5) Å, β = 97.81(3)°, V = 1448.8(11) Å3, Z = 4. 3 crystallizes in the monoclinic space group P21/c, with a = 11.472(1) Å, b = 13.520(1) Å, c = 10.088(1) Å, β = 112.60(1)°, V = 1444.5(2) Å3, Z = 4. 4 crystallizes in the triclinic space group P-1, with a = 4.583(3) Å, b = 10.263(3) Å, c = 14.396(3) Å, α = 77.92(2)°, β = 88.55(4)°, γ = 80.02(4)°, V = 652.1(5) Å3, Z = 2. Both thiourea N–H groups form intermolecular hydrogen bonds, one with the thione sulfur atom and the other with the pyridine nitrogen atom but the H-bonding schemes are not the same maybe due to the flexibility of the molecules.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Thallapally, P.K.; Katz, A.K.; Carrell, H.L.; Desiraju, G.R. Cryst. Eng. Com. 2003, 5, 87.

    Google Scholar 

  2. Krepps, M.K.; Parkin, S.; Atwood D.A. Crystal Growth Des. 2001, 1, 291.

    Google Scholar 

  3. Allen, F.H.; Bird, C.M.; Rowland, R.S.; Raithby, P.R. Acta Cryst. 1997, B53, 680.

    Google Scholar 

  4. Venkatachalam, T.K.; Sudbeck, E.; Uckun, F.M.; J. Mol. Struct. 2004, 687, 45.

    Google Scholar 

  5. Mao, C.; Vig, R.; Venkatachalam, T.K.; Sudbeck, E.A.; Uckun, F.M. Bioorg. Med. Chem. Lett. 1998, 8, 2213.

    Google Scholar 

  6. Vig, R.; Mao, C.; Venkatachalam, T.K.; Tuel-Ahlgren, L.; Sudbeck E.A.; Uckun, F.M. Bioorg. Med. Chem. 1998, 6, 1789.

    Google Scholar 

  7. Sudbeck, E.A.; Mao, C.; Vig, R.; Venkatachalam, T.K.; Tuel-Ahlgren, L.; Uckun, F.M. Antimicrob. Agents Chemother. 1998, 32, 25.

    Google Scholar 

  8. Uckun, F.M.; Mao, C.; Pendergrass, S.; Maher, D.; Zhu, D.; Tuel-Ahlgren, L.; Venkatachalam, T.K.; Bioorg. Med. Chem. Lett. 1999, 9, 2721.

    Google Scholar 

  9. Uckun, F.M.; Pendergrass, S.; Maher, D.; Zhu, D.; Tuel-Ahlgren, L.; Mao, C.; Venkatachalam, T.K. Bioorg. Med. Chem. Lett. 1999, 9, 3411.

    Google Scholar 

  10. Mao, C.; Sudbeck, E.A.; Venkatachalam, T.K.; Uckun, F.M. Bioorg. Med. Chem. Lett. 1999, 9, 1593.

    Google Scholar 

  11. West, D.X.; Hermetet, A.K.; Ackerman, L.J.; Valdés-Martínez, J.; Hernández-Ortega, S. Acta Crystallogr. 1999, C55, 811.

    Google Scholar 

  12. Valdés-Martínez, J.; Hernández-Ortega, S.; West, D.X.; Ackerman, L.J.; Swearingen, J.K.; Hermetet, A.K. J. Mol. Struct. 1999, 478, 219.

    Google Scholar 

  13. West, D.X.; Swearingen, J.K.; Hermetet, A.K.; Ackerman, L.J.; Presto, C. J. Mol. Struct. 2000, 522, 27.

    Google Scholar 

  14. Sudbeck, E.A.; Jennissen, J.D.; Venkatachalam, T.K.; Uckun, F.M. Acta Crystallogr. 1999, C55, 2122.

    Google Scholar 

  15. Szczepura, L.F.; Eilts, K.K.; Hermetet, A.K.; Ackerman, L.J.; Swearingen, J.K.; West, D.X. J. Mol. Struct. 2002, 607, 101.

    Google Scholar 

  16. West, D.X.; Swearingen, J.K.; Hermetet, A.K.; Ackerman, L.J. J. Mol. Struct. 2001, 562, 95.

    Google Scholar 

  17. Hermetet, A.K.; Ackerman, L.J.; Eilts, K.K.; Johnson, T.K.; Swearingen, J.K.; Giesen, J.M.; Goldberg, K.I.; Kaminsky, W.; West, D.X. J. Mol. Struct. 2002, 605, 241.

    Google Scholar 

  18. Valdés-Martínez, J.; Hernández-Ortega, S.; Espinosa-Pérez, G.; Presto, C.A.; Hermetet, A.K.; Haslow, K.D.; Ackerman, L.J.; Szczepura, L.F.; Goldberg, K.I.; Giesen, J.M.; Kaminsky, W.; West, D.X. J. Mol. Struct. 2002, 608, 77.

    Google Scholar 

  19. Hermetet, A.K.; Ackerman, L.J.; Swearingen, J.K.; Presto, C.A.; Kelman, D.R.; Giesen, J.M.; Goldberg, K.I.; Kaminsky, W.; West, D.X. J. Chem. Cryst. 2002, 32, 17.

    Google Scholar 

  20. Szczepura, L.F.; Kelman, D.R.; Hermetet, A.K.; Ackerman, L.J.; Goldberg, K.I.; Claborn, K.A.; Kaminsky, W.; West, D.X. J. Mol. Struct. 2002, 608, 245.

    Google Scholar 

  21. Giesen, J.M.; Claborn, K.A.; Goldberg, K.I.; Kaminsky, W.; West, D.X. J. Mol. Struct. 2002, 613, 223.

    Google Scholar 

  22. Kaminsky, W.; Goldberg, K.I.; West, D.X. J. Mol. Struct. 2002, 605, 9.

    Google Scholar 

  23. Valdés-Martínez, J.; Hernández-Ortega, S.; Hermetet, A.K.; Ackerman, L.J.; Presto, C.A.; Swearingen, J.K.; Kelman, D.R.; Goldberg, K.I.; Kaminsky, W.; West, D.X. J. Chem. Cryst. 2002, 32, 431.

    Google Scholar 

  24. Valdés-Martínez, J.; Hernández-Ortega, S.; Ackerman, L.J.; Le, D.T.; Swearingen, J.K.; West, D.X. J. Mol. Struct. 2000, 524, 51

    Google Scholar 

  25. Etter, M.C. J. Phys. Chem. 1991, 95, 4601.

  26. Aakeröy, C.B.; Beatty, A.M.; Helfrich, B.A. Angew. Chem. Int. Ed. 2001, 40, 3240.

    Google Scholar 

  27. Siemens SHELXTL PC ?, Release 4.1 for Siemens Crystallographic Research System; Siemens Analytical X-ray Instruments, Inc.; Madison, WI, {dy1990}.

  28. Waasmaier, D.; Kirfel, A. Acta Crystallogr. 1995, A51, 416.

  29. Mackay, S.; Edwards, C.; Henderson, A.; Gilmore, C.; Stewart, N.; Shankland, K.; Donald, A. MaXus; University of Glasgow: Scotland, {dy1997}.

  30. Sheldrick, G.M. SHELX-97, Program for the Refinement of Crystal Structures; University of Göttingen: Germany, {dy1997}.

  31. Spek, A.L. PLATON for Windows; Utrecht University: The Netherlands, {dy1999}.

  32. Gaussian, Inc.: Carnegie Office Park, Blfg. 6, Pittsburg, Pennsylvania.

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Valdés-Martínez, J., Hernández-Ortega, S., Rubio, M. et al. Study of the sulfur atom as hydrogen bond acceptor in N(2)-pyridylmethyl-N′-arylthioureas. Journal of Chemical Crystallography 34, 533–540 (2004). https://doi.org/10.1023/B:JOCC.0000042022.16392.99

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/B:JOCC.0000042022.16392.99

Navigation