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RAPD and seed coat morphology variation in annual and perennial species of the genus Cicer L.

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Abstract

Molecular and morphological variation of six perennial and five annual species including domesticated chickpea, C. arietinum, were inferred on the basis of RAPD and S.E.M. seed coat features using three outgroup taxa (Lens ervoides, Lathyrus japonica and Pisum sativum). Of the 66 decamer arbitrary primers tested, eight primers revealed 87 informative fragments. Neighbor-joining cluster analysis using Jaccard's coefficient of similarity on the basis of polymorphic fragments indicated a narrow variation in C. arietinum and recognized two major clusters in the genus Cicer. The first one included four species of sect. Monocicer: C. echinospermum, C. arietinum, C. reticulatum and Iranian material of C. bijugum. The second cluster contained annual and perennial species belonging to sections Chamaecicer, Polycicer and Acanthocicer. The character state of morphological and ecological traits on the RAPD phenogram indicated no monophyletic incision. Our results suggested that the high genetic difference between annual and perennial species might be regarded as a rapid speciation of section Monocicer. Reconsideration of traditional classification of sections Polycicer and Acanthocicer is necessary. The ‘Desi’ and ‘Kabuli’ types of C. arietinum could not be separately grouped at the DNA level, and the low level of genetic variation of C. arietinum may result from a bottleneck during the domestication process.

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References

  • Abo-elwafa A., Murai K. and Shimada T. 1995. Intra-and interspecific variations in Lens revealed by RAPD markers. Theor. Appl. Genet. 90: 335–340.

    Google Scholar 

  • Ahmad F. 1999. Random amplified polymorphic DNA(RAPD) analysis reveals genetic relationships among the annual Cicer species. Theor. Appl. Genet. 98: 657–663.

    Google Scholar 

  • Ahmad F. and Slinkard A.E. 1992. Genetic relationships in the genus Cicer L. as revealed by polyacrylamide gel electro-phoresis of seed storage proteins. Theor. Appl. Genet. 84: 688–692.

    Google Scholar 

  • Banerjee H., Pal R.A. and Sharma R.P. 1999. Restriction fragment length polymorphism and random amplified poly-morphic DNA analysis of chickpea accessions. Biologia Plantarum 42(2): 197–208.

    Google Scholar 

  • Barthlott W. 1981. Epidermal and seed surface characters of plants: systematic applicability and some evolutionary aspects. Nordic J. Bot. 1: 345–355.

    Google Scholar 

  • Choumane W., Winter P., Weigned F. and Kahl G. 2000. Conservation and variability of sequence-tagged microsatel-lite sites (STMSs) from chickpea (Cicer arietinum L.) within the genus Cicer. Theor. Appl. Genet. 101: 269–276.

    Google Scholar 

  • Croft A.M., Pang E.C.K. and Taylor P.W.J. 1999. Molecular analysis of Lathyrus sativus L. (grasspea) and related Lathyrus species. Euphytica 107: 167–176.

    Google Scholar 

  • De Leonardis W., Fichera G. and Zizza A. 1996. Pollen and seed morphology of C. arietinum L. cultivars and relationships with C. reticulatum Ladiz. and C. echinospermum P.H. Davis. Plant Genet. Resour. Newslett. 105: 29–36.

    Google Scholar 

  • Doyle J.J. and Doyle J.L. 1987. A rapid DNA isolation proce-dure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11–15.

    Google Scholar 

  • Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783–791.

    Google Scholar 

  • Grime J.P. 1979. Plant Strategies and Vegetation Processes. John Wiley, Chicester, 222 pp.

    Google Scholar 

  • Iruela M., Rubio J., Cubero J.I., Gil J. and Millan T. 2002. Phylogenetic analyses in the genus Cicer and cultivated chick-pea using RAPD and ISSR markers. Theor. Appl. Genet. 104: 643–651.

    Google Scholar 

  • Jodha N.S. and Subba Rao K.V. 1987. Chickpea: World impor-tance and distribution. In: Saxena M.C. and Singh K.B. (eds), The Chickpea. CAB Int. Pb., UK, pp. 1–10.

    Google Scholar 

  • Kabir G. and Singh R.M. 1988. Seed protein electrophoresis in six species and two F1 s ofCicer. Proc. Indian Acad. Sci. 98: 183–189.

    Google Scholar 

  • Kafkas S. and Perl-Treves R. 2001. Morphological and molecu-lar phylogeny of Pistacia species in Turkey. Theor. Appl. Genet. 102: 908–915.

    Google Scholar 

  • Kasahara Y. 1976. The Surface Structure of the Seeds and Fruits of Weeds in Japan Observed with the Scanning Electron Microscope. Yokendo. Ltd., Tokyo.

    Google Scholar 

  • Kazan K. and Muehlbauer F.J. 1991. Allozyme variation and phylogeny in annual species of Cicer (Leguminosae). Plant Syst. Evol. 175: 11–21.

    Google Scholar 

  • Kumar S., Tamura K., Jakobsen I.B. and Nei M. 2001. MEGA 2: Molecular Evolutionary Genetics Analysis Software. Arizona State University, Tempe, Arizona, USA.

    Google Scholar 

  • Kupicha F.K. 1977. The delimitation of the tribe Vicieae (Leguminosae), and the relationships of Cicer L. Bot. J. Linn. Soc. 74: 131–162.

    Google Scholar 

  • Ladizinsky G. and Adler A. 1975. The origin of chickpea as indicated by seed protein electrophoresis. Israel J. Bot. 24: 183–189.

    Google Scholar 

  • Ladizinsky G. and Adler A. 1976. Genetic relationships among the annual species of Cicer L. Theor. Appl. Genet. 48: 197–203.

    Google Scholar 

  • Lersten N.R. and Gunn C.R. 1981. Seed morphology and testa topography in Cicer (Fabaceae: Faboideae). Systematic Botany 6(3): 223–230.

    Google Scholar 

  • Lersten N.R. and Gunn C.R. 1982. Testa characters in tribe Vicieae with notes about Abreae, Cicereae, and Trifolieae (Fabaceae). U.S. Dept. Agri. Tech. Bull. No. 1667.

  • Mimura M., Yasuda K. and Yamaguchi H. 2000. RAPD varia-tion in wild, weedy and cultivated azuki beans in Asia. Genet. Resour. Crop Evol. 47: 603–610.

    Google Scholar 

  • Moreno M.T. and Cubero J.I. 1978. Variation in Cicer arietinum L. Euphytica 27: 465–485.

    Google Scholar 

  • Patil P.B., Vrinten P.L., Scoles G.J. and Slinkard A.E. 1995. Variation in the ribosomal RNA units of the genera Lens and Cicer. Euphytica 83: 33–42.

    Google Scholar 

  • Samec P. and Nasinec V. 1996. The use of RAPD technique for the identification and classification of Pisum sativum L. geno-types. Euphytica 89: 229–234.

    Google Scholar 

  • Saitou N. and Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406–425.

    Google Scholar 

  • Sammour R.H. 1991. Systematic position of the genus Cicer L. (Fabaceae) from data on DNA/DNA hybridization. Folia Geobot. Phytotax. 26: 95–100.

    Google Scholar 

  • Sharma S.K., Dawson I.K. and Waugh R. 1995. Relationships among cultivated and wild lentils revealed by RAPD analysis. Theor. Appl. Genet. 91: 647–654.

    Google Scholar 

  • Singh K.B. and Ocampo B. 1993. Interspecific hybridization in annual Cicer species. J. Genet. Breed. 47: 199–204.

    Google Scholar 

  • Sonnante G., Marangi A., Venora G. and Pignone D. 1997. Using RAPD markers to investigate genetic variation in chickpea. J. Genet. Breed. 51: 303–307.

    Google Scholar 

  • Swofford D.L. 2000. PAUP*: Phylogenetic Analysis Using Parsimony (*and other methods), version 4.0b4a. Sinauer, Sunderland, Massachusetts, USA.

    Google Scholar 

  • Tayyar R.I. and Waines J.G. 1996. Genetic relationships among annual species of Cicer (Fabaceae) using isozyme variation. Theor. Appl. Genet. 92: 245–254.

    Google Scholar 

  • Van der Maesen L.J.G., 1972. Cicer L.: A Monograph of the Genus, with Especial Reference to the Chickpea (Cicer a rietinum L.), Its Ecology and Cultivation. Meded. Landbouwhogeschool, Wageningen 72–10, 342 pp.

  • Van der Maesen L.J.G. 1987. Origin, history and taxonomy of chickpea. In: Saxena M.C. and Singh K.B. (eds), The Chickpea. CAB Int. Publ., UK, pp. 11–34.

    Google Scholar 

  • Venable D.L. 1984. Using interspecific variation to study the ecological significance and evolution of plant life-histories. In: Dirzo R. and Sarukhan J. (eds), Perspectives on Plant Population Ecology, Sinauer Associate Inc. Publ., Sunderland, Massachusetts, pp. 166–187.

    Google Scholar 

  • Williams J.G.K., Kubelik A.R., Livak K.J., Rafalski J.A. and Tingey S.V. 1991. DNA polymorphisms amplified by arbi-trary primers are useful as genetic markers. Nucleic Acid Res. 18: 6531–6535.

    Google Scholar 

  • Zohary D. and Hopf M. 1993. Domestication of Plants in the Old World. Clarendon Press, Oxford, pp. 101–106.

    Google Scholar 

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Javadi, F., Yamaguchi, H. RAPD and seed coat morphology variation in annual and perennial species of the genus Cicer L.. Genetic Resources and Crop Evolution 51, 783–794 (2004). https://doi.org/10.1023/B:GRES.0000034584.43689.f1

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