Skip to main content
Log in

Detection of Genetic Variability in Pearl Millet Downy Mildew (Sclerospora graminicola) by AFLP

  • Published:
Biochemical Genetics Aims and scope Submit manuscript

Abstract

Downy mildew, caused by Sclerospora graminicola, is an economically important disease of pearl millet in the semiarid regions of Asia and Africa. Amplified restriction fragment length polymorphism (AFLP) was used to detect the extent of genomic variation among 19 fungal isolates from different cultivars of pearl millet grown in various regions of India. Fourteen AFLP primer combinations produced 184 polymorphic bands. An unweighted pair-group method of averages cluster analysis represented by dendrogram and principal coordinate analysis separated the mildew collections into four distinct groups. Isolates having characteristic opposite mating abilities, geographic relatedness, virulence, common host cultivars, and changes through asexual generations reflected heterogeneity of the pathogen. The use of AFLP to detect genetic variation is particularly important in selecting mildew isolates to screen breeding material for identification of resistant millet and monitoring changes in S. graminicola in relation to changes in host for effective disease management.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Andrews, D. J., King, S. B., Witcombe, J. R., Singh, S. D., Rai, K. N., Thakur, R. P., Talukdar, B. S., Chavan, S. B., & Singh, P. (1985). Breeding for disease resistance and yield in pearl millet. Field Crops Res. 11:241–258.

    Google Scholar 

  • Baayen, R. P., van den Boogert, P. H. J. F., Bonats, P. J. M., Poll, J. T. K., Blok, W. J., & Waalwijk, C. (2000). Fusarium redolens f.sp asparagi, causal agent of asparagus root rot, crown rot and spear rot. Eur J Plant Pathol. 106(9):907–912.

    Google Scholar 

  • Ball, L. S., & Pike, D. J. (1983). Pathogenic variability of downy mildew (Sclerospora graminicola) on pearl millet. II. Statistical techniques for analysis of data. Ann. Appl. Biol. 102:265–273.

    Google Scholar 

  • Ball, S. L., Pike, D. J., & Burridge, C. Y. (1986). Characterization of populations of Sclerospora graminicola. Ann. Appl. Biol. 108:519–526.

    Google Scholar 

  • Brunken, J. N. (1977). A systematic study of Pennisetum sect. Pennisetum (Graminae). Am. J. Bot. 64:161–176.

    Google Scholar 

  • Day, P. R. (1974). Genetics of Host–Parasite Interactions, Freeman, San Francisco.

  • FAO (1992). Crop Production Yearbook, FAO, Rome.

    Google Scholar 

  • Gonzalez, M., Rodriguez, R., Zavala, M. E., Jacobo, J. L., Hernandez, F., Acosta, J., Martinez, O., & Simpson, J. (1998). Characterization of Mexican isolates of Colletotrichum lindemuthianum by using differential culitvars and molecular markers. Phytopathology 88(4):292–299.

    Google Scholar 

  • Govila, O. P. (1993). Pearl millet breeding strategies in India: Their relevance in molecular mapping. In Witcombe, J. R., & Duncan, R. R., (eds.), Proceedings of an ODA Plant Sciences Research Program Conference, 29 March–1 April, Norwich, UK, pp. 96–98.

  • Gower, J. C. (1966). Some properties of latent root and vector methods used in multivariate analysis. Biometrika 53:325–338.

    Google Scholar 

  • Hash, C. T., Witcombe, J. R., Thakur, R. P., Bhatnagar, S. K., Singh, S. D., & Wilson, J. P. (1997). Breeding for Pearl millet disease resistance. In Proceedings of the International Conference on Genetic Improvement of Sorghum and Pearl Millet, Sept. 22–27, 1996, pp. 337–372. INTSORMIL Publication No. 97–5.INTSORMIL and ICRISAT.

  • Idris, S. L., & Ball, M. O. (1984). Inter-and intra-continental sexual compatibility in Sclerospora graminicola. Plant Pathol. 33:219–223.

    Google Scholar 

  • Janssen, P., Coopman, R., Huys, G., Sings, J., Bleeker, M., Vos, P., Zabeau, M., & Kersters, K. (1996). Evaluation of the DNA fingerprinting method AFLP as a new tool in bacterial taxonomy. Microbiology 142:1881–1893.

    Google Scholar 

  • Jeger, M. J., Gilijamse, E., Bock, C. H., & Frinking, H. D. (1998). The epidemiology, variability and control of the downy mildews of pearl millet and sorghum, with particular reference to Africa. Plant Pathol. 47:544–569.

    Google Scholar 

  • Jones, E. S., Liu, C. J., Gale, M. D., Hash, C. T., & Witcombe, J. R. (1995). Mapping quantitative trait loci for downy mildew resistance in pearl millet. Theor. Appl. Genet. 91(3):448–456.

    Google Scholar 

  • Jones, E. S., Witcombe, J. R., Hash, C. T., Singh, S. D., Gale, M. D., Shaw, D. S., & Liu, C. J. (1993). Mapping QTLS controlling resistance to downy mildew in pearl millet and their application in plant breeding programs as part of Use of Molecular Markers in Sorghum and Pearl Millet Breeding for Developing countries. In Proceedings of an ODA Plant Sciences Research Program Conference, 29 March–1 April, Norwich, UK.

  • Julian, M. C., Acero, J., Salazar, O., Keijer, J., & Rubio, V. (1999). Mating type correlated molecular markers and demonstration of heterokaryosis in the phytopathogenic fungus Thanatephorus cucumeris (Rhizoctina solani) AG 1-IC by AFLP DNA fingerprinting analysis. J. Biotechnol. 67:49–56.

    Google Scholar 

  • Kronstad, J. W., & Staben, C. (1997). Annu. Rev. Genet. 31:245–276.

    PubMed  Google Scholar 

  • Majer, D., Mithen, R., Lewis, B. G., Vos, P., & Oliver, R. P. (1996). The use of AFLP fingerprinting for the detection of genetic variability in fungi. Mycol. Res. 9:1107–1111.

    Google Scholar 

  • Mehta, N., & Thakur, D. P. (1985). Role of cultivar blending in pearl millet downy mildew reduction. Indian J. Plant Pathol. 3(2):296–299.

    Google Scholar 

  • Michelmore, R. W., Pawar, M. N., & Williams, R. J. (1982). Heterothallism in Sclerospora graminicola. Phytopathology 72:1368–1372.

    Google Scholar 

  • Mueller, U. G., Lipari, S. E., & Milgroom, M. G. (1996). Amplified fragment length polymorphism (AFLP) fingerprinting of symbiotic fungi cultured by the fungus-growing ant Cyphomyrmex minutus. Mol. Ecol. 5(1):119–122.

    PubMed  Google Scholar 

  • Pei, M. H., Yuan, Z. W., Hunter, T., & Ruiz, C. (2000). Heterogeneous nature of a new pathotype of Melamospora Rust on Salix revealed by AFLP. Eur. J. Plant Pathol. 106(8):771–779.

    Google Scholar 

  • Reamon-Büttner, S. M., Schondelmaier, J., & Christian, J. (1998). AFLP markers tightly linked to the sex locus in Asparagus officinalis L. Mol. Breed. 4:91–98.

    Google Scholar 

  • Rosendahl, S., & Taylor, J. W. (1997). Development of multiple genetic markers for studies of genetic variation in arbuscular mycorrhizal fungi using AFLP. Mol. Ecol. 6:821–829.

    Google Scholar 

  • Sambrook, J., Fritsch, E. F., & Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd edn., Cold Spring Harbor Laboratory Press, New York.

    Google Scholar 

  • Sastry, J. G., Ramakrishna, W., Sivaramakrishnan, S., Thakur, R. P., Gupta, V. S., & Ranjekar, P. K. (1995). DNA fingerprinting detects genetic variability in pearl millet downy mildew pathogen (Sclerospora graminicola). Theor. Appl. Genet. 91:856–861.

    Google Scholar 

  • Sastry, J. G., Sivaramakrishnan, S., Rao, V. P., Thakur, R. P., Singru, R. S., Gupta, V. S., & Ranjekar, P. K. (2001). Genetic basis of host specificity in Sclerospora graminicola, the pearl millet downy mildew pathogen. Indian J. Phytopathol. 54(3):2001.

    Google Scholar 

  • Sastry, J. G., Sivaramakrishnan, S., Thakur, R. P., Gupta, V. S., & Ranjekar P. K. (1997). Characterization of the genome of Sclerospora graminicola, the causal fungus of downy mildew of pearl millet. World J. Microbiol. Biotechnol. 13:693–697.

    Google Scholar 

  • Singh, S. D., & Gopinath, R. (1985). A seedling inoculation technique for detecting downy mildew resistance in pearl millet. Plant Dis. 68:582–584.

    Google Scholar 

  • Singh, S. D., & King, S. B. (1988). Recovery resistance to downy mildew in pearl millet. Plant Dis. 72:425–428.

    Google Scholar 

  • Singh, S. D., King, S. B., & Weder, J. (1993). Downy Mildew Disease of Pearl Millet. Information bulletin no. 37, ICRISAT, Patancheru, India.

  • Singh, S. D., & Thakur, R. P. (1995). Variable pathogens of millets. In Leslie, J. F., & Frederickson, R. A. (eds.), Disease Analysis Through Genetics and Biotechnology: Interdisciplinary Bridges to Improved Sorghum and Millet Crops, ISBN 0–8138–2125–8, pp. 25–34.

  • Stappen Vander, J., Weltjens, I., Lopez Gama, S, & Volckaert, G. (2000). Genetic diversity in Mexican Styloanthes humilis as revealed by AFLP, compared to the variability of S. humilis accessions of South American origin. Euphytica 113(2):145–154.

    Google Scholar 

  • Thakur, R. P. (1995). Status of international sorghum anthracnose and pearl millet downy mildew virulence nurseries. In Leslie, J. F., & Frederickson, R. A. (eds.), Disease Analysis Through Genetics and Biotechnology: Interdisciplinary Bridges to Improved Sorghum and Millet Crops. ISBN 0–8138–2125–8, pp. 75–92.

  • Thakur, R. P., Pushpavathi, B., & Rao, V. P. (1998). Virulence characterization of single zoospore isolates of S. graminicola. Plant Dis. 82(7):741–751.

    Google Scholar 

  • Thakur, R. P., & Shetty, G. K. (1993). Variation in pathogenicity among single oospore isolates of Sclerospora graminicola, the causal agent of downy mildew of pearl millet. Plant Pathol. 42:715–721.

    Google Scholar 

  • Thakur, R. P., Shetty, K. G., & King, S. B. (1992). Selection of host specific virulence in a sexual population of S. graminicola. Plant Pathol. 41:626–632.

    Google Scholar 

  • Vos, P., Rene, H., Bleeker, M., Reijans, M., van de Lee, T., Hornes, M., Frijters Pot, A. J., Peleman, J., Kuiper, M., & Zabeau, M. (1995). AFLP: A new technique for DNA fingerprinting. Nucleic Acids Res. 23:(21)4407–4414.

    PubMed  Google Scholar 

  • Williams, R. J. (1984). Downy mildew of tropical cereals. Adv. Plant Pathol. 3:1–103.

    Google Scholar 

  • Williams, R. J., Singh, S. D., & Pawar, M. N. (1981). An improved field screening technique for downy mildew resistance in pearl millet. Plant Dis. 65:239–241.

    Google Scholar 

  • Ziegler, R. S., Cuoc, L. X., Scott, R. P., Bernardo, M. A., Chen, D. H., Valent, B., & Nelson, R. J. (1995). The relationship between lineage and virulence in Pyricularia grisea in the Phillipines. Phytopathology 85:443–451.

    Google Scholar 

Download references

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Singru, R., Sivaramakrishnan, S., Thakur, R.P. et al. Detection of Genetic Variability in Pearl Millet Downy Mildew (Sclerospora graminicola) by AFLP. Biochem Genet 41, 361–374 (2003). https://doi.org/10.1023/B:BIGI.0000007772.27724.0e

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/B:BIGI.0000007772.27724.0e

Navigation