Skip to main content
Log in

Isolation of an ILR1 auxin conjugate hydrolase homolog from Arabidopsis suecica

  • Published:
Plant Growth Regulation Aims and scope Submit manuscript

Abstract

We have isolated a homolog of the Arabidopsisthaliana IAA amidohydrolase ILR1 from the related speciesArabidopsis suecica. Employing PCR primers targeted to the5′ and 3′ untranslated regions of ILR1, A.suecica produced an amplified, genomic product (sILR1) of 2027 bp. Thecloned sILR1 gene was sequenced, and the DNA homology between sILR1 and ILR1found to be 98%. The sILR1 cDNA was isolated using RT-PCR, cloned and sequenced.The sILR1 cDNA was found to have 98% homology to its homolog ILR1 both at theDNA and amino acid level. The sILR1 mRNA transcript was found to be expressed inA. suecica tissues at ages 5, 10, and 15 days.Additionally, primers, designed to a ∼300 bp domain conserved in bacterial andplant amidohydrolases, were used to amplify a product from seven members of theBrassicaceae family (A. suecica, A. pumila, A.himalaica, A. griffithiana, A. wallichii, Draba nemoroza andCapsella bursa-pastoris), Lycopersiconesculentum, and two monocot species (Zea maysand Allium cepa) using PCR; this result suggests similargenes may be characterized in other species.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Altschul S.F., Madden T., Schaffer A., Zhang J., Zhang Z., Miller W. et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acid Research 25: 3389-3402.

    Google Scholar 

  • Bandurski R.S., Cohen J.D., Slovin J.P. and Reinecke D.M. 1995. Hormone biosynthesis and metabolism B1: Auxin biosynthesis and metabolism. In: Davies P.J. (ed.), Plant Hormones: Physiology, Biochemistry and Molecular Biology. 2nd edn. Kluwer Academic Publishers, Boston.

    Google Scholar 

  • Barratt N., Dong W., Gage D., Magnus V. and Town C.D. 1998. Auxin conjugates in Arabidopsis thalianaand genetic analysis. In: Proceedings of the 9th International Conference on Arabidopsis Research, Madison, Wisconsin, USA.

  • Bartel B. and Fink G. 1995. ILR1, an amidohydrolase that releases active indole-3-acetic acid from conjugates. Science 268: 1745-1748.

    Google Scholar 

  • Campanella J.J., Ludwig-Mueller J. and Town C.D. 1996. Isolation and characterization of mutants of Arabidopsis thalianawith increased resistance to growth inhibition by IAA-conjugates. Plant Physiology 112: 735-745.

    Google Scholar 

  • Campell B. and Town C.D. 1991. Physiology of hormone autonomous tissue lines derived from radiation-induced tumors of Arabidopsis thaliana. Plant Physiology 97: 1166-1173.

    Google Scholar 

  • Cohen J.D. 1982. Identification and quantitative analysis of indole 3-acetyl-L-aspartate from seeds of Glycine MaxL. Plant Physiology 70: 749-753.

    Google Scholar 

  • Cohen J.D. and Bandurski R.S. 1982. The chemistry and physiology of the bound auxins. Annual Review of Plant Physiology 33: 403-430.

    Google Scholar 

  • Davies R., Goetz D., Lasswell J., Anderson M. and Bartel B. 1999. IAR3 encodes an auxin conjugate hydrolase from Arabidopsis. Cell 11: 365-476.

    Google Scholar 

  • Hangarter R.P. and Good N.E. 1981. Evidence that IAA conjugates are slow release sources of free IAA in plant tissues. Plant Physiology 68: 1424-1427.

    Google Scholar 

  • Keller J. 1992. Cetyltrimethyl ammonium bromide plant DNA extraction (medium and large scale). In: Flanders D. and Dean C. (eds), Arabidopsis: the Complete Guide. Cambridge Laboratory, Norwich,Great Britain.

    Google Scholar 

  • Kneller D.G., Cohen F.E. and Langridge R. 1990. Improvements in Protein Secondary Structure Prediction by an Enhanced Neural Network. Journal of Molecular Biology 214: 171-182.

    Google Scholar 

  • Kowalczyk M. and Sandberg G. 2001. Quantitative Analysis of Indole 3-acetic acid metabolites of Arabidopsis. Plant Physiology 127: 1845-1853.

    Google Scholar 

  • Lasswell J., Rogg L.E., Nelson D.C., Rongey C. and Bartel B. 2000. Cloning and Characterization of IAR1, a gene required for auxin conjugate sensitivity in Arabidopsis. Plant Cell 12: 2395-2408.

    Google Scholar 

  • Meyerowitz E.M. and Pruitt R.E. 1985. Arabidopsis thalianaand plant molecular genetics. Science 229: 1214-1218.

    Google Scholar 

  • O'Kane S.L., Schall B.A. and Al-Shehbaz I.A. 1996. The Origins of Arabidopsis suecica(Brassicaceae) as indicated by nuclear rDNA sequences. Systematic Botany 21: 559-566.

    Google Scholar 

  • Ostin A., Moritz T. and Sandberg G. 1992. Liquid chromatography/mass spectrometry of conjugates and oxidative metabolites of indole-3-acetic acid. Biol. Mass Spectrom 21: 292-298.

    Google Scholar 

  • Sambrook J., Maniatis T. and Fritsch E.F. 1989. Molecular Cloning: A Laboratory Manual. 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.

    Google Scholar 

  • Smith R.F. and Smith T.F. 1992. Pattern-Induced Multi-sequence Alignment (PIMA) algorithm employing secondary structuredependent gap penalties for comparative protein modelling. Protein Engineering 5: 35-41.

    Google Scholar 

  • Smith R.F., Wiese B.A., Wojzynski M.K., Davison D.B. and Worley K.C. 1996. BCM Search Launcher-an integrated interface to molecular biology database search and analysis services available on the World Wide Web. Genome Research 6: 454–462.

    Google Scholar 

  • Sonner J.M. and Purvis W.K. 1985. Natural Occurrence of Indole 3-Acetyl-Aspartate and Indole-3-Acetyl-Glutamate in Cucumber Shoot Tissue. Plant Physiology 77: 784-785.

    Google Scholar 

  • Tam Y.Y., Epstein E. and Normanly J. 2000. Characterization of auxin conjugates in Arabidopsis. Low Steady-State Levels of indole-3-acetyl-aspartate, indole-3-acetyl glutamate, and indole 3-acetyl-glucose. Plant Physiology 123: 589-596.

    Google Scholar 

  • Walz A., Seijin P., Slovin J.P., Ludwig-Mueller J., Momonoki Y.S. and Cohen J.D. 2002. A Gene Encoding a Protein Modified by the Phytohormone Indoleacetic Acid. Proceedings of the National Academy of Sciences 99: 1718-1723.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Campanella, J.J., Bakllamaja, V., Restieri, T. et al. Isolation of an ILR1 auxin conjugate hydrolase homolog from Arabidopsis suecica . Plant Growth Regulation 39, 175–181 (2003). https://doi.org/10.1023/A:1022528318188

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1022528318188

Navigation