Skip to main content
Log in

Structure-independent cross-validation between residual dipolar couplings originating from internal and external orienting media

  • Published:
Journal of Biomolecular NMR Aims and scope Submit manuscript

Abstract

Lanthanide-substituted calcium binding proteins are known to partially orient in high magnetic fields. Orientation provides residual dipolar couplings (rdc's). Two of these systems, Tm3+- and Dy3+-substituted calbindin D9k, dissolved in an external orienting medium (nonionic liquid crystalline phase) provide rdc values which are the sum of those induced by the lanthanides and by the liquid crystalline phase on the native calcium binding protein. This structure-independent check shows the innocence of the orienting medium with respect to the structure of the protein in solution. Furthermore, the simultaneous use of lanthanide substitution and external orienting media provides a further effective tool to control and tune the orientation tensor.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Akke, M., Forsén, S. and Chazin, W.J. (1991) J. Mol. Biol., 220, 173–189.

    Google Scholar 

  • Al-Hashimi, H.M., Majumdar, A., Gorin, A., Kettani, A., Skripkin, E. and Patel, D.J. (2001) J. Am. Chem. Soc., 123, 633–640.

    Google Scholar 

  • Allegrozzi, M., Bertini, I., Janik, M.B.L., Lee, Y.-M., Liu, G. and Luchinat, C. (2000) J. Am. Chem. Soc., 122, 4154–4161.

    Google Scholar 

  • Arnesano, F., Banci, L., Bertini, I., van der Wetering, K., Czisch, M. and Kaptein, R. (2000) J. Biomol. NMR, 17, 295–304.

    Google Scholar 

  • Banci, L., Bertini, I., Huber, J.G., Luchinat, C. and Rosato, A. (1998) J. Am. Chem. Soc., 120, 12903–12909.

    Google Scholar 

  • Barrientos L.G., Dolan, C. and Gronenborn, A.M. (2000) J. Biomol. NMR, 16, 329–337. 368

    Google Scholar 

  • Bastiaan, E.W., Maclean, C., Van Zijl, P.C.M. and Bothner-By, A.A. (1987) Annu. Rep. NMR Spectrosc., 19, 35–77.

    Google Scholar 

  • Bax, A. and Tjandra, N. (1997) J. Biomol. NMR, 10, 289–292.

    Google Scholar 

  • Bayer, P., Varani, L. and Varani, G. (1999) J. Biomol. NMR, 14, 149–155.

    Google Scholar 

  • Bertini, I., Felli, I.C. and Luchinat, C. (2000a) J. Biomol. NMR, 18, 347–355.

    Google Scholar 

  • Bertini, I., Castellani, F., Luchinat, C., Martini, G., Parigi, G. and Ristori, S. (2000b) J. Phys. Chem., 104, 10653–10658.

    Google Scholar 

  • Bertini, I., Janik, M.B.L., Lee, Y.-M., Luchinat, C. and Rosato, A. (2001a) J. Am. Chem. Soc., 123, 4181–4188.

    Google Scholar 

  • Bertini, I., Luchinat, C. and Parigi, G. (2001b) In Solution NMR of Paramagnetic Molecules, Elsevier, Amsterdam.

    Google Scholar 

  • Biekofsky, R.R., Muskett, F.W., Schmidt, J.M., Martin, S.R., Browne, J.P., Bayley, P.M. and Feeney, J. (1999) FEBS Lett., 460, 519–526.

    Google Scholar 

  • Campbell, I.D., Dobson, C.M., Williams, R.J.P. and Xavier, A.V. (1973) Ann. N.Y. Acad. Sci., 222, 163.

    Google Scholar 

  • Cavagnero, S., Dyson, H.J. and Wright, P.E. (1999) J. Biomol. NMR, 13, 387–391.

    Google Scholar 

  • Chou, J.J., Li, S. and Bax, A. (2000) J. Biomol. NMR, 18, 217–227.

    Google Scholar 

  • Choy, W.-Y., Tollinger, M., Mueller, G.A. and Kay, L.E. (2001) J. Biomol. NMR, 21, 31–40.

    Google Scholar 

  • Clore, G.M. and Gronenborn, A.M. (1998) Proc. Natl. Acad. Sci. USA, 95, 5891–5898.

    Google Scholar 

  • Clore, G.M., Starich, M.R. and Gronenborn, A.M. (1998) J. Am. Chem. Soc., 120, 10571–10572.

    Google Scholar 

  • Contreras, M.A., Ubach, J., Millet, O., Rizo, J. and Pons, M. (1999) J. Am. Chem. Soc., 121, 8947–8948.

    Google Scholar 

  • Delaglio, F., Kontaxis, G. and Bax, A. (2000) J. Am. Chem. Soc., 122, 2142–2143.

    Google Scholar 

  • Déméné, H., Tsan, P., Gans, P. and Marion, D. (2000) J. Phys. Chem., B104, 2559–2569.

    Google Scholar 

  • Desvaux, H., Gabriel, J.C.P., Berthault, P. and Camerel, F. (2001) Angew. Chem. Int. Edit., 40, 373–376.

    Google Scholar 

  • Feeney, J., Birdsall, B., Bradbury, A.F., Biekofsky, R.R. and Bayley, P.M. (2001) J. Biomol. NMR, 21, 41–48.

    Google Scholar 

  • Fischer, M.W., Losonczi, J.A., Weaver, J.L. and Prestegard, J.H. (1999) Biochemistry, 38, 9013–9022.

    Google Scholar 

  • Fleming, K., Gray, D., Prasannan, S. and Matthews, S. (2000) J. Am. Chem. Soc., 122, 5224–5225.

    Google Scholar 

  • Fowler, B.A., Tian, F., Al-Hashimi, H.M. and Prestegard, J.H. (2000) J. Mol. Biol., 304, 447–460.

    Google Scholar 

  • Hansen, M.R., Mueller, L. and Pardi, A. (1998) Nat. Struct. Biol., 5, 1065–1074.

    Google Scholar 

  • Huang, X., Moy, F. and Powers, R. (2000) Biochemistry, 39, 13365–13375.

    Google Scholar 

  • Hus, J.C., Marion, D. and Blackledge, M. (2000) J. Mol. Biol., 298, 927–936.

    Google Scholar 

  • Koenig, B.W., Jin-Shan, H., Ottiger, M., Bose, S., Hendler, R.W. and Bax, A. (1999) J. Am. Chem. Soc., 121, 1385–1386.

    Google Scholar 

  • Kretsinger, R.H. (1980) CRC Crit. Rev. Biochem., 8, 119–174.

    Google Scholar 

  • Lee, L. and Sykes, B.D. (1983) Biochemistry, 22, 4366–4373.

    Google Scholar 

  • Linse, S., Brodin, P., Drakenberg, T., Thulin, E., Sellers, P., Elmden, K., Grundstrom, T. and Forsén, S. (1987) Biochemistry, 26, 6723–6735.

    Google Scholar 

  • Luy, B. and Marino, J.P. (2001) J. Biomol. NMR, 20, 39–47.

    Google Scholar 

  • Ma, C. and Opella, S.J. (2000) J. Magn. Reson., 146, 381–384.

    Google Scholar 

  • Meiler, J., Blomberg, N., Nilges, M. and Griesinger, C. (2000) J. Biomol. NMR, 16, 245–252.

    Google Scholar 

  • Mollova, E.T., Hansen, M.R. and Pardi, A. (2000) J. Am. Chem. Soc, 122, 11561–11562.

    Google Scholar 

  • Ottiger, M. and Bax, A. (1999) J. Biomol. NMR, 13, 187–191.

    Google Scholar 

  • Ottiger, M., Delaglio, F., Marquardt, J.L., Tjandra, N. and Bax, A. (1998) J. Magn. Reson., 134, 365–369.

    Google Scholar 

  • Ramirez, B.E. and Bax, A. (1998) J. Am. Chem. Soc., 120, 9106–9107.

    Google Scholar 

  • Rückert, M. and Otting, G. (2000) J. Am. Chem. Soc., 122, 7793–7797.

    Google Scholar 

  • Sass, H.J., Musco, G., Stahl, S.J., Wingfield, P.T. and Grzesiek, S. (2000) J. Biomol. NMR, 18, 303–309.

    Google Scholar 

  • Sass, J., Cordier, F., Hoffmann, A., Rogowski, M., Cousin, A., Omichinski, J.G., Löwen, H. and Grzesiek, S. (1999) J. Am. Chem. Soc., 121, 2047–2055.

    Google Scholar 

  • Saupe, A. and Englert, G. (1963) Phys. Rev. Lett., 11, 462.

    Google Scholar 

  • Schwalbe, H., Grimshaw, S.B., Spencer, A., Buck, M., Boyd, J., Dobson, C.M., Redfield, C. and Smith, L.J. (2001) Protein Sci., 10, 677–688.

    Google Scholar 

  • Tjandra, N. and Bax, A. (1997) Science, 278, 1111–1114.

    Google Scholar 

  • Tjandra, N., Grzesiek, S. and Bax, A. (1996) J. Am. Chem. Soc., 118, 6264–6272.

    Google Scholar 

  • Tjandra, N., Omichinski, J.G., Gronenborn, A.M., Clore, G.M. and Bax, A. (1997) Nat. Struct. Biol., 4, 732–738.

    Google Scholar 

  • Tjandra, N., Marquardt, J. and Clore, G.M. (2000a) J. Magn. Reson., 142, 393–396.

    Google Scholar 

  • Tjandra, N., Tate, S., Ono, A., Kainosho, M. and Bax, A. (2000b) J. Am. Chem. Soc., 122, 6190–6200.

    Google Scholar 

  • Tolman, J.R., Flanagan, J.M., Kennedy, M.A. and Prestegard, J.H. (1995) Proc. Natl. Acad. Sci. USA, 92, 9279–9283.

    Google Scholar 

  • Tycko, R., Blanco, F.J. and Ishii, Y. (2000) J. Am. Chem. Soc., 122, 9341.

    Google Scholar 

  • Veglia, G. and Opella, S.J. (2000) J. Am. Chem. Soc., 122, 11733–11734.

    Google Scholar 

  • Vogel, H.J., Drakenberg, T., Forsén, S., O'Neil, J.D. and Hofmann, T. (1985) Biochemistry, 24, 3870–3876.

    Google Scholar 

  • Volkman, B.F., Wilkens, S.J., Lee, A.L., Xia, B., Westler, W.M., Berger, R. and Markley, J.L. (1999) J. Am. Chem. Soc., 121, 4677–4683.

    Google Scholar 

  • Wang, H., Eberstadt, M., Olejniczak, E.T., Meadows, R.P. and Fesik, S.W. (1998) J. Biomol. NMR, 12, 443–446.

    Google Scholar 

  • Warren, J.J. and Moore, P.B. (2001) J. Biomol. NMR, 20, 311–323.

    Google Scholar 

  • Zhou, H., Vermeulen, A., Jucker, F.M. and Pardi, A. (1999) Biopolymers, 52, 168–180.

    Google Scholar 

  • Zweckstetter, M. and Bax, A. (2001) J. Biomol. NMR, 20, 365–377.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Barbieri, R., Bertini, I., Lee, YM. et al. Structure-independent cross-validation between residual dipolar couplings originating from internal and external orienting media. J Biomol NMR 22, 365–368 (2002). https://doi.org/10.1023/A:1014980101965

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1014980101965

Navigation