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Variations in microbial populations in soils with different methane uptake rates

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Abstract

The rate of methane oxidation has been measured from under a variety of land uses and management practices on Rothamsted Experimental Station. All these sites have their management histories well documented, in many cases over centuries, and experience the same atmospheric inputs. We have found consistent patterns in methane oxidation rates associated with land use, where the rate of methane oxidation in unfertilized arable soil (c. 30 µg CH4 m-2 d-1) is only 15 % that in undisturbed grassland and woodland soils (c. 200 µg CH4 m-2 d-1). Investigation of the mechanisms regulating these differences have shown that they are microbially mediated.

The microbial basis for differences in methane uptake rates are unclear, but probably involve three groups of microorganism, methanogens, methanotrophs and ammonia oxidisers. Using traditional enumeration techniques we show that soils under grassland and woodland have similar numbers of bacteria and also similar numbers of putative methane oxidisers (organisms of unknown identity, that can oxidise methane), but that an unfertilized arable soil has significant lower total bacterial numbers and also putative methane oxidisers. This study is extended to compare the capacities of the soils under the different land uses to metabolise multi-carbon compounds in addition to methane. Using a modification of the Biolog<reg> technique we demonstrate that the microbial populations in the soil under the woodland and grassland can metabolise a greater range of carbon compounds compared to the arable soil, as well as having higher methane oxidising capabilities.

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References

  • Adamsen, A.P.S & King, G.M. 1993. Methane consumption intemperate and subartic forest soils: rates, vertical zonation, and responses to water and nitrogen. Appl.Environ. Microbiol. 59: 485–490.

    CAS  Google Scholar 

  • Avery, B.W. & Bullock, P. 1969. Morphology and classification of Broadbalk soils. Rothamsted Experimental Station Report for 1968. Part 2. pp 63–81.

  • Avery, B.W. and Catt, J.A. 1995. The soil at Rothamsted. Lawes Agricultural Trust Ltd. Harpenden, U.K. 44 pp.

    Google Scholar 

  • Bedard, C. & Knowles, R. 1989. Physiology, biochemistry and specific inhibitors of CH4, NH +4 and CO oxidation by methanotrophs and nitrifiers. Microbiol. Rev. 53: 68–84.

    CAS  Google Scholar 

  • Bouwman, A.F. Soils and the Greenhouse Effect. 1990. John Wiley & Sons Ltd. pp 25–32.

  • Cardy, D.L.N., Laidler, V., Salmond, G.P.C. & Murrell, J.C. 1991. Molecular analysis of the methane monooxygenase (MMO) gene cluster of Methylosinus trichosporium OB3b. Mol. Microbiol. 5: 335–342.

    CAS  Google Scholar 

  • Cardy, D.L.N., Laidler, V., Salmond, G.P.C. & Murrell, J.C. 1991. The methane monooxygenase (MMO) gene cluster of Methylosinus trichosporium: cloning and sequencing of the mmoC gene. Arch. Microbiol. 156: 477–483.

    CAS  Google Scholar 

  • Dalton, H. & Leak, D.J. 1985. Methane oxidation by microorganisms. In R.K. Poole and C.S. Dow (eds.), Microbial gas metabolism: mechanistic, metabolic and biotechnological aspects. Academic press, Inc. (London). Ltd., London. pp 173–200.

    Google Scholar 

  • Dalton, H. & Whittenbury, R. 1976. The acetylene reduction technique as an assay for nitrogenase activity in the methane oxidising bacterium Methylococcus capsulatus (Bath). Arch. Microbiol. 109: 147–151.

    Article  CAS  Google Scholar 

  • DeJong, T.M. 1975. A comparison of three diversity indices based on their components of richness and evenness. Oikos. 26: 222–227.

    Google Scholar 

  • Hanson, R.S. 1980. Ecology and diversity of methylotrophic bacteria. Adv. Appl Microbiol. 26: 3–39.

    Article  CAS  Google Scholar 

  • Hanson, R.S. 1992. Introduction. In J.C. Murrell & H. Dalton (eds.), Methane and Methanol Utilizers. Plenum Press, New York. pp 1–15.

    Google Scholar 

  • Hooper, A.B. 1984. Ammonia oxidation and energy transduction in the nitrifying bacteria. In W.R. Strohl and O.H. Tuovinen (eds.), Microbial chemoautotrophy. Ohio State University Press, Columbus. pp133–167.

    Google Scholar 

  • Hütsch, B.W., Webster, C.P. and Powlson. D.S. 1993. Long-term effects of nitrogen fertilization on methane oxidation in soil of the Broadbalk wheat experiment. Soil Biol. & Biochem. 25: 1307–1317.

    Article  Google Scholar 

  • Hütsch, B.W., Webster, C.P. and Powlson. D.S. 1994. Methane oxidation in soil as affected by land use, pH, and N fertilization. Soil Biol. & Biochem. 26: 1613–1622

    Article  Google Scholar 

  • Hyman, M.R. & Wood, P.A. 1983. Methane oxidation by Nitrosomonas europaea. Biochem J. 212: 31–37.

    CAS  Google Scholar 

  • Kennedy, A.C. & Smith, K.L. 1995. Soil microbial diversity and the sustainability of agricultural soils. Plant & Soil. 170: 75–86.

    Article  CAS  Google Scholar 

  • Koh, S.C., Bowman, J.P. & Sayler, G.S. 1993. Soluble methane monooxygenase production and trichloroethylene degradation by a type I methanotroph Methylomonas methanica (68-1). Appl. Environ. Microbiol. 59: 960–967.

    CAS  Google Scholar 

  • Lees, V., Owens, N.J.P. & Murrell, J.C. 1992. Nitrogen metabolism in marine methanotrophs. Arch. Microbiol. 157: 60–65.

    Google Scholar 

  • Mosier, A., Schimel, D., Valentine, D., Bronson, K. and Parton, W. 1991. Methane and nitrous oxide fluxes in native and cultivated grasslands. Nature. 350: 330–332.

    Article  CAS  Google Scholar 

  • Murrell, J.C. & Dalton, H. 1983. Ammonia assimilation in Methylococcus capsulatus (Bath) and other obligate methanotrophs. J. Gen. Micro. 129: 1197–1206.

    CAS  Google Scholar 

  • Ojima, D.S., Valentine, D.W., Mosier, A.R., Parton, W.J. and Schimel, D.S. 1993. Effect of land use change on methane oxidation in temperate forest and grassland soils. Chemosphere. 26: 675–685.

    Article  CAS  Google Scholar 

  • O'Neill, J.G. & Wilkinson, J.F. 1977. Oxidation of ammonia by methane-oxidising bacteria and the effects of ammonia on methane oxidation. J. Gen Microbiol. 100: 407–412.

    Google Scholar 

  • Ross, G.J.S. 1984. Parallel model analysis: fitting non-linear models to several sets of data. In. Compstat 1984, Proceedings in Computational Statistics 6th Symposium, Prague. Eds T. Havranek, Z SIdak and M. Noval, pp 458–463. Physica, Wien.

    Google Scholar 

  • Shannon, C.E. & Weaver, W. 1949. The mathematical theory of communication. University Illinois Press, Urbana, IL. 117 p.

    Google Scholar 

  • Stainthorpe, A.C., Murrell, J.C., Salmond, G.P.C., Dalton, H. & Lees, V. 1989. Molecular analysis of methane monooxygenase from Methylococcus capsulatus (Bath). Arch. Microbiol. 152: 154–159.

    Article  CAS  Google Scholar 

  • Stainthorpe, A.C., Lees, V., Salmond, G.P.C., Dalton, H. & Murrell, J.C. 1990. The methane monoxygenase gene cluster of Methylococcus capsulatus (Bath.). Gene. 91: 27–34.

    Article  CAS  Google Scholar 

  • Steudler, P.A., Bowden, R.D., Melillo, J.M. and Aber, J.D. 1989. Influence of nitrogen fertilization on methane uptake in temperate forest soils. Nature. 341: 314–316.

    Article  Google Scholar 

  • Torsvik, V., Goksoyr, J. & Daae, F.L. 1990. High diversity in DNA of soil bacteria. Appl. Environ. Microbiol. 56: 782–787.

    CAS  Google Scholar 

  • Tsai, Y.L., Palmer, C.J. & Sangermano, L.R. 1993. Detection of E. coli in sewage sludge by polymerase chain reaction. Appl. Environ. Microbiol. 59: 353–357

    CAS  Google Scholar 

  • Willison, T.W., Webster, C.P., Goulding, K.W.T. & Powlson, D.S. 1995. Methane oxidation in temperate soils: Effects of land use and the chemical form of nitrogen fertilizer. Chemosphere. 30: 539–546.

    Article  CAS  Google Scholar 

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Willison, T., O'Flaherty, M., Tlustos, P. et al. Variations in microbial populations in soils with different methane uptake rates. Nutrient Cycling in Agroecosystems 49, 85–90 (1997). https://doi.org/10.1023/A:1009756210624

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