Skip to main content
Log in

Role of hydrophobic effects in mechanistic QSAR

  • Published:
Perspectives in Drug Discovery and Design

Abstract

To extend the successful application of Hammett equations, previously used to predict equilibrium and rates of physico-chemical reactions with electronic and steric parameters, to the realm of biology and biochemistry, a parameter that measures hydrophobicity is required. The partition coefficient of a solute between octanol and water, expressed in log terms to put it on the same free-energy basis as the classic Hammett parameters, has been shown to be widely applicable. It is directly involved in passive transport through membranes, in binding to proteins, and in specific binding at active sites in enzymes. Methods of calculating logP(octanol) that reflect the solvation forces involved, can be useful in elucidating unusual solute conformations that may be preferred in a non-polar environment.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Hansch, C., Hoekman, D. and Gao, H., Chem. Rev., 96 (1996) 1045.

    PubMed  Google Scholar 

  2. Hansch, C., Gao, H. and Hoekman, D, In Devillers, J. (Ed.) Comparative QSAR, Taylor and Francis, London, 1998, pp. 285–368.

    Google Scholar 

  3. C-QSAR and CLOGP programs, BioByte Corporation, Claremont, CA.

  4. Hansch, C. and Klein, T.E., Acc. Chem. Res., 19 (1986) 392.

    Google Scholar 

  5. Selassie, C.D., Li, R.-L., Poe, M. and Hansch, C., J. Med. Chem., 34 (1991) 46.

    Google Scholar 

  6. Selassie, D.C., de Soyza, T.V., Rosario, M., Gao, H. and Hansch, C., Chem.-Biol. Interact., 113 (1998) 175.

    Google Scholar 

  7. Hansch, C. and Gao, H., Chem. Rev., 97 (1997) 2995.

    Google Scholar 

  8. Rawn, J.D., In Biochemistry, Niel Patterson Publ., Burlington, NC, 1989, Chapter 5.2.a.

    Google Scholar 

  9. 'Protein-Fold’ program, Tripos, St. Louis, MO.

  10. El Tayar, N., Mark, A.E., Vallat, P., Brunne, R.M., Testa, B. and van Gunsteren, W.F., J. Med. Chem., 36 (1993) 3757.

    PubMed  Google Scholar 

  11. DeBolt, S.E. and Kollman, P.A., J. Am. Chem. Soc., 117 (1995) 5316.

    Google Scholar 

  12. Reynolds, C.H., J. Chem. Inf. Comput. Sci., 35 (1995) 738.

    Google Scholar 

  13. Reynolds, C.H., Chem. Tech., Nov. (1998) 28.

  14. Palm, K., Luthman, K., Ungell, A.-L., Standlund, G., Beigi, F., Lundahl, P. and Artursson, P., J. Med. Chem., 41 (1998) 5382.

    Google Scholar 

  15. Steinmetz, W., Bersch, R., Towson, J. and Pesiri, D., J. Med. Chem., 35 (1992) 4842.

    Google Scholar 

  16. Stephenson, G., Stowell, J., Toma, P., Pfeiffer, R. and Byrn, S., J. Pharm. Sci., 86 (1997) 1239.

    Google Scholar 

  17. CambridgeSoft Corp., Cambridge, MA.

  18. Tripos, SYBYL and CoMFA, Tripos, St. Louis, MO.

  19. Kellogg, G.E., Semus, S.F. and Abraham, D.J., J. Comput.-Aided Mol. Design, 5 (1991) 545.

    Google Scholar 

  20. Testa, B., Carrupt, P.-A., Gaillard, P., Billois, F. and Weber, P., Pharm. Res., 13 (1996) 335.

    PubMed  Google Scholar 

  21. Marcel, C., Boss, G., van de Waterbeemd, H. and Testa, B., Eur. J. Med. Chem., 20 (1985) 459.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Leo, A.J., Hansch, C. Role of hydrophobic effects in mechanistic QSAR. Perspectives in Drug Discovery and Design 17, 1–25 (1999). https://doi.org/10.1023/A:1008762321231

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1008762321231

Navigation