Skip to main content
Log in

Facile measurement of polypeptide JHNHα coupling constants from HMQC-J spectra

  • Published:
Journal of Biomolecular NMR Aims and scope Submit manuscript

Abstract

A method, based on linewidth measurements, is described which permits the rapid and facile determination of JHNHα coupling constants from 15N labeled proteins. Using appropriately processed HMQC-J data, we have found that a simple linear relationship exists between the half-height linewidth (Δν1/2) of 15N–1H cross peaks and their corresponding JHNHα coupling constants. Tests indicate that this technique permits the accurate measurement of up to 100 JHNHα coupling constants in less than 30 min. Furthermore, the JHNHα measurements can be done manually – without the need of any computer-based curve-fitting or minimization. Comparisons between JHNHα values predicted from high resolution X-ray structures and those determined using this technique indicate that the method is both accurate and precise (correlation coefficient = 0.90, rmsd = 0.75 Hz).

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Bax, A., Vuister, G. W., Grzesiek, S., Delaglio, F., Wang, A. C., Tschudin, R. and Zhu, G. (1994) Methods Enzymol., 239, 79–105.

    Google Scholar 

  • Billeter, M., Neri, D., Otting, G., Qian, Y. Q. and Wüthrich, K. (1992) J. Biomol. NMR, 2, 257–274.

    Google Scholar 

  • Chandrasekhar, K., Krause, G., Holmgren, A. and Dyson, H. J. (1991) FEBS Lett., 284, 178–183.

    Google Scholar 

  • Forman-Kay, J. D., Gronenborn, A. M., Kay, L. E., Wingfield, P. T. and Clore, M. G. (1990) Biochemistry, 29, 1566–1572.

    Google Scholar 

  • Gagne, S. M., Li, M. X. and Sykes, B. D. (1997) Biochemistry, 36, 4386–4392.

    Google Scholar 

  • Gagne, S. M., Tsuda, S., Li, M. X., Chandra, M., Smillie, L. B. and Sykes, B. D. (1994) Protein Sci., 3, 1961–1974.

    Google Scholar 

  • Garrett, D. S., Kuszewski, J., Hancock, T. J., Lodi, P. T., Vuister, G. W., Gronenborn, A. M. and Clore, G. M. (1994) J. Magn. Reson., B104, 99–103.

    Google Scholar 

  • Goodgame, M. M. and Geer, S. M. (1993) J. Magn. Reson., A102, 246–248.

    Google Scholar 

  • Katti, S. K., LeMaster, D. M. and Eklund, H. (1990) J. Mol. Biol., 212, 167–184.

    Google Scholar 

  • Kay, L. E. and Bax, A. (1990) J. Magn. Reson., 86, 110–126.

    Google Scholar 

  • Kay, L. E., Brooks, B., Sparks, S. W., Torchia, D. A. and Bax, A. (1989) J. Am. Chem. Soc., 111, 5488–5490.

    Google Scholar 

  • Pardi, A., Billeter, M. and Wüthrich, K. (1984) J. Mol. Biol., 180, 741–751.

    Google Scholar 

  • Plesniak, L. A., Wakarchuk, W. W. and McIntosh, L. P. (1996) Protein Sci., 5, 1118–1135.

    Google Scholar 

  • Satyshur, K. A., Pyzalska, D., Rao, S. T., Greaser, M. and Sundaralingam, M. (1994) Acta Crystallogr. D, 50, 40–49.

    Google Scholar 

  • Sonnichsen, F. D., DeLuca, C. I., Davies, P. L. and Sykes, B. D. (1996) Structure, 4, 1325–1337.

    Google Scholar 

  • Sonnichsen, F. D., Sykes, B. D., Chao, H. and Davies, P. L. (1993) Science, 259, 1154–1157.

    Google Scholar 

  • Vuister, G. W. and Bax, A. (1993) J. Am. Chem. Soc., 113, 7772–7777.

    Google Scholar 

  • Wakarchuk, W. W., Cambell, R. L., Sung, W. L., Davoodi, J. and Yaguchi, M. (1994) Protein Sci., 3, 467–474.

    Google Scholar 

  • Wang, A. C. and Bax, A. (1996) J. Am. Chem. Soc., 118, 2483–2494.

    Google Scholar 

  • Wang, Y., Nip, A. M. and Wishart, D. S. (1997) J. Biomol. NMR, 10, 373–382.

    Google Scholar 

  • Weisemann, R., Rüterjans, J., Schalbe, H., Schleucher, J., Bermel, W. and Griesinger, C. (1994) J. Biomol. NMR, 4, 231–240.

    Google Scholar 

  • Wishart, D. S. (1991) Ph. D. Thesis, Yale University, New Haven, CT.

  • Wishart, D. S., Bigam, C. G., Yao, J., Abildgaard, F., Dyson, H. J., Oldfield, E., Markley, J. L. and Sykes, B. D. (1995) J. Biomol. NMR, 6, 135–140.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Wishart, D.S., Wang, Y. Facile measurement of polypeptide JHNHα coupling constants from HMQC-J spectra. J Biomol NMR 11, 329–336 (1998). https://doi.org/10.1023/A:1008202230140

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1008202230140

Navigation