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An assessment of the genetic diversity of the founders of the European captive population of Asian lion (Panthera leo leo), using microsatellite markers and studbook analysis

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Abstract

A European Endangered Species Programme (EEP) was established in the early 1990s, in order to manage a captive population of Asian lions (Panthera leo leo) within European zoos. The founders of this population comprised of nine individuals that originated from a captive population in India. During 2007–2009, 57 lions were born in the European captive population. Of these births, 35 individuals died within 20 days, three died within two months and one individual was euthanased at four months old. Indeed, over 50% of the total historical captive population died within 30 days of birth. The ‘European Studbook for the Asian Lion’ shows that the EEP founder population contains individuals from matings of full and half siblings, including all female founders.

It is probable that high levels of inbreeding within this captive population are causing high levels of stillbirths and infant mortality. Previous research has shown that there is limited genetic variation in the captive population in India. This study uses the same microsatellite markers to establish the level of genetic variation that was present when the EEP population was established in comparison with that observed in the Indian zoo population, from which it was derived. Only three of the 12 microsatellite markers, showing variation in the Indian captive population, showed bi-allelic heterozygosity in the EEP founders, indicating that most variation was not present during the establishment of the EEP population. Therefore, the future of the Asian lion EEP is compromised by lack of genetic variation and high levels of inbreeding, which can only be alleviated by importing further individuals with different genotypes from India.

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References

  • Amos, W., Hoffman, J.I., Frodsham, A., Zhang, L., Best, S., Hill, A.V.S., 2007. Automated binning of microsatellite alleles: problems and solutions. Mol. Ecol. Notes 7, 10–14.

    Article  CAS  Google Scholar 

  • Antunes, A., Troyer, J.L., Roelke, M.E., Pecon-Sattery, J., Packer, C., Winterbach, C., Winterbach, H., Hemson, G., Frank, L., Stander, P., Sieffert, L., Driciru, M., Funston, P.J., Alexander, K.A., Prager, K.C., Mills, G., Wildt, D., Bush, M., O’Brien, S.J., Johnson, W.E., 2008. The evolutionary dynamics of the lion Panthera leo revealed by host and viral population genomics. PLoS Genet. 4, e1000251.

    Article  Google Scholar 

  • Ashraf, N.V.K., Chellam, R., Molur, S., Sharma, D., Walker, S., 1995. Asiatic lion (Panthera leo persica). In: Population and Habitat Viability Assessment and Global Animal Survival Plan Workshops, Baroda, India.

    Google Scholar 

  • Barnett, R., Yamaguchi, N., Barnes, I., Cooper, A., 2006a. Lost populations and preserving genetic diversity in the lion Panthera leo: Implications for its ex situ conservation. Conserv. Genet. 7, 507–514.

    Article  Google Scholar 

  • Barnett, R., Yamaguchi, N., Barnes, I., Cooper, A., 2006b. The origin, current diversity and future conservation of the modern lion (Panthera leo). Proc. R. Soci. B-Biol. Sci. 273, 2119–2125.

    Article  Google Scholar 

  • Bertola, L.D., Jongbloed, H., Van Der Gaag, K.J., De Knijff, P., Yamaguchi, N., Hooghiemstra, H., Bauer, H., Henschel, P., White, P.A., Driscoll, C.A., Tende, T., 2016. Phylogeographic patterns in Africa and High Resolution Delineation of genetic clades in the Lion (Panthera leo). Sci. Rep. 6, 30807.

    Article  CAS  Google Scholar 

  • Black, S.A., Fellous, A., Yamaguchi, N., Roberts, D.L., 2013. Examining the extinction of the Barbary lion and its implications for felid conservation. PLoS One 8, e60174.

    Article  CAS  Google Scholar 

  • Boakes, E.H., Wang, J., Amos, W., 2007. An investigation of inbreeding depression and purging in captive pedigreed populations. Heredity 98, 172–182.

    Article  CAS  Google Scholar 

  • Burger, J., Rosendahl, W., Loreille, O., Hemmer, H., Eriksson, T., Gotherstrom, A., Hiller, J., Collins, M.J., Wess, T., Alt, K.W., 2004. Molecular phylogeny of the extinct cave lion Panthera leo spelaea. Mol. Phylogenet. Evol. 30, 841–849.

    Article  CAS  Google Scholar 

  • Dakin, E.E., Avise, J.C., 2004. Microsatellite null alleles in parentage analysis. Heredity 93, 504–509.

    Article  CAS  Google Scholar 

  • Dorman, N., 2009. European studbook for the Asiatic ion (Panthera leo persica). Number 5 (2007-2009).

    Google Scholar 

  • Driscoll, C.A., Menotti-Raymond, M., Nelson, G., Goldstein, D., O’Brien, S.J., 2002. Genomic microsatellites as evolutionary chronometers: a test in wild cats. Genome Res. 12, 414–423.

    Article  CAS  Google Scholar 

  • Dubach, J., Patterson, B.D., Briggs, M.B., Venzke, K., Flamand, J., Stander, P., Scheepers, L., Kays, R.W., 2005. Molecular genetic variation across the southern and eastern geographic ranges of the African lion, Panthera leo. Conserv. Genet. 6, 15–24.

    Article  CAS  Google Scholar 

  • Frankham, R., Ballou, J., Briscoe, D.A., 2010. Introduction to Conservation Genetics, 2nd ed. Cambridge University Press, Cambridge.

    Book  Google Scholar 

  • Gaur, A., Shailaja, K., Singh, A., Arunabala, V., Satyarebala, B., Singh, L., 2006. Twenty polymorphic microsatellite markers in the Asiatic lion (Panthera leo persica). Conserv. Genet. 7, 1005–1008.

    Article  CAS  Google Scholar 

  • Gautschi, B., Jacob, G., Negro, J.J., Godoy, J.A., Muller, J.P., Scmid, B., 2003. Analysis of relatedness and determination of the source of founders in the captive bearded vulture, Gypaetus barbatus, population. Conserv. Genet. 4, 479–490.

    Article  CAS  Google Scholar 

  • Gilbert, D.A., Packer, C., Pusey, A.E., Stephens, J.C., O’Brien, S.J., 1991. Analytical DNA Fingerprinting in lions - Parentage genetic diversity, and kinship. J. Hered. 82, 378–386.

    Article  CAS  Google Scholar 

  • Goldstein, P.Z., Desalle, R., Amato, G., Vogler, A.P., 2000. Conservation genetics at the species boundary. Conserv. Biol. 14, 120–131.

    Article  Google Scholar 

  • Goncalves Da Silva, A., Lalonde, D.R., Quse, V., Shoemaker, A., Russello, M.A., 2010. Genetic approaches refine ex situ lowland tapir (Tapirus terrestris) conservation. J. Hered. 101, 581–590.

    Article  Google Scholar 

  • Guardian, 2015. India’s Asiatic Lion Population Rising, Available at http://www.theguardian.com/environment/2015/may/11/indiasasiatic-lionpopulation-rising [accessed on 3rd November 2015] [Online].

    Google Scholar 

  • Ivy, J.A., Miller, A., Lacy, R.C., Dewoody, J.A., 2009. Methods and prospects for using molecular data in captive breeding programs: an empirical example using parma wallabies (Macropus parma). J. Hered. 100, 441–454.

    Article  Google Scholar 

  • Kalahari Predator Conservation Trust, 2013. Lions, Available at http://www.kalaharipredator-conservation.com/en/predators/lions [accessed on 23rd August 2012] [Online].

    Google Scholar 

  • Kitchener, A.C., Breitenmoser-Wursten, Ch, Eizirik, E., Gentry, A., Werdelin, L., Wilting, A., Yamaguchi, N., Abramov, A.V., Christiansen, P., Driscoll, C., Duckworth, J.W., Johnson, W., Luo, S.-J., Meijaard, E., O, Meijaar, P., Sanderson, J., Seymour, K., Bruford, M., Groves, C., Hoffmann, M., Nowell, K., Timmons, Z., Tobe, S., 2017. A revised taxonomy of the Felidae. The Final Report of the Cat Classification Task Force of the IUCN/SSC Cat Specialist Group. Cat News Special Issue 11, 1–80.

    Google Scholar 

  • Lacy, R.C., Ballou, J.D., Pollak, J.P., 2012. PMx: software package for demographic and genetic analysis and management of pedigreed populations. Methods Ecol. Evol. 3, 433–437.

    Article  Google Scholar 

  • Miquel, C., Bellemain, E., Poillot, C., Bessière, J., Durand, A., Taberlet, P., 2006. Quality indexes to assess the reliability of genotypes in studies using noninvasive sampling and multipletube approach. Mol. Ecol. Notes 6, 985–988.

    Article  Google Scholar 

  • O’Brien, S.J., Martenson, J.S., Packer, C., Herbst, L., De Vos, V., Joslin, P., Ott-Joslin, J., Wildt, D.E., Bush, M., 1987. Biochemical genetic variation in geographic isolates of African and Asiatic lions. Natl. Geog. Res. 3, 114–124.

    Google Scholar 

  • O’Brien, S.J., 1994. A role for molecular genetics in biological conservation. Proc. Natl. Acad. Sci. U. S. A. 91, 5748–5755.

    Article  Google Scholar 

  • Paulson, M., 1999. Pride in place: reintroduction of Asiatic lions in Gir Forest, India. Restoration and Reclamation Review, 4.

    Google Scholar 

  • Raymond, M., Rousset, F., 1995. Genepop (Version-1.2) - Populationgenetics software for exact tests and ecumenicism. J. Hered. 86, 248–249.

    Article  Google Scholar 

  • Rousset, F., 2008. GENEPOP ’007: A complete reimplementation of the GENEPOP software for Windows and Linux. Mol. Ecol. Resources 8, 103–106.

    Article  Google Scholar 

  • Russello, M.A., Amato, G., 2004. Ex situ population management in the absence of pedigree information. Mol. Ecol. 13, 2829–2840.

    Article  CAS  Google Scholar 

  • Ryder, O.A., 1986. Species conservation and systematics - the dilemma of subspecies. Trends Ecol. Evol. 1, 9–10.

    Article  Google Scholar 

  • Singh, A., Shailaja, K., Gaur, A., Singh, L., 2002. Development and characterization of novel microsatellite markers in the Asiatic lion (Panthera leo persica). Mol. Ecol. Notes 2, 542–543.

    Article  CAS  Google Scholar 

  • Taberlet, P., Grifin, S., Goossens, B., Questiau, S., Manceau, V., Escaravage, N., Waits, L.P., Bouvet, J., 1996. Reliable genotyping of samples with very low DNA quantities using PCR. Nucleic Acids Res. 24, 3189–3194.

    Article  CAS  Google Scholar 

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Correspondence to Andrew C. Kitchener.

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Atkinson, K.E., Kitchener, A.C., Tobe, S.S. et al. An assessment of the genetic diversity of the founders of the European captive population of Asian lion (Panthera leo leo), using microsatellite markers and studbook analysis. Mamm Biol 88, 138–143 (2018). https://doi.org/10.1016/j.mambio.2017.10.001

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