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A comparison of sampling methods to accurately estimate the incidence of leaf rust on conilon coffee

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Abstract

Coffee leaf rust (Hemileia vastatrix) is considered the main disease of conilon coffee (Coffea canephora). Sampling methods aiming at accurate estimation of disease intensity are key for epidemiological studies and management, but there is not one method available for leaf rust of conilon. Thus, the objective with this study was to develop and validate a method to sample leaves to estimate the incidence of rust in conilon coffee plants. Nine within-plant sampling methods for rust incidence (proportion of symptomatic leaves), based on a combination of canopy height of plagiotropic branches, node position and leaf number per branch were established and evaluated during monthly assessment of natural epidemics from October 2011 to April 2013, representing two stages of crop development. The monthly estimated incidence values were compared to the actual rust incidence using linear regression, Lin’s concordance correlation (ρc) and progress curve. The most efficient method was selected based on accuracy and precision. The most accurate and precise sampling method by which to represent the actual incidence was of all the leaves from four plagiotropic branches distributed in the four quadrants in the upper third of the plant. This method was efficient during all crop development stages. Moreover, the estimated incidence progress curve showed the same pattern of temporal distribution as the actual incidence. Thus, a specific method for leaf sampling and estimating the incidence of leaf rust in conilon coffee plants was developed and validated.

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References

  • Albane RRO (2011) Progresso da ferrugem do cafeeiro em clones de Coffea canephora Pierre ex. Dissertação, Universidade Federal do Espírito Santo, Alegre

    Google Scholar 

  • Avelino J, Cristancho M, Georgiou S, Imbach P, Aguilar L, Bornemann G, Läderach P, Anzueto F, Hruska AJ, Morales C (2015) The coffee rust crises in Colombia and central America (2008–2013): impacts, plausible causes and proposed solutions. Food Sec 7:303–321. https://doi.org/10.1007/s12571-015-0446-9

    Article  Google Scholar 

  • Belan LL, Pozza EA, Freitas MLDO, Souza RM, Jesus Junior WC, Oliveira JM (2014) Diagrammatic scale for assessment of bacterial blight in coffee leaves. J Phytopathol 162(11–12):801–810. https://doi.org/10.1111/jph.12272

    Article  Google Scholar 

  • Belan LL, Jesus Junior WC, Souza AF, Zambolim L, Tomaz MA, Alves FR et al (2015) Monitoring of leaf rust in conilon coffee clones to improve fungicide use. Australas Plant Pathol 44(1):5–12. https://doi.org/10.1007/s13313-014-0310-y

    Article  CAS  Google Scholar 

  • Belan LL, de Jesus Junior WC, de Souza AF et al (2020a) Management of coffee leaf rust in Coffea canephora based on disease monitoring reduces fungicide use and management cost. Eur J Plant Pathol 156:683–694. https://doi.org/10.1007/s10658-019-01917-6

    Article  CAS  Google Scholar 

  • Belan LL, Belan LL, Rafael AD, Gomes CAG, Alves FR, Jesus WC, Moraes WB (2020b) Standard area diagram with color photographs to estimate the severity of coffee leaf rust in Coffea canephora. Crop Prot 130:9. https://doi.org/10.1016/j.cropro.2020.105077

    Article  Google Scholar 

  • Campbell CL, Madden LV (1990) Introduction to plant disease epidemiology. Wiley, New York

    Google Scholar 

  • Capucho AS, Zambolim L, Duarte HSS, Vaz GRO (2011) Development and validation of a standard area diagram set to estimate severity of leaf rust in Coffea arabica and C. canephora. Plant Pathol 60(6):1144–1150. https://doi.org/10.1111/j.1365-3059.2011.02472.x

    Article  Google Scholar 

  • Capucho AS, Zambolim L, Cabral PGC, Maciel-Zambolim E, Caixeta ET (2012) Climate favourability to leaf rust in Conilon coffee. Australas Plant Pathol. https://doi.org/10.1007/s13313-012-0187-6

    Article  Google Scholar 

  • Capucho AS, Zambolim L, Lopes UN, Milagres NS (2013) Chemical control of coffee leaf rust in Coffea canephora cv. conilon. Australas Plant Pathol 42(6):667–673. https://doi.org/10.1007/s13313-013-0242-y

    Article  CAS  Google Scholar 

  • CONAB (2021) Acompanhamento da Safra Brasileira de Café. In: Quarto Levantamento—Safra 2020. Available at http://www.conab.gov.br. Accessed on 06 Jun 2021

  • Custódio AAP, Pozza EA, Custódio AAP, Souza PE, Lima LA, Lima LM (2010) Intensidade da ferrugem e da cercosporiose em cafeeiro quanto à face de exposição das plantas. Coffee Sci 5(3):214–228

    Google Scholar 

  • Del Ponte EM, Pethybridge SJ, Bock CH, Michereff SJ, Machado FJ, Spolti P (2017) Standard area diagrams for aiding severity estimation: scientometrics, pathosystems, and methodological trends in the last 25 years. Phytopathology 107(10):1161–1174. https://doi.org/10.1094/PHYTO-02-17-0069-FI

    Article  PubMed  Google Scholar 

  • FAO (2021) Food and Agriculture Organization of the United Nations. Available at http://www.fao.org/faostat/en/#data/QC/visualize. Accessed on 06 Jun 2021

  • Fassio LH, Silva AES (2007) Importância econômica e social do café conilon. In: Ferrão RG, Fonseca AFA, Bragança SM, Ferrão MAG, Muner LH (eds) café conilon. Incaper, Vitória, pp 37–49

    Google Scholar 

  • Ferrão RG, Fonseca AFA, Ferrão MAG, De Muner LH (2019) Conilon Coffee: the Coffea canephora produced in Brazil, 3rd edn. INCAPER, Vitoria

    Google Scholar 

  • Lima PC (1979) Método de amostragem para a avaliação do índice de infecção da ferrugem do cafeeiro (Hemileia vastatrix, Berk. E Br.). Tese (Mestrado em Estatística e Experimentação Agrícola). Escola Superior de Agricultura “Luiz de Queiróz,” Piracicaba

    Google Scholar 

  • Lin LI (1989) A concordance correlation coefficient to evaluate reproducibility. Biometrics 45(1):255–268. https://doi.org/10.2307/2532051

    Article  CAS  Google Scholar 

  • Lin LI, Hedayat AS, Sinha B, Yang M (2002) Statistical methods in assessing agreement: models, issues, and tools. J Am Stat Assoc 97(457):257–270. https://doi.org/10.1198/016214502753479392

    Article  Google Scholar 

  • Michereff SJ, Andrade DEGT, Noronha MA (2006) Elaboration and validation of diagrammatic key to evaluate leaf smut severity in cowpea. Summa Phytopathol 32(1):51–56

    Article  Google Scholar 

  • Nita M, Ellis MA, Madden LV (2003) Reliability and accuracy of visual estimation of Phomopsis leaf blight of strawberry. Phytopathology 93(8):995–1005. https://doi.org/10.1094/PHYTO.2003.93.8.995

    Article  CAS  PubMed  Google Scholar 

  • Nutter Junior FW, Schultz PM (1995) Improving the accuracy and precision of disease assessments: selection of methods and use of computer-aided training programs. Can J Plant Path 17(2):174–184. https://doi.org/10.1080/07060669509500709

    Article  Google Scholar 

  • Pinto-Maglio CAF (2006) Cytogenetics of coffee. Braz J Plant Physiol 18(1):37–44. https://doi.org/10.1590/S1677-04202006000100004

    Article  CAS  Google Scholar 

  • Santos CF, Fernandes CF, Silva CM, Mendes TLO, Freire T, Sousa IP et al (2016) Estudo epidemiológico da ferrugem do cafeeiro em três municípios rondonienses. In: Fitopatologia SBD (ed) 49° Congresso Brasileiro de Fitopatologia, Maceió-AL, vol 1. Sociedade Brasileira de Fitopatologia, Brasília

    Google Scholar 

  • Silva MB, Jesus Junior WC (2000) Monitoramento espaço-temporal: uma ferramenta do manejo integrado de doenças. In: Zambolim L (ed) Manejo Integrado de Doenças, Pragas e Plantas Daninhas, vol 1. Suprema Gráfica e Editora, Visconde do Rio Branco., pp 127–168

    Google Scholar 

  • Silva-Acuña R, Maffia LA, Zambolim L, Berger RD (1999) Incidence-severity relationships in the pathosystem Coffea arabica-Hemileia vastatrix. Plant Dis 83(2):186–188. https://doi.org/10.1094/PDIS.1999.83.2.186

    Article  PubMed  Google Scholar 

  • Souza AF, Zambolim L, Jesus Junior WC, Cecon PR (2011) Chemical approaches to manage coffee leaf rust in drip irrigated trees. Australas Plant Pathol 40(3):293–300. https://doi.org/10.1007/s13313-011-0046-x

    Article  CAS  Google Scholar 

  • Stevenson M, Nunes T, Sanchez J, Thornton R, Reiczigel J, Robison-Cox J et al (2012) epiR: an R package for the analysis of epidemiological data. The Comprehensive R Archive Network website. Available at http://CRAN.R-project.org/package=epiR. Acessed on 28 Aug 2017. R package version 0.9–43

  • USDA (2021) United States Department of Agriculture. Production. Available at https://apps.fas.usda.gov/psdonline/app/index.html#/app/downloads. Accessed on 06 June 2021

  • Vale FXR, Jesus Junior WC, Liberato JR, Souza CA (2004) Quantificação de doenças e do crescimento do hospedeiro. In: Vale FXR, Jesus Junior WC, Zambolim L (eds) Epidemiologia aplicada ao manejo de doenças de plantas, vol 1. Perfil Editora, Belo Horizonte, pp 89–126

    Google Scholar 

  • Ventura J, Lima IDM, Costa H (2019) Conilon coffee disease management. In: Ferrão RG, Fonseca AFA, Ferrão MAG, De Muner LH (eds) Conilon Coffee: the Coffea canephora produced in Brazil, 3rd edn. Incaper, Vitória, pp 535–591

    Google Scholar 

  • Verdin Filho AC, Ferrão RG, Ferrão MAG, Silveira JSM, Volpi PS, da Fonseca AFA et al (2009) Poda programada de ciclo para o café conilon. In Embrapa Café-Artigo em anais de congresso (ALICE). SIMPÓSIO DE PESQUISA DOS CAFÉS DO BRASIL, 6., 2009, Vitória. Inovação científica, competitividade e mudanças climáticas: anais. Consórcio Pesquisa Café, Vitória

    Google Scholar 

  • Verdin Filho AC, Tomaz MA, Ferrão RG, Ferrão MAG, da Fonseca AFA, Rodrigues WN (2014) Conilon coffee yield using the programmed pruning cycle and different cultivation densities. Coffee Sci 9(4):489–494

    Google Scholar 

  • Zambolim L (1997) Café: doenças causadas por fungos, bactérias e vírus, doenças causadas por nematoides. In: Vale FXR, Zambolim L (eds) Controle de doenças de plantas: grandes culturas, vol 1. UFV, Viçosa

    Google Scholar 

  • Zambolim L (2016) Current status and management of coffee leaf rust in Brazil. Trop Plant Pathol 41(1):1–8. https://doi.org/10.1007/s40858-016-0065-9

    Article  Google Scholar 

  • Zambolim L, Sobreira DG, Souza AFDE, Costa H, Zambolim L (2009) Manejo integrado das doenças do conilon (Coffea canephora). In: Zambolim L (ed) Tecnologias para a produção do café conilon. UFV, Viçosa, pp 1–46

    Google Scholar 

Download references

Acknowledgements

This research was supported by the Fundação de Amparo à Pesquisa e Inovação do Espírito Santo (FAPES) [1006/2015] and Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) [300280/2016-5].

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Correspondence to Willian Bucker Moraes.

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Belan, L.L., Belan, L.L., Satiro, L.S. et al. A comparison of sampling methods to accurately estimate the incidence of leaf rust on conilon coffee. Australasian Plant Pathol. 50, 729–737 (2021). https://doi.org/10.1007/s13313-021-00823-y

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