Skip to main content
Log in

Characterization of the archaeal and fungal diversity associated with gypsum efflorescences on the walls of the decorated Sorcerer’s prehistoric cave

  • Original Article
  • Published:
Annals of Microbiology Aims and scope Submit manuscript

Abstract

Purpose

This study focuses on analysis of the archaeal and fungal diversity associated with gypsum efflorescences damaging the walls of the Sorcerer’s prehistoric cave registered as a world cultural heritage site.

Method

Archaeal 16S rDNA and fungal internal transcribed spacer (ITS) clone libraries were constructed and analysed.

Results

Two thaumarchaeotal OTUs belonging to the Nitrososphaeraceae family dominated the archaeal community (100% of clones). Nitrososphaeraceae are obligate aerobic, chemolithoautotrophic organisms that derive their energy from the oxidation of ammonia and may contribute to primary productivity in the cave. Seven fungal OTUs belonging to Ascomycota and one belonging to Basidiomycota were present. The Cordycipitaceae family, mainly represented by entomophilous fungi, dominated the analysis (66.7% of clones).

Conclusion

We show that archaeal and fungal OTUs are associated with gypsum efflorescences damaging the walls of the Sorcerer’s cave. The role of these microorganisms in the deterioration of the walls of the cave remains to be determined.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1

Similar content being viewed by others

References

  • Aguilera-Cogley VA, Berbegal M, Català S, Brentu FC, Armengol J, Vicent A (2017) Characterization of Mycosphaerellaceae species associated with citrus greasy spot in Panama and Spain. PLoS One 12(12):e0189585

    Article  Google Scholar 

  • Anda D, Krett G, Makk J, Márialigeti K, Mádl-Szőnyi J, Borsodi AK (2017) Comparison of bacterial and archaeal communities from different habitats of the hypogenic Molnár János Cave of the Buda Thermal Karst System (Hungary). J Cave Karst Stud 79:113–121

    Article  CAS  Google Scholar 

  • Balasingham S, Chalkias S, Balasingham A, Saul Z, Wickes BL, Sutton DA (2011) A case of bovine valve endocarditis caused by Engyodontium album. Med Mycol 49:430–434

    Article  Google Scholar 

  • Barton HA, Jurado V (2007) What’s up down there? Microbial diversity in caves. Microbe 2:132–138

    Google Scholar 

  • Barton HA, Giarrizzo JG, Suarez P, Robertson CE, Broering MJ, Banks ED et al (2014) Microbial diversity in a Venezuelan orthoquartzite cave is dominated by the Chloroflexi (Class Ktedonobacterales) and Thaumarchaeota Group I.1c. Front Microbiol 5:615

    Article  Google Scholar 

  • Bastian F, Alabouvette C, Saiz-Jimenez C (2009) The impact of arthropods on fungal community structure in Lascaux Cave. J Appl Microbiol 106:1456–1462

    Article  CAS  Google Scholar 

  • Benson CA, Bizzoco RW, Lipson DA, Kelley ST (2011) Microbial diversity in nonsulfur, sulfur and iron geothermal steam vents. FEMS Microbiol Ecol 76:74–88

    Article  CAS  Google Scholar 

  • Brochier-Armanet C, Boussau B, Gribaldo S, Forterre P (2008) Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nat Rev Microbiol 6:245–252

    Article  CAS  Google Scholar 

  • Chamley H (2003) Weathering of prehistoric rock-art caves. In: Chamley H (ed) Geosciences, Environment and Man. Elsevier Science Ltd, Amsterdam, pp 396–400

    Google Scholar 

  • Chelius MK, Moore JC (2004) Molecular phylogenetic analysis of archaea and bacteria in Wind Cave, South Dakota. Geomicrobiol J 21:123–134

    Article  CAS  Google Scholar 

  • Church MJ, DeLong EF, Ducklow HW, Karner MB, Preston CM, Karl DM (2003) Abundance and distribution of planktonic archaea and bacteria in the waters west of the Antarctic peninsula. Limnol Oceanogr 48:1893–1902

    Article  Google Scholar 

  • de Almeida DAC, Gusmão LFP, Miller AN (2016) Taxonomy and molecular phylogeny of Diatrypaceae (Ascomycota, Xylariales) species from the Brazilian semi-arid region, including four new species. Mycol Prog 15:1–27

    Article  Google Scholar 

  • Delluc B, Delluc G, Guichard F (1987) La grotte ornée de Saint-Cirq (Dordogne). Bulletin de la Société préhistorique française 84:364–393

    Article  Google Scholar 

  • Ettenauer J, Sterflinger K, Piñar G (2010) Cultivation and molecular monitoring of halophilic microorganisms inhabiting an extreme environment presented by a salt-attacked monument. Int J Astrobiol 9:59–72

    Article  CAS  Google Scholar 

  • Gantner S, Andersson AF, Alonso-Sáez L, Bertilsson S (2011) Novel primers for 16S rRNAbased archaeal community analyses in environmental samples. J Microbiol Methods 84:12–18

    Article  CAS  Google Scholar 

  • Goettel MS, Hajek AE, Siegel JP, Evans HC (2001) Fungi as biocontrol agents: Progress, problems and potential. In: Butt TM, Jackson C, Magan N (eds) Fungi as biocontrol agents: progress problems and potential. CABI Press, Wallingford, p 347

    Chapter  Google Scholar 

  • Gurulingappa P, McGee P, Sword GA (2011) In vitro and in planta compatibility of insecticides and the endophytic entomopathogen, Lecanicillium lecanii. Mycopathologia 172:161–168

    Article  CAS  Google Scholar 

  • Hathaway JJM, Sinsabaugh RL, De Lurdes M, Dapkevicius NE, Northup DE (2014) Diversity of ammonia oxidation (amoA) and nitrogen fixation (nifH) genes in lava caves of Terceria, Azores, Portugal. Geomicrobiol J 31:221–235

    Article  Google Scholar 

  • Humber RA, Hansen KS (2005) Catalog of isolates. ARSEF USDA-ARS collection of entomopathogenic fungal cultures, Ithaca, NY. http://arsef.fpsnl.cornell.edu. Accessed Sept 2018

  • Jarrell KF, Walters AD, Bochiwal C, Borgia JM, Dickinson T, Chong JP (2011) Major players on the microbial stage: why archaea are important. Microbiology 157:919–936

    Article  CAS  Google Scholar 

  • Jiang JR, Cai L, Liu F (2017) Oligotrophic fungi from a carbonate cave, with three new species of Cephalotrichum. Mycology 8:164–177

    Article  CAS  Google Scholar 

  • Karnay G, Aujoulat N, Konik S, Mauroux B, Pluchery E, Turq A (1999) Notice explicative de la feuille Le Bugue à 1/50000. In: BRGM (ed) Carte géologique de la France à 1/50000. Service géologique national, p 86

  • Kemp PF, Aller JY (2004) Estimating prokaryotic diversity: when are 16S rDNA libraries large enough? Limnol Oceanogr Methods:114–112

    Google Scholar 

  • Krakova L, De Leo F, Bruno L, Pangallo D, Urzì C (2015) Complex bacterial diversity in the white biofilms of the catacombs of St. Callixtus in Rome evidenced by different investigation strategies. Environ Microbiol 17:1738–1752

    Article  CAS  Google Scholar 

  • Laiz L, Miller AZ, Jurado V, Akatova E, Sanchez-Moral S, Gonzalez JM, Dionísio A, Macedo MF, Saiz-Jimenez C (2009) Isolation of five Rubrobacter strains from biodeteriorated monuments. Naturwissenschaften 96:71–79

    Article  CAS  Google Scholar 

  • Lavoie KH, Northup DE, Barton HA (2010) Microbe–mineral interactions: cave geomicrobiology. In: Jain SK, Khan AA, Rai MK (eds) Geomicrobiology. Science Publishers Enfield, New Hampshire, pp 1–45

    Google Scholar 

  • Legatzki A, Ortiz M, Neilson JW, Dominguez S, Andersen GL, Toomey RS, Pryor BM, Pierson LS, Maier RM (2011) Bacterial and archaeal community structure of two adjacent calcite speleothems in Kartchner Caverns, Arizona, USA. Geomicrobiol J 28:99–117

    Article  Google Scholar 

  • Lepinay C, Mihajlovski A, Seyer D, Touron S, Bousta F, Di Martino P (2017) Biofilm communities survey at the areas of salt crystallization on the walls of a decorated shelter listed at UNESCO World cultural Heritage. Int Biodeterior Biodegradation 122:116–127

    Article  CAS  Google Scholar 

  • Lepinay C, Mihajlovski A, Touron S, Seyer D, Bousta F, Di Martino P (2018) Bacterial diversity associated with saline efflorescences damaging the walls of a French decorated prehistoric cave registered as a World Cultural Heritage Site. Int Biodeterior Biodegradation 130:55–64

    Article  CAS  Google Scholar 

  • Macalady JL, Lyon EH, Koffman B, Albertson LK, Meyer K, Galdenzi S, Mariani S (2006) Dominant microbial populations in limestone-corroding stream biofilms, Frasassi cave system, Italy. Appl Environ Microbiol 72:5596–5609

    Article  CAS  Google Scholar 

  • Martens-Habbena W, Berube PM, Urakawa H, de la Torre JR, Stahl DA (2009) Ammonia oxidation kinetics determine niche separation of nitrifying archaea and bacteria. Nature 461:976–979

    Article  CAS  Google Scholar 

  • Martin-Sanchez PM, Miller AZ, Saiz-Jimenez C (2015) Lascaux Cave: an example of fragile ecological balance in subterranean environments. In: Engel AS (ed) Microbial life of cave systems. Walter de Gruyter GmbH & Co KG, Berlin, pp 279–301

    Google Scholar 

  • Meng H, Luo L, Chan HW, Katayama Y, Ji-Dong Gu JD (2016) Higher diversity and abundance of ammonia-oxidizing archaea than bacteria detected at the Bayon Temple of Angkor Thom in Cambodia. Int Biodeterior Biodegradation 115:234–243

    Article  CAS  Google Scholar 

  • Meng H, Katayama Y, Gu JD (2017) More wide occurrence and dominance of ammonia-oxidizing archaea than bacteria at three Angkor sandstone temples of Bayon, Phnom Krom and Wat Athvea in Cambodia. Int Biodeterior Biodegradation 117:78–88

    Article  CAS  Google Scholar 

  • Menzies J, Turkington T (2015) An overview of the ergot (Claviceps purpurea) issue in western Canada: challenges and solutions. Can J Plant Pathol 37:40–51

    Article  Google Scholar 

  • Miller AZ, Hernández-Mariné M, Jurado V, Dionísio A, Barquinha P, Fortunato E, Afonso MJ, Chaminé HI, Saiz-Jimenez C (2012) Enigmatic reticulated filaments in subsurface granite. Environ Microbiol Rep 4(6):596–603

    CAS  PubMed  Google Scholar 

  • Northup DE, Barns SM, Yu LE, Spilde MN, Schelble RT, Dano KE, Crossey LJ, Connolly CA, Boston PJ, Natvig DO, Dahm CN (2003) Diverse microbial communities inhabiting ferromanganese deposits in Lechuguilla and Spider Caves. Environ Microbiol 5(11):1071–1086

    Article  Google Scholar 

  • Nováková A (2009) Microscopic fungi isolated from the Domica Cave system (Slovak Karst National Park, Slovakia). A review. Int J Speleol 38:71–82

    Article  Google Scholar 

  • Nucle Tucker DL, Beresford CH, Sigler L, Rogers K (2004) Disseminated Beauveria bassiana infection in a patient with acute lymphoblastic leukemia. J Clin Microbiol 42:5412–5414

    Article  Google Scholar 

  • Ochsenreiter T, Selezi D, Quaiser A, Bonch-Osmolovskaya L, Schleper C (2003) Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR. Environ Microbiol 5:787–797

    Article  CAS  Google Scholar 

  • Ortiz M, Neilson JW, Nelson WM, Legatzki A, Byrne A, Yu Y, Wing RA, Soderlund CA, Pryor BM, Pierson LS 3rd, Maier RM (2013) Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ. Microb Ecol 65(2):371–383

    Article  Google Scholar 

  • Ortiz M, Legatzki A, Neilson JW, Fryslie B, Nelson WM, Wing RA et al (2014) Making a living while starving in the dark: metagenomic insights into the energy dynamics of a carbonate cave. ISME J 8:478–491

    Article  CAS  Google Scholar 

  • Pester M, Schleper C, Wagner M (2011) The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology. Curr Opin Microbiol 14(3):300–306

    Article  CAS  Google Scholar 

  • Pigeaud R, Berrouet F, Bougard E, Paitier H, Pommier V, Bonic P (2012) La grotte du sorcier à Saint-Cirq-du-Bugue (Dordogne, France): nouvelles lectures. Bilan des campagnes 2010 et 2011. PALEO, Revue d'archéologie préhistorique 23:223–248

    Google Scholar 

  • Piñar G, Ettenauer J, Sterflinger K (2014) “La vie en rose”: a review of the rosy discoloration of subsurface monuments. In: Saiz-Jimenez C (ed) The conservation of subterranean cultural heritage. CRC Press, Taylor & Francis Group, London, pp 113–124

    Chapter  Google Scholar 

  • Porca E, Jurado V, Žgur-Bertok D, Saiz-Jimenez C, Pašić L (2012) Comparative analysis of yellow microbial communities growing on the walls of geographically distinct caves indicates a common core of microorganisms involved in their formation. FEMS Microbiol Ecol 81:255–266

    Article  CAS  Google Scholar 

  • Pusz W, Ogórek R, Knapik R, Kozak B, Bujak H (2015) The occurrence of fungi in the recently discovered Jarkowicka Cave in the Karkonosze Mts. (Poland). Geomicrobiol J 32:59–67

    Article  Google Scholar 

  • Reitschuler C, Lins P, Wagner AO, Illmer P (2014) Cultivation of moonmilk-born non-extremophilic Thaum and Euryarchaeota in mixed culture. Anaerobe 29:73–79

    Article  CAS  Google Scholar 

  • Reitschuler C, Spötl C, Hofmann K, Wagner AO, Illmer P (2016) Archaeal distribution in Moonmilk deposits from Alpine caves and their Ecophysiological potential. Microb Ecol 71:686–699

    Article  CAS  Google Scholar 

  • Riquelme C, Hathaway JJM, Dapkevicius M d LNE, Miller AZ, Kooser A, Northup DE, Jurado V, Fernandez O, Saiz-Jimenez C, Cheeptham N (2015) Actinobacterial diversity in volcanic caves and associated geomicrobiological interactions. Front Microbiol 6:1342

    Article  Google Scholar 

  • Ruibal C, Platas G, Bills GF (2008) High diversity and morphological convergence among melanised fungi from rock formations in the Central Mountain System of Spain. Persoonia 21:93–110

    Article  CAS  Google Scholar 

  • Saiz-Jimenez C (2015) The microbiology of show caves, mines, tunnels, and tombs: implications for management and conservation. In: Engel AS (ed) Microbial life of cave systems. Walter de Gruyter GmbH & Co KG, Berlin, pp 231–261

    Google Scholar 

  • Saiz-Jimenez C, Cuezva S, Jurado V, Fernandez-Cortes A, Porca E, Benavente D, Cañaveras JC, Sanchez-Moral S (2011) Paleolithic art in peril: policy and science collide at Altamira Cave. Science 334:42–43

    Article  CAS  Google Scholar 

  • Saiz-Jimenez C, Miller AZ, Martin-Sanchez PM, Hernandez-Marine M (2012) Uncovering the origin of the black stains in Lascaux Cave in France. Environ Microbiol 14:3220–3231

    Article  Google Scholar 

  • Sanchez-Moral S, Luque L, Cuezva S, Soler V, Benavente D, Laiz L, Gonzalez JM, Saiz-Jimenez C (2005) Deterioration of building materials in Roman catacombs: the influence of visitors. Sci Total Environ 349(1-3):260–276

    Article  CAS  Google Scholar 

  • Schleper C, Holben W, Klenk HP (1997) Recovery of crenarchaeotal ribosomal DNA sequences from freshwater-lake sediments. Appl Environ Microbiol 63:321–323

    CAS  PubMed  PubMed Central  Google Scholar 

  • Siegel J, Shadduck J (1990) Safety of microbial insecticides to vertebrates: humans. In: Laird M, Lacey LA, Davidson EW (eds) Safety of microbial insecticides. CRC Press, Boca Raton, pp 102–112

    Google Scholar 

  • Stahl DA, Amann R (1991) Development and application of nucleic acid probes in bacterial systematics. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, Chichester

    Google Scholar 

  • Sung GH, Sung JM, Hywel-Jones, Spatafora (2007) Ophiocordycipitaceae. Stud Mycol 57:35

    Article  Google Scholar 

  • Takei K, Moser DP, DeFlaun M, Onstott TC, Fredrickson JK (2001) Archaeal diversity in waters from Deep South African gold mines. Appl Environ Microbiol 67:5750–5760

    Article  Google Scholar 

  • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680

    Article  CAS  Google Scholar 

  • Vanderwolf KJ, Malloch D, McAlpine DF, Forbes GJ (2013) A world review of fungi, yeasts, and slime molds in caves. Int J Speleol 42:77–96

    Article  Google Scholar 

  • Vasanthakumara A, DeAraujoa A, Mazurekb J, Schillingb M, Mitchell R (2013) Microbiological survey for analysis of the brown spots on the walls of the tomb of King Tutankhamu. Int Biodeterior Biodegrad 79:56–63

    Article  Google Scholar 

  • Wright ES, Safak Yilmaz L, Noguera DR (2012) DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences. Appl Environ Microbiol 78:717–725

    Article  CAS  Google Scholar 

  • Wu Y, Tan L, Liu W, Wang B, Wang J, Cai Y, Lin X (2015) Profiling bacterial diversity in a limestone cave of the western Loess Plateau of China. Front Microbiol 6:244

    PubMed  PubMed Central  Google Scholar 

  • Yarza P, Richter M, Peplies J, Euzeby J, Amann R, Schleifer KH, Ludwig W, Glöckner FO, Rosselló-Móra R (2008) The all-species living tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol 31:241–250

    Article  CAS  Google Scholar 

  • Zhang ZF, Liu F, Zhou X, Liu XZ, Liu SJ, Cai L (2017) Culturable mycobiota from karst caves in China, with descriptions of 20 new species. Persoonia 39:1–31

    Article  Google Scholar 

  • Zhou J, Bruns MA, Tiedje JM (1996) DNA recovery from soils of diverse composition. Appl Environ Microbiol 62:316–322

    CAS  PubMed  PubMed Central  Google Scholar 

  • Zimmermann G (2007a) Review on safety of the entomopathogenic fungi Beauveria bassiana and Beauveria brongniartii. Biocont Sci Technol 17:553–596

    Article  Google Scholar 

  • Zimmermann G (2007b) Review on safety of the Entomopathogenic fungus Metarhizium anisopliae. Biocont Sci Technol 17:879–920

    Article  Google Scholar 

  • Zimmermann G (2008) The entomopathogenic fungi Isaria farinosa (formerly Paecilomyces farinosus) and the Isaria fumosorosea species complex (formerly Paecilomyces fumosoroseus): biology, ecology and use in biological control. Biocont Sci Technol 18:865–901

    Article  Google Scholar 

Download references

Acknowledgements

We thank Jean-Max Touron (owner of the Sorcerer’s Cave) and Jean-Christophe Portais, who allowed us access and sample the cave. We thank Alexandre François and Mareva Sandou for the technical assistance. The final manuscript has been improved by BioMedES UK (www.biomedes.biz).

Funding

This study was funded, in part, by a grant from the Labex Patrima and by a financial support of the “Ministere de la Culture et de la Communication”. This work was supported by the French minister of culture and communication and by the foundation PATRIMA.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Agnès Mihajlovski.

Ethics declarations

Conflict of interest

The authors declare that they have no conflict of interest.

Research involving human participants and/or animals

N/A

Informed consent

N/A

Additional information

Publisher’s note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Mihajlovski, A., Lepinay, C., Mirval, AL. et al. Characterization of the archaeal and fungal diversity associated with gypsum efflorescences on the walls of the decorated Sorcerer’s prehistoric cave. Ann Microbiol 69, 1071–1078 (2019). https://doi.org/10.1007/s13213-019-01506-2

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s13213-019-01506-2

Keywords

Navigation