Abstract
Bio-mediated geotechnology refers to the technology that utilizes various types of microbial processes to improve the hydro-mechanical behavior of soil and rock, aiming for the prevention and mitigation of geoengineering problems. This paper provides a detailed and comprehensive review of bio-mediated geotechnologies, aiming to enhance understanding in this field. The review encompasses mechanisms, influencing factors, engineering properties, applications, as well as challenges and prospects associated with bio-mediated geotechnologies. Three typical bio-mediated geotechnologies are examined: biomineralization, biofilm, and biogas, with a specific focus on microbially induced calcium carbonate precipitation (MICP). Key factors affecting MICP efficacy, including bacteria species, bacteria concentration, temperature, pH, cementation solution, soil properties, and treatment strategies, are elaborated upon. The paper highlights the significant improvements in mechanical strength, permeability reduction, and erosion resistance achieved through MICP treatment. Furthermore, a wide range of applications for MICP in geotechnical and environmental domains are reviewed, spanning from foundation treatment to geological disaster prevention. Despite its promise, MICP faces challenges such as environmental impact mitigation, uniform distribution, and large-scale application. The paper concludes by discussing future research directions, emphasizing interdisciplinary collaborations and innovative approaches to address these challenges and fully realize the potential of MICP in geotechnical engineering applications.
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References
Achal V, Mukherjee A, Basu P, Reddy MS (2009) Strain improvement of Sporosarcina pasteurii for enhanced urease and calcite production. J Ind Microbiol Biotechnol 36(7):981–988
Achal V, Pan X, Zhang D (2011) Remediation of copper-contaminated soil by Kocuria flava cr1, based on microbially induced calcite precipitation. Ecol Eng 37(10):1601–1605
Ahenkorah I, Rahman MM, Karim MR, Beecham S (2021) Enzyme induced calcium carbonate precipitation and its engineering application: a systematic review and meta-analysis. Constr Build Mater 308:125000
Al Qabany A, Soga K (2013) Effect of chemical treatment used in micp on engineering properties of cemented soils. Geotechnique 63(4):331
Al Qabany A, Soga K, Santamarina C (2012) Factors affecting efficiency of microbially induced calcite precipitation. J Geotech Geoenviron Eng 138(8):992–1001. https://doi.org/10.1061/(ASCE)GT.1943-5606.0000666
Alba J, Audibert J (1999) Pile design in calcareous and carbonaceous granular materials, and historic review. In: Proceedings of the 2nd international conference on engineering for calcareous sediments. AA Balkema, Rotterdam, pp 29–44
Almajed A, Khodadadi Tirkolaei H, Kavazanjian E Jr (2018) Baseline investigation on enzyme-induced calcium carbonate precipitation. J Geotech Geoenviron Eng 144(11):04018081
Al-Salloum Y, Abbas H, Sheikh Q, Hadi S, Alsayed S, Almusallam T (2017) Effect of some biotic factors on microbially-induced calcite precipitation in cement mortar. Saudi J Biol Sci 24(2):286–294
Al-Thawadi S (2008) High strength in-situ biocementation of soil by calcite precipitating locally isolated ureolytic bacteria. Murdoch University
Arboleda-Monsalve LG, Zapata-Medina DG, Galeano-Parra DI (2019) Compressibility of biocemented loose sands under constant rate of strain, loading, and pseudo k0-triaxial conditions. Soils Found 59(5):1440–1455
Bahmani M, Noorzad A, Hamedi J, Sali F (2017) The role of Bacillus pasteurii on the change of parameters of sands according to temperature compression and wind erosion resistance. J CleanWAS 1(2):1–5
Bang SC, Min SH, Bang SS (2011) Application of microbiologically induced soil stabilization technique for dust suppression. Int J Geo-Eng 3(2):27–37
Bansal R, Dhami NK, Mukherjee A, Reddy MS (2016) Biocalcification by halophilic bacteria for remediation of concrete structures in marine environment. J Ind Microbiol Biotechnol 43(11):1497–1505
Baveye P, Vandevivere P, Hoyle BL, DeLeo PC, de Lozada DS (1998) Environmental impact and mechanisms of the biological clogging of saturated soils and aquifer materials. Crit Rev Environ Sci Technol 28(2):123–191
Benhelal E, Zahedi G, Shamsaei E, Bahadori A (2013) Global strategies and potentials to curb co2 emissions in cement industry. J Cleaner Prod 51:142–161
Blakeley RL, Zerner B (1984) Jack bean urease: the first nickel enzyme. J Mol Catal 23(2–3):263–292
Blauw M, Lambert J, Latil M-N (2009) Biosealing: a method for in situ sealing of leakages. In: Proceedings of the international symposium on ground improvement technologies and case histories, ISGI, pp 125–130
Blundell N, Cuthbert M, Riley M, Handley-Sidhu S, Renshaw J (2012) Engineering biomineralised groundwater flow barriers for inhibiting radionuclide transport in fractured rocks. EGUGA, p 4605
Bora R, Maini B, Chakma A (2000) Flow visualization studies of solution gas drive process in heavy oil reservoirs using a glass micromodel. SPE Reserv Eval Eng 3(03):224–229
Boskey AL (1998) Biomineralization: conflicts, challenges, and opportunities. J Cell Biochem 72(S30–31):83–91
Bucci NA, Ghazanfari E, Lu H (2016) Microbially-induced calcite precipitation for sealing rock fractures. Geo-Chicago 2016:558–567
Canakci H, Sidik W, Halil Kilic I (2015) Effect of bacterial calcium carbonate precipitation on compressibility and shear strength of organic soil. Soils Found 55(5):1211–1221. https://doi.org/10.1016/j.sandf.2015.09.020
Castanier S, Le Métayer-Levrel G, Perthuisot J-P (1999) Ca-carbonates precipitation and limestone genesis—the microbiogeologist point of view. Sediment Geol 126(1–4):9–23
Castanier S, Le Metayer-Levrel G, Perthuisot J-P (2000) Bacterial roles in the precipitation of carbonate minerals. Microbial sediments. Springer, Berlin, pp 32–39
Castro-Alonso MJ, Montañez-Hernandez LE, Sanchez-Muñoz MA, Macias Franco MR, Narayanasamy R, Balagurusamy N (2019) Microbially induced calcium carbonate precipitation (micp) and its potential in bioconcrete: microbiological and molecular concepts. Front Mater 6:126
Cheng L, Cord-Ruwisch R (2012) In situ soil cementation with ureolytic bacteria by surface percolation. Ecol Eng 42:64–72
Cheng L, Cord-Ruwisch R (2014) Upscaling effects of soil improvement by microbially induced calcite precipitation by surface percolation. Geomicrobiol J 31(5):396–406
Cheng L, Qian C-x, Wang R-x, J-y WANG (2007a) Study on kinetics and morphology of formation of caco~ 3 crystal induced by carbonate-mineralization microbe. J Funct Mater 38(9):1511
Cheng L, Qian C, Wang R, Wang J (2007b) Study on the mechanism of calcium carbonate formation induced by carbonate-mineralization microbe. Acta Chim Sin 65(19):2133–2138
Cheng L, Cord-Ruwisch R, Shahin MA (2013a) Cementation of sand soil by microbially induced calcite precipitation at various degrees of saturation. Can Geotech J 50(1):81–90
Cheng X, Ma Q, Yang Z, Zhang Z, Li M (2013b) Dynamic response of liquefiable sand foundation improved by bio-grouting. Chin J Geotech Eng 35(8):1486–1495
Cheng L, Shahin MA, Mujah D (2017) Influence of key environmental conditions on microbially induced cementation for soil stabilization. J Geotech Geoenviron Eng 143(1):04016083
Cheng L, Shahin MA, Chu J (2019) Soil bio-cementation using a new one-phase low-ph injection method. Acta Geotech 14(3):615–626
Cheng L, Shahin M, Cord-Ruwisch R, Addis M, Hartanto T, Elms C (2014) Soil stabilisation by microbial-induced calcite precipitation (micp): Investigation into some physical and environmental aspects. In: 7th International congress on environmental geotechnics: iceg2014. Engineers Australia, p 1105
Choi S-G, Wang K, Chu J (2016) Properties of biocemented, fiber reinforced sand. Constr Build Mater 120:623–629
Choi S-G, Wang K, Wen Z, Chu J (2017) Mortar crack repair using microbial induced calcite precipitation method. Cem Concr Compos 83:209–221
Choi S-G, Chang I, Lee M, Lee J-H, Han J-T, Kwon T-H (2020) Review on geotechnical engineering properties of sands treated by microbially induced calcium carbonate precipitation (micp) and biopolymers. Constr Build Mater. https://doi.org/10.1016/j.conbuildmat.2020.118415
Chou C-W, Seagren EA, Aydilek AH, Lai M (2011) Biocalcification of sand through ureolysis. J Geotech Geoenviron Eng 137(12):1179–1189
Chu J, Ivanov V, Stabnikov V, Li B (2013) Microbial method for construction of an aquaculture pond in sand. Geotechnique 63(10):871
Chu J, Ivanov V, Naeimi M, Stabnikov V, Liu H-L (2014) Optimization of calcium-based bioclogging and biocementation of sand. Acta Geotech 9(2):277–285
Costerton JW, Stewart PS, Greenberg EP (1999) Bacterial biofilms: a common cause of persistent infections. Science 284(5418):1318–1322
Cui M-J, Zheng J-J, Lai H-J (2017a) Effect of method of biological injection on dynamic behavior for bio-cemented sand. Rock Soil Mech 38(11):3173–3178
Cui M-J, Zheng J-J, Zhang R-J, Lai H-J, Zhang J (2017b) Influence of cementation level on the strength behaviour of bio-cemented sand. Acta Geotech 12(5):971–986
Cunningham AB, Characklis WG, Abedeen F, Crawford D (1991) Influence of biofilm accumulation on porous media hydrodynamics. Environ Sci Technol 25(7):1305–1311
Cunningham A, Warwood B, Sturman P, Horrigan K, James G, Costerton JW, Hiebert R (1997) Biofilm processes in porous media-practical applications. Microbiol Terres Deep subsurf:325–344
Cunningham AB, Sharp RR, Hiebert R, James G (2003) Subsurface biofilm barriers for the containment and remediation of contaminated groundwater. Biorem J 7(3–4):151–164
Cunningham AB, Sharp RR, Caccavo F Jr, Gerlach R (2007) Effects of starvation on bacterial transport through porous media. Adv Water Resour 30(6–7):1583–1592
Cunningham AB, Phillips AJ, Troyer E, Lauchnor R, Hiebert R, Gerlach R, Spangler LH (2014) Wellbore leakage mitigation using engineered biomineralization. Energy Procedia 63:4612–4619
Cussac V, Ferrero RL, Labigne A (1992) Expression of helicobacter pylori urease genes in escherichia coli grown under nitrogen-limiting conditions. J Bacteriol 174(8):2466–2473
Cuthbert MO, McMillan LA, Handley-Sidhu S, Riley MS, Tobler DJ, Phoenix VR (2013) A field and modeling study of fractured rock permeability reduction using microbially induced calcite precipitation. Environ Sci Technol 47(23):13637–13643
Das N, Kayastha AM, Srivastava PK (2002) Purification and characterization of urease from dehusked pigeonpea (Cajanus cajan L.) seeds. Phytochemistry 61(5):513–521
De Muynck W, De Belie N, Verstraete W (2010) Microbial carbonate precipitation in construction materials: a review. Ecol Eng 36(2):118–136. https://doi.org/10.1016/j.ecoleng.2009.02.006
De Muynck W, Verbeken K, De Belie N, Verstraete W (2013) Influence of temperature on the effectiveness of a biogenic carbonate surface treatment for limestone conservation. Appl Microbiol Biotechnol 97(3):1335–1347
DeJong JT, Kavazanjian E (2019) Bio-mediated and bio-inspired geotechnics. In: Lu N, Mitchell JK (eds) Geotechnical fundamentals for addressing new world challenges. Springer, Cham, pp 193–207. https://doi.org/10.1007/978-3-030-06249-1_7
DeJong JT, Fritzges MB, Nüsslein K (2006) Microbially induced cementation to control sand response to undrained shear. J Geotech Geoenviron Eng 132(11):1381–1392
DeJong JT, Mortensen BM, Martinez BC, Nelson DC (2010) Bio-mediated soil improvement. Ecol Eng 36(2):197–210
Deng H, Luo Y, Deng J, Wu L, Zhang Y, Peng S (2019) Experimental study of improving impermeability and strength of fractured rock by microbial induced carbonate precipitation. Rock Soil Mech 40(9):3542–3548
Dhami NK, Reddy MS, Mukherjee A (2013) Biomineralization of calcium carbonate polymorphs by the bacterial strains isolated from calcareous sites. J Microbiol Biotechnol 23(5):707–714
Dilrukshi R, Kawasaki S (2016) Effective use of plant-derived urease in the field of geoenvironmental. Geotech Eng Civil Environ Eng 6(207):2
El Mountassir G, Lunn RJ, Moir H, MacLachlan E (2014) Hydrodynamic coupling in microbially mediated fracture mineralization: formation of self-organized groundwater flow channels. Water Resour Res 50(1):1–16. https://doi.org/10.1002/2013WR013578
El Mountassir G, Minto JM, van Paassen LA, Salifu E, Lunn RJ (2018) Applications of microbial processes in geotechnical engineering. Advances in applied microbiology, vol 104. Elsevier, Oxford, pp 39–91
Enouy R, Li M, Ioannidis M, Unger A (2011) Gas exsolution and flow during supersaturated water injection in porous media: II. Column experiments and continuum modeling. Adv Water Resour 34(1):15–25
Ercole C, Bozzelli P, Altieri F, Cacchio P, Del Gallo M (2012) Calcium carbonate mineralization: Involvement of extracellular polymeric materials isolated from calcifying bacteria. Microsc Microanal 18(4):829
Erşan YÇ, Belie Nd, Boon N (2015) Microbially induced caco3 precipitation through denitrification: an optimization study in minimal nutrient environment. Biochem Eng J 101:108–118. https://doi.org/10.1016/j.bej.2015.05.006
Fang X, Shen C, Chu J, Wu S, Li Y (2015) An experimental study of coral sand enhanced through microbially-induced precipitation of calcium carbonate. Rock Soil Mech 36(10):2773–2779
Feng Z, Kang H, Yang J (2005) Discussion on grouting technology for crack rock mass. Coal Sci Technol 4:63–66
Ferris F, Stehmeier L, Kantzas A, Mourits F (1997) Bacteriogenic mineral plugging. J Can Pet Technol 36(09)
Fragaszy R, Santamarina JC, Amekudzi A, Assimaki D, Bachus R, Burns S, Cha M, Cho G-C, Cortes D, Dai S (2011) Sustainable development and energy geotechnology—potential roles for geotechnical engineering. KSCE J Civ Eng 15(4):611–621
Fu F, Wang Q (2011) Removal of heavy metal ions from wastewaters: a review. J Environ Manage 92(3):407–418
Fu T, Saracho AC, Haigh SK (2023) Microbially induced carbonate precipitation (micp) for soil strengthening: a comprehensive review. Biogeotechnics 1(1):100002. https://doi.org/10.1016/j.bgtech.2023.100002
Gans J, Wolinsky M, Dunbar J (2005) Computational improvements reveal great bacterial diversity and high metal toxicity in soil. Science 309(5739):1387–1390
Gao Y, Tang X, Chu J, He J (2019) Microbially induced calcite precipitation for seepage control in sandy soil. Geomicrobiol J 36(4):366–375
Ghasemi P, Montoya BM (2022) Field implementation of microbially induced calcium carbonate precipitation for surface erosion reduction of a coastal plain sandy slope. J Geotech Geoenviron Eng 148(9):04022071. https://doi.org/10.1061/(ASCE)GT.1943-5606.0002836
Ghorbanzadeh N, Abduolrahimi S, Forghani A, Farhangi MB (2020) Bioremediation of cadmium in a sandy and a clay soil by microbially induced calcium carbonate precipitation after one week incubation. Arid Land Res Manage 34(3):319–335
Gomez MG, Martinez BC, DeJong JT, Hunt CE, deVlaming LA, Major DW, Dworatzek SM (2015) Field-scale bio-cementation tests to improve sands. Proc Inst Civil Eng Ground Improv 168(3):206–216
Gorospe CM, Han S-H, Kim S-G, Park J-Y, Kang C-H, Jeong J-H, So J-S (2013) Effects of different calcium salts on calcium carbonate crystal formation by Sporosarcina pasteurii kctc 3558. Biotechnol Bioprocess Eng 18(5):903–908
Gowthaman S, Iki T, Nakashima K, Ebina K, Kawasaki S (2019) Feasibility study for slope soil stabilization by microbial induced carbonate precipitation (micp) using indigenous bacteria isolated from cold subarctic region. SN Appl Sci 1(11):1480. https://doi.org/10.1007/s42452-019-1508-y
Greer JA (2018) Biofilm enabled permeability reduction in sands. University of California, Davis
Hamdan NM (2015) Applications of enzyme induced carbonate precipitation (eicp) for soil improvement. Arizona State University, Tempe
Hamdan N, Kavazanjian Jr E, O’donnell S (2013) Carbonate cementation via plant derived urease. In: Proceedings of the 18th international conference on soil mechanics and geotechnical engineering, pp 2–6
Hammes F, Verstraete W (2002) Key roles of ph and calcium metabolism in microbial carbonate precipitation. Rev Environ Sci Biotechnol 1(1):3–7
Han Z, Wang T, Dong Z, Hu Y, Yao Z (2007) Chemical stabilization of mobile dunefields along a highway in the taklimakan desert of china. J Arid Environ 68(2):260–270
Harkes MP, Van Paassen LA, Booster JL, Whiffin VS, van Loosdrecht MC (2010) Fixation and distribution of bacterial activity in sand to induce carbonate precipitation for ground reinforcement. Ecol Eng 36(2):112–117
Hataf N, Jamali R (2018) Effect of fine-grain percent on soil strength properties improved by biological method. Geomicrobiol J 35(8):695–703. https://doi.org/10.1080/01490451.2018.1454554
He J, Chu J (2014) Undrained responses of microbially desaturated sand under monotonic loading. J Geotech Geoenviron Eng 140(5):04014003
He J, Chu J, Ivanov V (2013) Mitigation of liquefaction of saturated sand using biogas. Geotechnique 63(4):267–275
He J, Chu J, Liu H (2014) Undrained shear strength of desaturated loose sand under monotonic shearing. Soils Found 54(4):910–916
Hu Z, Deng Y (2003) Supersaturation control in aragonite synthesis using sparingly soluble calcium sulfate as reactants. J Colloid Interface Sci 266(2):359–365
Hu X, Li D, Peng E, Hou Z, Sheng Y, Chou Y (2020) Long-term sustainability of biogas bubbles in sand. Sci Rep 10(1):1–12
Ismail M, Joer H, Randolph M, Meritt A (2002) Cementation of porous materials using calcite. Geotechnique 52(5):313–324
Ivanov V, Chu J (2008) Applications of microorganisms to geotechnical engineering for bioclogging and biocementation of soil in situ. Rev Environ Sci Biotechnol 7(2):139–153
Ivanov V, Stabnikov V, Zhuang W, Tay J, Tay S (2005) Phosphate removal from the returned liquor of municipal wastewater treatment plant using iron-reducing bacteria. J Appl Microbiol 98(5):1152–1161
Ivanov V, Chu J, Stabnikov V, He J, Naeimi M (2010) Iron-based bio-grout for soil improvement and land reclamation. In: Proceedings of the 2nd international conference on sustainable construction materials and technologies, Italy, pp p415–420
Ivanov V, Stabnikov V, Stabnikova O, Kawasaki S (2019) Environmental safety and biosafety in construction biotechnology. World J Microbiol Biotechnol 35(2):26
Jain S, Mishra PN, Tiwari S, Wang Y, Jiang N, Dash HR, Chang I, Kumar A, Das SK, Scheuermann A, Bore T (2023) Biological perspectives in geotechnics: theoretical developments. Rev Environ Sci Biotechnol 22(4):1093–1130. https://doi.org/10.1007/s11157-023-09671-2
Jakubovskis R, Jankutė A, Urbonavičius J, Gribniak V (2020) Analysis of mechanical performance and durability of self-healing biological concrete. Constr Build Mater 260:119822. https://doi.org/10.1016/j.conbuildmat.2020.119822
Jiang N-J, Soga K (2017) The applicability of microbially induced calcite precipitation (micp) for internal erosion control in gravel–sand mixtures. Géotechnique 67(1):42–55
Jiang N-J, Soga K, Kuo M (2017) Microbially induced carbonate precipitation for seepage-induced internal erosion control in sand–clay mixtures. J Geotech Geoenviron Eng 143(3):04016100
Jiang N-J, Tang C-S, Yin L-Y, Xie Y-H, Shi B (2019) Applicability of microbial calcification method for sandy-slope surface erosion control. J Mater Civ Eng 31(11):04019250
Jongvivatsakul P, Janprasit K, Nuaklong P, Pungrasmi W, Likitlersuang S (2019) Investigation of the crack healing performance in mortar using microbially induced calcium carbonate precipitation (micp) method. Constr Build Mater 212:737–744
Jroundi F, Gómez-Suaga P, Jimenez-Lopez C, González-Muñoz MT, Fernandez-Vivas MA (2012) Stone-isolated carbonatogenic bacteria as inoculants in bioconsolidation treatments for historical limestone. Sci Total Environ 425:89–98
Jroundi F, Gonzalez-Muñoz MT, Garcia-Bueno A, Rodriguez-Navarro C (2014) Consolidation of archaeological gypsum plaster by bacterial biomineralization of calcium carbonate. Acta Biomater 10(9):3844–3854
Kang C-H, Oh SJ, Shin Y, Han S-H, Nam I-H, So J-S (2015) Bioremediation of lead by ureolytic bacteria isolated from soil at abandoned metal mines in south korea. Ecol Eng 74:402–407
Karatas I (2008) Microbiological improvement of the physical properties of soils. Arizona State University, Tempe
Kavazanjian E, Hamdan N (2015) Enzyme induced carbonate precipitation (eicp) columns for ground improvement. Ifcee 2015:2252–2261
Kavazanjian Jr E, Karatas I (2008) Microbiological improvement of the physical properties of soil
Khaliq W, Ehsan MB (2016) Crack healing in concrete using various bio influenced self-healing techniques. Constr Build Mater 102:349–357
Kim J, Park H-D, Chung S (2012) Microfluidic approaches to bacterial biofilm formation. Molecules 17(8):9818–9834
Kim D, Park K, Kim D (2014) Effects of ground conditions on microbial cementation in soils. Materials 7(1):143–156
Kirkland CM, Thane A, Hiebert R, Hyatt R, Kirksey J, Cunningham AB, Gerlach R, Spangler L, Phillips AJ (2020) Addressing wellbore integrity and thief zone permeability using microbially-induced calcium carbonate precipitation (micp): a field demonstration. J Petrol Sci Eng 190:107060
Kitamura M, Konno H, Yasui A, Masuoka H (2002) Controlling factors and mechanism of reactive crystallization of calcium carbonate polymorphs from calcium hydroxide suspensions. J Cryst Growth 236(1–3):323–332
Klausen M, Heydorn A, Ragas P, Lambertsen L, Aaes-Jørgensen A, Molin S, Tolker-Nielsen T (2003) Biofilm formation by Pseudomonas aeruginosa wild type, flagella and type iv pili mutants. Mol Microbiol 48(6):1511–1524
Kou H-l, Wu C-z, Ni P-p, Jang B-A (2020) Assessment of erosion resistance of biocemented sandy slope subjected to wave actions. Appl Ocean Res 105:102401
Krajewska B (2018) Urease-aided calcium carbonate mineralization for engineering applications: a review. J Adv Res 13:59–67
Kralj D, Brečević L, Nielsen AE (1994) Vaterite growth and dissolution in aqueous solution ii. Kinetics of dissolution. J Cryst Growth 143(3–4):269–276
Kumari D, Pan X, Lee D-J, Achal V (2014) Immobilization of cadmium in soil by microbially induced carbonate precipitation with Exiguobacterium undae at low temperature. Int Biodeterior Biodegrad 94:98–102
Kumari D, Qian X-Y, Pan X, Achal V, Li Q, Gadd GM (2016) Microbially-induced carbonate precipitation for immobilization of toxic metals. Adv Appl Microbiol 94:79–108
Kunst F, Rapoport G (1995) Salt stress is an environmental signal affecting degradative enzyme synthesis in Bacillus subtilis. J Bacteriol 177(9):2403–2407
Le Metayer-Levrel G, Castanier S, Orial G, Loubiere J-F, Perthuisot J-P (1999) Applications of bacterial carbonatogenesis to the protection and regeneration of limestones in buildings and historic patrimony. Sediment Geol 126(1–4):25–34
Lecuyer S, Rusconi R, Shen Y, Forsyth A, Vlamakis H, Kolter R, Stone HA (2011) Shear stress increases the residence time of adhesion of Pseudomonas aeruginosa. Biophys J 100(2):341–350
Li H (2011) Classification of deterioration states of historical stone relics and its application. Sci Conserv Archaeol 23(01):1–6
Li B (2014) Geotechnical properties of biocement treated soils. Nanyang Technological University, Singapore
Li J, Thompson DWJ (2021) Widespread changes in surface temperature persistence under climate change. Nature 599(7885):425–430. https://doi.org/10.1038/s41586-021-03943-z
Li P, Qu W, Xu D, Xiao Y (2009) Remediation of historic marble architectural heritages by bacterially-induced biomineralization. J South China Univ Technol (natural Science Edition) 37(09):36–41
Li M, Cheng X, Guo H (2013) Heavy metal removal by biomineralization of urease producing bacteria isolated from soil. Int Biodeterior Biodegrad 76:81–85
Li M, Fu Q-L, Zhang Q, Achal V, Kawasaki S (2015) Bio-grout based on microbially induced sand solidification by means of asparaginase activity. Sci Rep 5(1):1–9
Li C, Wang S, Wang Y, Gao Y (2019) Field experimental study on stability of bio-mineralization crust in the desert. Rock Soil Mech 40(4):1291–1298
Li S, Li C, Yao D, Wang S (2020) Feasibility of microbially induced carbonate precipitation and straw checkerboard barriers on desertification control and ecological restoration. Ecol Eng 152:105883
Lin H, Suleiman MT, Brown DG (2020) Investigation of pore-scale caco3 distributions and their effects on stiffness and permeability of sands treated by microbially induced carbonate precipitation (micp). Soils Found 60:944
Liu L, Shen Y, Liu H, Chu J (2016) Application of bio-cement in erosion control of levees. Rock Soil Mech 37(12):3410–3416
Liu D, Shao A, Jin C, Yang L (2018a) Healing technique for rock cracks based on microbiologically induced calcium carbonate mineralization. J Mater Civ Eng 30(11):04018286
Liu H, Xiao P, Xiao Y, Wang J, Chen Y, Chu J (2018b) Dynamic behaviors of micp-treated calcareous sand in cyclic tests. Chin J Geotech Eng 40(1):38–45
Liu H, Xiao P, Xiao Y, Chu J (2019a) State-of-the-art review of biogeotechnology and its engineering applications. J Civ Environ Eng 41(01):1–14
Liu J, Xiao L, Xie Z (2019b) Protection of stone cultural relics in china: analysis of nsfc-funded projects. Sci Conserv Archaeol 031(002):112–119
Liu L, Liu H, Stuedlein AW, Evans TM, Xiao Y (2019c) Strength, stiffness, and microstructure characteristics of biocemented calcareous sand. Can Geotech J 56(10):1502–1513
Liu S, Wen K, Armwood C, Bu C, Li C, Amini F, Li L (2019d) Enhancement of micp-treated sandy soils against environmental deterioration. J Mater Civ Eng 31(12):04019294
Liu B, Zhu C, Tang C-S, Xie Y-H, Yin L-Y, Cheng Q, Shi B (2020a) Bio-remediation of desiccation cracking in clayey soils through microbially induced calcite precipitation (micp). Eng Geol 264:105389
Liu K-W, Jiang N-J, Qin J-D, Wang Y-J, Tang C-S, Han X-L (2020b) An experimental study of mitigating coastal sand dune erosion by microbial-and enzymatic-induced carbonate precipitation. Acta Geotech 16:1–14
Liu S, Yu J, Peng X, Cai Y, Tu B (2020c) Preliminary study on repairing tabia cracks by using microbially induced carbonate precipitation. Constr Build Mater 248:118611
Liu S, Yu J, Zeng W, Peng X, Cai Y, Tu B (2020d) Repair effect of tabia cracks with microbially induced carbonate precipitation. Chin J Rock Mech Eng 39(01):191–204
Liu H, Chu J, Kavazanjian E (2023) Biogeotechnics: a new frontier in geotechnical engineering for sustainability. Biogeotechnics 1:100001
Lovley DR (1991) Dissimilatory fe (iii) and mn (iv) reduction. Microbiol Mol Biol Rev 55(2):259–287
Lu N, Mitchell JK (2019) Geotechnical fundamentals for addressing new world challenges. Springer
Lv C, Zhu C, Tang CS, Cheng Q, Yin LY, Shi B (2020) Effect of fiber reinforcement on the mechanical behavior of bio-cemented sand. Geosynth Int (in press)
Ma R, Guo H, Cheng X, Liu J (2018) Permeability experiment study of calcareous sand treated by microbially induced carbonate precipitation using mixing methods. Rock Soil Mech 39(S2):217–223
Maleki M, Ebrahimi S, Asadzadeh F, Tabrizi ME (2016) Performance of microbial-induced carbonate precipitation on wind erosion control of sandy soil. Int J Environ Sci Technol 13(3):937–944
Martinez B, DeJong J, Ginn T, Montoya B, Barkouki T, Hunt C, Tanyu B, Major D (2013) Experimental optimization of microbial-induced carbonate precipitation for soil improvement. J Geotech Geoenviron Eng 139(4):587–598
Meldrum FC, Cölfen H (2008) Controlling mineral morphologies and structures in biological and synthetic systems. Chem Rev 108(11):4332–4432
Meng H, Gao Y, He J, Qi Y, Hang L (2021) Microbially induced carbonate precipitation for wind erosion control of desert soil: field-scale tests. Geoderma 383:114723
Meyer F, Bang S, Min S, Stetler L, Bang S (2011) Microbiologically-induced soil stabilization: application of sporosarcina pasteurii for fugitive dust control. In: Geo-frontiers 2011: advances in geotechnical engineering, pp 4002–4011
Mi J, Wang H, Liu J, Yan H (2017) Research and application progress of soil stabilizer. Mater Rep 31(S1):388–391+401
Minto JM, MacLachlan E, El Mountassir G, Lunn RJ (2016) Rock fracture grouting with microbially induced carbonate precipitation. Water Resour Res 52(11):8827–8844. https://doi.org/10.1002/2016WR018884
Mishra PN, Jain S, Bore T, Chang I, Kwon Y-M, Wang Y, Dash HR, Kumar A, Tiwari S, Jiang N, Das SK, Scheuermann A (2023) Biological perspectives in geotechnics: application and monitoring. J Rock Mech Geotech Eng. https://doi.org/10.1016/j.jrmge.2023.10.007
Mitchell JK, Santamarina JC (2005) Biological considerations in geotechnical engineering. J Geotech Geoenviron Eng 131(10):1222–1233
Mitchell AC, Phillips AJ, Hiebert R, Gerlach R, Spangler LH, Cunningham AB (2009) Biofilm enhanced geologic sequestration of supercritical co2. Int J Greenh Gas Control 3(1):90–99
Montoya BM (2012) Bio-mediated soil improvement and the effect of cementation on the behavior, improvement, and performance of sand. University of California, Davis
Montoya B, DeJong J (2015) Stress-strain behavior of sands cemented by microbially induced calcite precipitation. J Geotech Geoenviron Eng 141(6):04015019
Movahedan M, Abbasi N, Keramati M (2012) Wind erosion control of soils using polymeric materials. Euras J Soil Sci 2:81–86
Moyo C, Kissel D, Cabrera M (1989) Temperature effects on soil urease activity. Soil Biol Biochem 21(7):935–938
Mugwar AJ, Harbottle MJ (2016) Toxicity effects on metal sequestration by microbially-induced carbonate precipitation. J Hazard Mater 314:237–248
Mujah D, Shahin MA, Cheng L (2017) State-of-the-art review of biocementation by microbially induced calcite precipitation (micp) for soil stabilization. Geomicrobiol J 34(6):524–537
Naeimi M, Chu J (2017) Comparison of conventional and bio-treated methods as dust suppressants. Environ Sci Pollut Res 24(29):23341–23350
Naeimi M, Haddad A (2020) Environmental impacts of chemical and microbial grouting. Environ Sci Pollut Res 27(2):2264–2272
Nafisi A, Khoubani A, Montoya BM, Evans M (2018) The effect of grain size and shape on mechanical behavior of micp sand i: experimental study. In: Proceedings of the 11th National Conf. in Earthquake Eng., Earthquake Eng. Research Ins. Los Angeles
Nain N, Surabhi R, Yathish N, Krishnamurthy V, Deepa T, Tharannum S (2019) Enhancement in strength parameters of concrete by application of bacillus bacteria. Constr Build Mater 202:904–908
Naveed M, Duan J, Uddin S, Suleman M, Hui Y, Li H (2020) Application of microbially induced calcium carbonate precipitation with urea hydrolysis to improve the mechanical properties of soil. Ecol Eng. https://doi.org/10.1016/j.ecoleng.2020.105885
Nielsen PH, Jahn A, Palmgren R (1997) Conceptual model for production and composition of exopolymers in biofilms. Water Sci Technol 36(1):11–19
O’Donnell ST, Rittmann BE, Kavazanjian E Jr (2017) Midp: liquefaction mitigation via microbial denitrification as a two-stage process. I: Desaturation. J Geotech Geoenviron Eng 143(12):04017094
O’Donnell ST, Rittmann BE, Kavazanjian E Jr (2019) Factors controlling microbially induced desaturation and precipitation (midp) via denitrification during continuous flow. Geomicrobiol J 36(6):543–558
Okamura M, Soga Y (2006) Effects of pore fluid compressibility on liquefaction resistance of partially saturated sand. Soils Found 46(5):695–700
Okamura M, Takebayashi M, Nishida K, Fujii N, Jinguji M, Imasato T, Yasuhara H, Nakagawa E (2011) In-situ desaturation test by air injection and its evaluation through field monitoring and multiphase flow simulation. J Geotech Geoenviron Eng 137(7):643–652
Okwadha GD, Li J (2010) Optimum conditions for microbial carbonate precipitation. Chemosphere 81(9):1143–1148
Orial G, Marie-Victoire E (1997) Fabrication de carbonate de calcium par voie biologique: La carbonatogenese. In: Proceedings of international seminar on deterioration of concrete and natural stone of historical monuments, pp 59–76
Ou Y, Fang X, Zhang N, Li J (2016) Influence of solution salinity on microbial biocementation of coral sand. J Log Eng Univ 32(1):78–82
Peng J, Tian Y, Yang J (2019a) Experiments of coral sand reinforcement using micp in seawater environment. Adv Sci Technol Water Resour 39(1):58–62
Peng S, Zhang K, Kang J, Fan L, Wang F (2019b) Experimental study on microbial impermeability mechanism of fractured rock mass. J Yangtze River Sci Res Inst 2020:1–8
Peng S, Di H, Fan L, Fan W, Qin L (2020) Factors affecting permeability reduction of micp for fractured rock. Front Earth Sci 8:217
Perkins S, Gyr P, James G (2000) The influence of biofilm on the mechanical behavior of sand. Geotech Test J 23(3):300–312
Pham P (2017) Bio-based ground improvement through microbial induced desaturation and precipitation (midp)
Pham VP, Nakano A, Van Der Star WR, Heimovaara TJ, Van Paassen LA (2016) Applying micp by denitrification in soils: a process analysis. Environ Geotech 5(2):79–93
Pham VP, van Paassen LA, van der Star WR, Heimovaara TJ (2018) Evaluating strategies to improve process efficiency of denitrification-based micp. J Geotech Geoenviron Eng 144(8):04018049
Phillips AJ (2013) Biofilm-induced calcium carbonate precipitation: application in the subsurface. Montana State University-Bozeman, College of Engineering
Phillips AJ, Lauchnor E, Eldring J, Esposito R, Mitchell AC, Gerlach R, Cunningham AB, Spangler LH (2013) Potential co2 leakage reduction through biofilm-induced calcium carbonate precipitation. Environ Sci Technol 47(1):142–149
Phillips AJ, Cunningham AB, Gerlach R, Hiebert R, Hwang C, Lomans BP, Westrich J, Mantilla C, Kirksey J, Esposito R (2016) Fracture sealing with microbially-induced calcium carbonate precipitation: a field study. Environ Sci Technol 50(7):4111–4117
Phillips AJ, Troyer E, Hiebert R, Kirkland C, Gerlach R, Cunningham AB, Spangler L, Kirksey J, Rowe W, Esposito R (2018) Enhancing wellbore cement integrity with microbially induced calcite precipitation (micp): a field scale demonstration. J Petrol Sci Eng 171:1141–1148
Pietruszczak S, Pande G, Oulapour M (2003) A hypothesis for mitigation of risk of liquefaction. Geotechnique 53(9):833–838
Portugal CRME, Fonyo C, Machado CC, Meganck R, Jarvis T (2020) Microbiologically induced calcite precipitation biocementation, green alternative for roads—is this the breakthrough? A critical review. J Clean Prod:121372.
Prasad CRV, Reddy PHP, Murthy VR, Sivapullaiah P (2018) Swelling characteristics of soils subjected to acid contamination. Soils Found 58(1):110–121
Proto C, DeJong J, Nelson D (2016) Biomediated permeability reduction of saturated sands. J Geotech Geoenviron Eng 142(12):04016073
Pungrasmi W, Intarasoontron J, Jongvivatsakul P, Likitlersuang S (2019) Evaluation of microencapsulation techniques for micp bacterial spores applied in self-healing concrete. Sci Rep 9(1):1–10
Qian C, Li R, Pan Q, Luo M, Rong H (2013) Microbial self-healing effects of concrete cracks. J Southeast Univ (natural Science Edition) 43(2):360–364
Qian C, Wang R, Zhan Q (2015) Fundamentals of engineering applications of microbial mineralization. Science Press, Beijing
Qian X, Fang C, Huang M, Achal V (2017) Characterization of fungal-mediated carbonate precipitation in the biomineralization of chromate and lead from an aqueous solution and soil. J Clean Prod 164:198–208
Rahman MM, Hora RN, Ahenkorah I, Beecham S, Karim MR, Iqbal A (2020) State-of-the-art review of microbial-induced calcite precipitation and its sustainability in engineering applications. Sustainability 12(15):6281
Rajasekar A, Wilkinson S, Moy CKS (2021) Micp as a potential sustainable technique to treat or entrap contaminants in the natural environment: a review. Environ Sci Ecotechnol 6:100096. https://doi.org/10.1016/j.ese.2021.100096
Ranalli G, Matteini M, Tosini I, Zanardini E, Sorlini C (2000) Bioremediation of cultural heritage: removal of sulphates, nitrates and organic substances. In: Ciferri O, Tiano P, Mastromei G (eds) Of microbes and art: the role of microbial communities in the degradation and protection of cultural heritage. Springer, Boston, pp 231–245. https://doi.org/10.1007/978-1-4615-4239-1_16
Raymond AJ, Kendall A, DeJong JT (2020) Life cycle sustainability assessment (lcsa): A research evaluation tool for emerging geotechnologies. Geo-Congress 2020: Biogeotechnics. American Society of Civil Engineers, Reston, pp 330–339
Rebata-Landa V (2007) Microbial activity in sediments: effects on soil behavior. Georgia Institute of Technology
Rebata‐Landa V, Santamarina JC (2006) Mechanical limits to microbial activity in deep sediments. Geochem Geophys Geosyst 7(11)
Rebata-Landa V, Santamarina JC (2012) Mechanical effects of biogenic nitrogen gas bubbles in soils. J Geotech Geoenviron Eng 138(2):128–137
Reddy SV, Satya AK, Rao SM, Azmatunnisa M (2012) A biological approach to enhance strength and durability in concrete structures. Int J Adv Eng Technol 4(2):392
Rickard AH, Gilbert P, High NJ, Kolenbrander PE, Handley PS (2003) Bacterial coaggregation: an integral process in the development of multi-species biofilms. Trends Microbiol 11(2):94–100
Roden EE, Leonardo MR, Ferris FG (2002) Immobilization of strontium during iron biomineralization coupled to dissimilatory hydrous ferric oxide reduction. Geochim Cosmochim Acta 66(16):2823–2839
Rodriguez-Navarro C, Rodriguez-Gallego M, Chekroun KB, Gonzalez-Munoz MT (2003) Conservation of ornamental stone by myxococcus xanthus-induced carbonate biomineralization. Appl Environ Microbiol 69(4):2182–2193
Roh Y, Gao H, Vali H, Kennedy DW, Yang ZK, Gao W, Dohnalkova AC, Stapleton RD, Moon J-W, Phelps TJ (2006) Metal reduction and iron biomineralization by a psychrotolerant fe (iii)-reducing bacterium, Shewanella sp. Strain pv-4. Appl Environ Microbiol 72(5):3236–3244
Roth MJ, Caslake LF (2019) Reducing soil permeability using in situ biofilm-forming bacteria: overcoming testing apparatus challenges. Geo-congress 2019: soil improvement. American Society of Civil Engineers, Reston, pp 187–195
Rowshanbakht K, Khamehchiyan M, Sajedi RH, Nikudel MR (2016) Effect of injected bacterial suspension volume and relative density on carbonate precipitation resulting from microbial treatment. Ecol Eng 89:49–55
Saif A, Cuccurullo A, Gallipoli D, Perlot C, Bruno AW (2022) Advances in enzyme induced carbonate precipitation and application to soil improvement: a review. Materials 15(3):950
Salifu E, MacLachlan E, Iyer KR, Knapp CW, Tarantino A (2016) Application of microbially induced calcite precipitation in erosion mitigation and stabilisation of sandy soil foreshore slopes: a preliminary investigation. Eng Geol 201:96–105
Sani J, Moses G, Oriola F (2020) Evaluating the electrical resistivity of microbial-induced calcite precipitate-treated lateritic soil. SN Appl Sci 2(9):1–12
Saracho AC, Haigh SK, Hata T, Soga K, Farsang S, Redfern SA, Marek E (2020) Characterisation of caco 3 phases during strain-specific ureolytic precipitation. Sci Rep 10(1):1–12
Seagren EA, Aydilek AH (2010) Biomediated geomechanical processes. Environ Microbiol:319–348.
Seifan M, Berenjian A (2019) Microbially induced calcium carbonate precipitation: a widespread phenomenon in the biological world. Appl Microbiol Biotechnol 103(12):4693–4708. https://doi.org/10.1007/s00253-019-09861-5
Shanahan C, Montoya B (2014) Strengthening coastal sand dunes using microbial-induced calcite precipitation. In: Geo-congress 2014: geo-characterization and modeling for sustainability, pp 1683–1692
Shao G, Feng J, Zhao Z, Liu P, Li Z, Zhou N (2017) Influence factor analysis related to strength and anti-erosion stability of silt slope with microbial mortar protective covering. Trans Chin Soc Agric Eng 33(11):133–139
Sharma A, Ramkrishnan R (2016) Study on effect of microbial induced calcite precipitates on strength of fine grained soils. Perspect Sci 8:198–202
Sharma M, Satyam N (2021) Strength and durability of biocemented sands: wetting-drying cycles, ageing effects, and liquefaction resistance. Geoderma 402:115359. https://doi.org/10.1016/j.geoderma.2021.115359
Sharma M, Satyam N, Reddy KR (2021) Rock-like behavior of biocemented sand treated under non-sterile environment and various treatment conditions. J Rock Mech Geotech Eng 13(3):705–716. https://doi.org/10.1016/j.jrmge.2020.11.006
Sharma M, Satyam N, Reddy KR (2022) Large-scale spatial characterization and liquefaction resistance of sand by hybrid bacteria induced biocementation. Eng Geol 302:106635. https://doi.org/10.1016/j.enggeo.2022.106635
Shaw JC, Bramhill B, Wardlaw N, Costerton J (1985) Bacterial fouling in a model core system. Appl Environ Microbiol 49(3):693–701
Smith K (2013) Environmental hazards: assessing risk and reducing disaster. Routledge, London
Song C, Elsworth D (2018) Strengthening mylonitized soft-coal reservoirs by microbial mineralization. Int J Coal Geol 200:166–172
Song C, Elsworth D (2020) Microbially induced calcium carbonate plugging for enhanced oil recovery. Geofluids 11:1–10
Soon NW, Lee LM, Khun TC, Ling HS (2013) Improvements in engineering properties of soils through microbial-induced calcite precipitation. KSCE J Civ Eng 17(4):718–728
Soon NW, Lee LM, Khun TC, Ling HS (2014) Factors affecting improvement in engineering properties of residual soil through microbial-induced calcite precipitation. J Geotech Geoenviron Eng 140(5):04014006
Srivastava PK, Kayastha AM (2001) Characterization of gelatin-immobilized pigeonpea urease and preparation of a new urea biosensor. Biotechnol Appl Biochem 34(1):55–62
Sruthi PL, Reddy PHP, Moghal AAB (2022) Swelling behavior of alkali transformed kaolinitic clays treated with flyash and ground granulated blast furnace slag. Indian Geotech J 52(1):145–160
Stabnikov V, Jian C, Ivanov V, Li Y (2013) Halotolerant, alkaliphilic urease-producing bacteria from different climate zones and their application for biocementation of sand. World J Microbiol Biotechnol 29(8):1453–1460
Stabnikov V, Ivanov V, Chu J (2016) Sealing of sand using spraying and percolating biogrouts for the construction of model aquaculture pond in arid desert. Int Aquat Res 8(3):207–216
Stocks-Fischer S, Galinat JK, Bang SS (1999) Microbiological precipitation of caco3. Soil Biol Biochem 31(11):1563–1571
Suliman MF, Sarsam SI (2018) Behavior of bacterial concrete under freezing and thawing cycles. J Adv Civ Eng Construct Mater 1(1):40–50
Sun M (2007) Research status and development of the conservation of earth sites. Sci Conserv Archaeol 4:64–70
Sun X, Miao L, Wu L (2020a) Applicability and theoretical calculation of enzymatic calcium carbonate precipitation for sand improvement. Geomicrobiol J 37(4):389–399
Sun X, Miao L, Wu L, Wang C, Chen R (2020b) The method of repairing microcracks based on microbiologically induced calcium carbonate precipitation. Adv Cem Res 32(6):262–272
Sun X, Miao L, Wang H, Yin W, Wu L (2021) Mineralization crust field experiment for desert sand solidification based on enzymatic calcification. J Environ Manage 287:112315
Tan Q (2017) Research on marble relics repairment by microbially induced carbonate precipitation technology. Tsinghua University, Beijing
Tang C-S, Yin L-y, Jiang N-j, Zhu C, Zeng H, Li H, Shi B (2020) Factors affecting the performance of microbial-induced carbonate precipitation (micp) treated soil: a review. Environ Earth Sci 79(5):1–23
Tang C, Pan X, Lv C, Dong Z, Liu B, Wang D, Li H, Cheng Y, Bin S (2021) Bio-geoengineering technology and the applications. Geol J China Univ 27(6):625–654. https://doi.org/10.16108/j.issn1006-7493.2021011
Terzis D, Laloui L (2019) A decade of progress and turning points in the understanding of bio-improved soils: a review. Geomech Energy Environ. https://doi.org/10.1016/j.gete.2019.03.001
Tiano P, Biagiotti L, Mastromei G (1999) Bacterial bio-mediated calcite precipitation for monumental stones conservation: methods of evaluation. J Microbiol Methods 36(1–2):139–145
Tiano P, Cantisani E, Sutherland I, Paget J (2006) Biomediated reinforcement of weathered calcareous stones. J Cult Heritage 7(1):49–55
Tobler DJ, Minto JM, El Mountassir G, Lunn RJ, Phoenix VR (2018) Microscale analysis of fractured rock sealed with microbially induced caco3 precipitation: Influence on hydraulic and mechanical performance. Water Resour Res 54(10):8295–8308
Torres-Aravena ÁE, Duarte-Nass C, Azócar L, Mella-Herrera R, Rivas M, Jeison D (2018) Can microbially induced calcite precipitation (micp) through a ureolytic pathway be successfully applied for removing heavy metals from wastewaters? Crystals 8(11):438
Tourney J, Ngwenya BT (2009) Bacterial extracellular polymeric substances (eps) mediate caco3 morphology and polymorphism. Chem Geol 262(3–4):138–146
Vail M, Zhu C, Tang C-S, Anderson L, Moroski M, Montalbo-Lomboy MT (2019) Desiccation cracking behavior of micp-treated bentonite. Geosciences 9(9):385
Vail M, Zhu C, Tang C-S, Maute N, Montalbo-Lomboy MT (2020) Desiccation cracking behavior of clayey soils treated with biocement and bottom ash admixture during wetting–drying cycles. Transp Res Rec:0361198120924409
Van Paassen L, Harkes M, Van Zwieten G, Van der Zon W, Van der Star W, Van Loosdrecht M (2009) Scale up of biogrout: a biological ground reinforcement method. In: Proceedings of the 17th international conference on soil mechanics and geotechnical engineering. IOS Press, Lansdale, PA, pp 2328–2333
Van Paassen LA, Daza CM, Staal M, Sorokin DY, van der Zon W, van Loosdrecht MC (2010a) Potential soil reinforcement by biological denitrification. Ecol Eng 36(2):168–175
Van Paassen LA, Ghose R, van der Linden TJ, van der Star WR, van Loosdrecht MC (2010b) Quantifying biomediated ground improvement by ureolysis: large-scale biogrout experiment. J Geotech Geoenviron Eng 136(12):1721–1728
Van Paassen LA, Pham V, Mahabadi N, Hall C, Stallings E, Kavazanjian E Jr (2017) Desaturation via biogenic gas formation as a ground improvement technique. Panam Unsatur Soils 2017:244–256
Veerachamy S, Yarlagadda T, Manivasagam G, Yarlagadda PK (2014) Bacterial adherence and biofilm formation on medical implants: a review. Proc Inst Mech Eng Part H J Eng Med 228(10):1083–1099
Vydehi KV, Moghal AAB (2022) Effect of biopolymeric stabilization on the strength and compressibility characteristics of cohesive soil. J Mater Civ Eng 34(2):04021428
Wang J, Chen C (2009) Biosorbents for heavy metals removal and their future. Biotechnol Adv 27(2):195–226
Wang R, Qian C (2008) Restoration of defects on the surface of cement-based materials by microbiologically precipitated caco3. J Chin Ceram Soc 4:457–464
Wang X-Z, Jiao Y-Y, Wang R, Hu M-J, Meng Q-S, Tan F-Y (2011) Engineering characteristics of the calcareous sand in Nansha islands, south china sea. Eng Geol 120(1):40–47. https://doi.org/10.1016/j.enggeo.2011.03.011
Wang J-Y, De Belie N, Verstraete W (2012) Diatomaceous earth as a protective vehicle for bacteria applied for self-healing concrete. J Ind Microbiol Biotechnol 39(4):567–577
Wang J, Ersan YC, Boon N, De Belie N (2016) Application of microorganisms in concrete: a promising sustainable strategy to improve concrete durability. Appl Microbiol Biotechnol 100(7):2993–3007
Wang Y, Liu H, Zhang Z, Xiao P, He X, Xiao Y (2018a) Study on low-strength biocemented sands using a temperature-controlled micp (microbially induced calcite precipitation) method. Civil infrastructures confronting severe weathers and climate changes conference. Springer, Berlin, pp 15–26
Wang Z, Zhang N, Ding J, Lu C, Jin Y (2018b) Experimental study on wind erosion resistance and strength of sands treated with microbial-induced calcium carbonate precipitation. Adv Mater Sci Eng 2018
Wani KS, Mir B (2021a) A laboratory-scale study on the bio-cementation potential of distinct river sediments infused with microbes. Transp Infrastruct Geotechnol 8(1):162–185
Wani KS, Mir B (2021b) An experimental study on the bio-cementation and bio-clogging effect of bacteria in improving weak dredged soils. Geotech Geol Eng 39:317–334
Weiland P (2010) Biogas production: current state and perspectives. Appl Microbiol Biotechnol 85(4):849–860
Wen K, Li Y, Amini F, Li L (2020) Impact of bacteria and urease concentration on precipitation kinetics and crystal morphology of calcium carbonate. Acta Geotech 15(1):17–27. https://doi.org/10.1007/s11440-019-00899-3
Whiffin VS (2004) Microbial caco3 precipitation for the production of biocement. Murdoch University, Perth
Whiffin VS, Van Paassen LA, Harkes MP (2007) Microbial carbonate precipitation as a soil improvement technique. Geomicrobiol J 24(5):417–423
Whitaker J (2016) Assessing recombinant expression of urease enzyme from sporosarcina ureae as a carbonatogenic method for strength enhancement of loose, sandy soils. Université d’Ottawa/University of Ottawa, Ottawa
Whitman WB, Coleman DC, Wiebe WJ (1998) Prokaryotes: the unseen majority. Proc Natl Acad Sci 95(12):6578–6583
Wiktor V, Jonkers HM (2011) Quantification of crack-healing in novel bacteria-based self-healing concrete. Cem Concr Compos 33(7):763–770
Won J, Jeong B, Lee J, Dai S, Burns SE (2020) Facilitation of microbially induced calcite precipitation with kaolinite nucleation. Géotechnique 71:1–7
Woolley MA, Van Paassen L, Kavazanjian E Jr (2020) Impact on surface hydraulic conductivity of eicp treatment for fugitive dust mitigation. Geo-congress 2020: biogeotechnics. American Society of Civil Engineers, Reston, pp 132–140
Wu C, Chu J, Wu S, Guo W (2019) Quantifying the permeability reduction of biogrouted rock fracture. Rock Mech Rock Eng 52(3):947–954
Wu C, Chu J, Wu S (2020) Biogrouting of rock joints. Geo-congress 2020: biogeotechnics. American Society of Civil Engineers, Reston, pp 1–8
Xiao P, Liu H, Stuedlein AW, Evans TM, Xiao Y (2019) Effect of relative density and biocementation on cyclic response of calcareous sand. Can Geotech J 56(12):1849–1862. https://doi.org/10.1139/cgj-2018-0573
Xiao Y, Wang Y, Wang S, Evans TM, Stuedlein AW, Chu J, Zhao C, Wu H, Liu H (2021a) Homogeneity and mechanical behaviors of sands improved by a temperature-controlled one-phase micp method. Acta Geotech 16(5):1417–1427. https://doi.org/10.1007/s11440-020-01122-4
Xiao Y, Wang Y, Wang S, Evans TM, Stuedlein AW, Chu J, Zhao C, Wu H, Liu H (2021b) Homogeneity and mechanical behaviors of sands improved by a temperature-controlled one-phase micp method. Acta Geotech 16:1–11
Xiao Y, Zhou W, Shi J, Lu H, Zhang Z (2022) Erosion of biotreated field-scale slopes under rainfalls. J Perform Constr Facil 36(3):04022030. https://doi.org/10.1061/(ASCE)CF.1943-5509.0001732
Xu J, Heeraman D, Wang Y (1993) Fertilizer and temperature effects on urea hydrolysis in undisturbed soil. Biol Fertil Soils 16(1):63–65
Xu X, Guo H, Cheng X, Li M (2020) The promotion of magnesium ions on aragonite precipitation in micp process. Constr Build Mater. https://doi.org/10.1016/j.conbuildmat.2020.120057
Yang P, O’Donnell S, Hamdan N, Kavazanjian E, Neithalath N (2017) 3d dem simulations of drained triaxial compression of sand strengthened using microbially induced carbonate precipitation. Int J Geomech 17(6):04016143
Yang Y, Chu J, Xiao Y, Liu H, Cheng L (2019) Seepage control in sand using bioslurry. Constr Build Mater 212:342–349
Yang Y, Chu J, Cao B, Liu H, Cheng L (2020a) Biocementation of soil using non-sterile enriched urease-producing bacteria from activated sludge. J Clean Prod 262:121315
Yang Y, Ruan S, Wu S, Chu J, Unluer C, Liu H, Cheng L (2020b) Biocarbonation of reactive magnesia for soil improvement. Acta Geotech 16:1–13
Yasuhara H, Neupane D, Hayashi K, Okamura M (2012) Experiments and predictions of physical properties of sand cemented by enzymatically-induced carbonate precipitation. Soils Found 52(3):539–549
Yegian M, Eseller-Bayat E, Alshawabkeh A, Ali S (2007) Induced-partial saturation for liquefaction mitigation: Experimental investigation. J Geotech Geoenviron Eng 133(4):372–380
Yin L, Tang C, Xie Y, Lv C, Jiang N, Shi B (2019) Factors affecting improvement in engineering properties of geomaterials by microbial-induced calcite precipitation. Rock Soil Mech 40(07):2525–2546
Yu X (2017) A case study on the ruins of the city wall and its influencing factors—take suijing ruins as an example. Study Nat Cult Heritage 5:183–185
Yu T, Souli H, Péchaud Y, Fleureau J-M (2020) Optimizing protocols for microbial induced calcite precipitation (micp) for soil improvement—a review. Eur J Environ Civ Eng 26:1–16
Zachara JM, Kukkadapu RK, Fredrickson JK, Gorby YA, Smith SC (2002) Biomineralization of poorly crystalline fe (iii) oxides by dissimilatory metal reducing bacteria (dmrb). Geomicrobiol J 19(2):179–207
Zamani A, Montoya BM, Gabr MA (2019) Investigating challenges of in situ delivery of microbial-induced calcium carbonate precipitation (micp) in fine-grain sands and silty sand. Can Geotech J 56(12):1889–1900
Zehner JS, Røyne A, Sikorski P (2020) Experimental study of microbial induced carbonate precipitation (micp) in the presence of caco3 seeds. bioRxiv. https://doi.org/10.1101/2020.07.17.206516
Zhang Y (2014) Research on sand cementation and concrete cracks repairment by microbially induced carbonate precipitation technology. Tsinghua University, Beijing
Zhang Y, Guo H, Cheng X (2014) Influences of calcium sources on microbially induced carbonate precipitation in porous media. Mater Res Innov 18(sup2):S2-79-S72-84
Zhang Y, Wu F, Su M, He D, Ma W, Wang W, Feng H (2019) Research progress on the bioweathering and controlling of stone cultural relics. Chin J Appl Ecol 30(11):3980–3990
Zhao H, Li Z, Han W, Wang X, Chen W (2003) Main diseases and their causes of earthen ruins in arid region of northwestern china. Chin J Rock Mech Eng S2:2875–2880
Zhao Q, Li L, Li C, Li M, Amini F, Zhang H (2014) Factors affecting improvement of engineering properties of micp-treated soil catalyzed by bacteria and urease. J Mater Civ Eng 26(12):04014094
Zhao Y, Yao J, Yuan Z, Wang T, Zhang Y, Wang F (2017) Bioremediation of cd by strain gz-22 isolated from mine soil based on biosorption and microbially induced carbonate precipitation. Environ Sci Pollut Res 24(1):372–380
Zhao L (2015) Production of ammonium sulfate fertilizer using acid spray wet scrubbers. Agric Eng Int CIGR J
Zheng H-m, Wu L-l, Tong K-w, Hu L, Yu Q, He G-c, Zhang Z-j (2020) Experimental study on micp aqueous solution under the action of different organic substrates. Geofluids 2020:1–1
Zhong L, Islam M (1995) A new microbial plugging process and its impact on fracture remediation. In: SPE annual technical conference and exhibition. Society of Petroleum Engineers
Zhou H, Hou X, Cheng J, Yue G (1985) Study on the role of vegetative cover in preventing soil erosion. Soil Water Conserv China 12(33–37):66–67
Zhu W (2011) Fundamental studies of calcium carbonate mineralization microbiologically in stone induced by materials surface protection. Southwest University of Science and Technology, Mianyang
Zhu T, Dittrich M (2016) Carbonate precipitation through microbial activities in natural environment, and their potential in biotechnology: a review. Front Bioeng Biotechnol 4:4. https://doi.org/10.3389/fbioe.2016.00004
Zhu J, Zhou Y, Wang D, Zhang J (2019) Affecting factors for calcareous sand reinforcement based on microbial induced mineralization. Bull Geol Sci Technol 38(06):206–211
Acknowledgements
This work was supported by the National Natural Science Foundation of China (Grant no. 41925012, 42230710, 42007244, 41902271), National Key Research and Development Program of China (Grant no. 2023YFC3707900), Key task project for joint research and development of the Yangtze River Delta Science and Technology Innovation Community (Grant no. 2022CSJGG1200), Natural Science Foundation of Jiangsu Province (Grant no. BK20211087), National Key Research and Development Program of China (2020YFC1808000), and Open Fund of State Key Laboratory of Geohazard Prevention and Geoenvironment Protection (Grant no. SKLGP2021K013).
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DZH: Data curation, Software, Visualization, Writing—original draft. PXH: Validation, Investigation, Writing—review and editing. ZC: Validation, Investigation, Writing—review and editing. TCS: Conceptualization, Methodology, Writing—review and editing, Funding acquisition, Project administration, Supervision. LC: Data curation, Writing—editing. LB: Data curation, Writing—editing. WDL: Data curation, Writing—editing. LH: Data curation, Writing—editing. CYJ: Data curation, Writing—editing. SB: Project administration.
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Dong, ZH., Pan, XH., Zhu, C. et al. Bio-mediated geotechnology and its application in geoengineering: mechanism, approach, and performance. Environ Earth Sci 83, 348 (2024). https://doi.org/10.1007/s12665-024-11668-1
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DOI: https://doi.org/10.1007/s12665-024-11668-1