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The role and challenges of new diagnostic technology in plant biosecurity

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Abstract

Pest and pathogens pose a major threat to food security and the natural environment, and these threats are moving around the globe. Trade, travel and transport have major roles to play in this and thus to improve plant biosecurity, we need enhanced phytosanitary inspection systems. In order to achieve this, there is a role for the more effective use of diagnostic technology, such as field-based testing or the use of next generation sequencing technology. In this review we examine the opportunities and challenges posed by using new technology within a plant biosecurity context, but in contrast to previous reviews, here we focus on practical challenges associated with deployment and routine use, rather than specific technical issues. These key challenges include the need to accelerate the development and deployment of new technologies into the field, the accelerated discovery of new pathogens and the need for new risk assessment approaches, and improvements to our understanding of how best to deploy and use new diagnostic tools for maximum impact. Throughout we focus on how interdisciplinary approaches are important to help us improve our understanding and achieve our goals.

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References

  • Adams, I. P., Miano, D. W., Kinyua, Z. M., Wangai, A., Kimani, E., Phiri, N., Reeder, R., Harju, V., Glover, R., Hany, U., Souza-Richards, R., Deb Nath, P., Nixon, T., Fox, A., Barnes, A., Smith, J. J., Skelton, A., Thwaites, R., Mumford, R. A., N. Boonham, N. (2013). Use of next-generation sequencing for the identification and characterization of maize chlorotic mottle virus and sugarcane mosaic virus causing maize lethal necrosis in Kenya. Plant Pathology 62, 741–749.

  • Adams, I. P., Skelton, A., Macarthur, R., Hodges, T., Hinds, H., Flint, L., et al. (2014). Carrot yellow leaf virus is associated with carrot internal necrosis. PloS One, 9(11). doi:10.1371/journal.pone.0109125.

  • Aukema, J. E., McCullough, D. G., Von Holle, B., Liebhold, A. M., Britton, K., & Frankel, S. J. (2010). Historical accumulation of Non-indigenous forest pests in the continental United States. Bioscience, 60, 886–897.

    Article  Google Scholar 

  • Barker, I., Brownlie, J., Peckham, C., Pickett, J., Stewart, W., Waage, J., et al. (2006). Foresight. Infectious diseases: preparing for the future. A vision of future detection, identification and monitoring systems. London: Office of Science and Innovation.

    Google Scholar 

  • Bebber, D. P., Ramotowski, M. A. T., & Gurr, S. J. (2013). Crop pests and pathogens move polewards in a warming world. Nature Climate Change, 3, 985–988.

    Article  Google Scholar 

  • Bebber, D. P., Holmes, T., & Gurr, S. J. (2014). The global spread of crop pests and pathogens. Global Ecology and Biogeography, 23(12), 1398–1407.

    Article  Google Scholar 

  • Bonants, P., J., M. (2014). Results of the EU project QBOL, focusing on DNA barcoding of quarantine organisms, added to an international database (Q-bank) on identification of plant quarantine pathogens and relatives. In M. L. Gullino & P. J. M. Bonants (Eds), Detection and diagnostics of plant pathogens, plant pathology in the 21st century volume 5 (pp. 119–133). Dordrecht: Springer.

  • Boonham, N. (2014). On-site testing: moving decision making from the lab to the field. In M. L. Gullino, & P. J. M. Bonants (Eds.), Detection and diagnostics of plant pathogens, plant pathology in the 21st century volume 5 (pp. 135–146). Dordrecht: Springer.

    Google Scholar 

  • Boonham, N., Kreuze, J., Winter, S., van der Vlugt, R. A. A., Bergervoet, J., Tomlinson, J. A., et al. (2014). Methods in virus diagnostics: from ELISA to next generation sequencing. Virus Research, 186, 20–31.

    Article  CAS  PubMed  Google Scholar 

  • Brasier, C. M. (1996). New horizons in Dutch elm disease control. http://www.forestry.gov.uk/pdf/New_horizons_DED.pdf/$FILE/New_horizons_DED.pdf.

  • Brasier, C. M. (2008). The biosecurity threat to the UK and global environment from international trade in plants. Plant Pathology, 57, 792–808.

    Article  Google Scholar 

  • Danks, C., & Barker, I. (2000). On-site detection of plant pathogens using lateral-flow devices. EPPO Bulletin, 30(3–4), 421–426.

    Article  Google Scholar 

  • De Boer, S. H., & Lopez, M. M. (2012). New grower-friendly methods for plant pathogen monitoring. Annual Review of Phytopathology, 50, 197–218.

    Article  PubMed  Google Scholar 

  • Defra (2013). Chalara Management Plan. https://www.gov.uk/government/publications/chalara-management-plan.

  • FAO, IFAD and WFP (2014). The State of Food Insecurity in the World 2014. Strengthening the enabling environment for food security and nutrition. Rome: FAO.

    Google Scholar 

  • Forestry Commission (2015) Chalarar dieback of ash (Hymenoscyphus fraxineus). http://www.forestry.gov.uk/ashdieback#Distribution Accessed 12 Aug 2015.

  • Hulme, P. E. (2014). An introduction to plant biosecurity: past, present and future. In G. Gordh, & S. McKirdy (Eds.), The handbook of plant biosecurity (pp. 1–25). Dordrecht: Springer.

    Chapter  Google Scholar 

  • Jones, D. R., & Baker, R. H. A. (2007). Introductions of non-native plants pathogens into Great Britain, 1970–2004. Plant Pathology, 56, 891–910.

    Article  Google Scholar 

  • Levine, J. M., & D’Antonio, C. M. (2003). Forecasting biological invasions with increasing international trade. Conservation Biology, 17(1), 322–326.

    Article  Google Scholar 

  • Liebhold, A. M., Work, T. T., McCullough, D. G., & Cavey, J. F. (2006). Airline baggage as a pathway for alien insect species entering the United States. American Entomologist, 52, 48–54.

    Article  Google Scholar 

  • MacDiarmid, R., Rodoni, B., Melcher, U., Ochoa-Corona, F., & Roossinck, M. (2013). Biosecurity implications of new technology and discovery in plant virus research. PLoS Pathogens, 9(8). doi:10.1371/journal.ppat.1003337.

  • MacLeod, A. (2015). The relationship between biosecurity surveillance and risk analysis. In F. Jarrad, S. Low-Choy, & K. Mengersen (Eds.), Biosecurity surveillance: quantitative approaches (pp. 109–122). Wallingford: CABI.

    Google Scholar 

  • Mahuku, G., Lockhart, B. E., Wanjala, B., Jones, M. W., Kimunye, J. N., Stewart, L. R., et al. (2015). Maize lethal necrosis (MLN), an emerging threat to maize-based food security in sub-Saharan Africa. Phytopathology. doi:10.1094/PHYTO-12-14-0367-FI.

    PubMed  Google Scholar 

  • Martinelli, A., Scalenghe, F., Davino, R., Panno, S., Scuderi, S., Ruisi, G., et al. (2014). Advanced methods of plant disease detection. A review. Agronomy for Sustainable Development, 35(1), 1–25.

    Article  Google Scholar 

  • Mumford, R. A., Tomlinson, J. A., Barker, I., & Boonham, N. (2006). Advances in molecular phytodiagnostics - new solutions for old problems. European Journal of Plant Pathology, 116, 1–19.

    Article  CAS  Google Scholar 

  • O’Brien, L., Marzano, M., & White, R. M. (2013). Participatory interdisciplinarity: towards the integration of disciplinary diversity with stakeholder engagement for new models of knowledge production. Science and Public Policy, 40(1), 51–61.

    Article  Google Scholar 

  • Oerke, E. C. (2006). Crop losses to pests. Journal of Agricultural Science, 144, 31–43.

    Article  Google Scholar 

  • Pluess, T., Jarošík, V., Pyšek, P., Cannon, R., Pergl, J., Breukers, A., et al. (2012). Which factors affect the success or failure of eradication campaigns against alien species? PloS One, 7(10). doi:10.1371/journal.pone.0048157.

  • Roossinck, M. J. (2010). Lifestyles of plant viruses. Philosophical Transactions of the Royal Society Series B, 365, 1899–1905.

    Article  Google Scholar 

  • Roossinck, M. J., Martin, D. P., & Roumagnac, P. (2015). Plant virus metagenomics: advances in virus discovery. Phytopathology, 105(6), 716–727.

    Article  CAS  PubMed  Google Scholar 

  • Rossi, V., Candresse, T., Jeger, M. J., Manceau, C., Urek, G., & Stancanelli, G. (2014). Diagnosis of plant pathogens and implications for plant quarantine: a risk assessment perspective. In M. L. Gullino, & P. J. M. Bonants (Eds.), Detection and diagnostics of plant pathogens, plant pathology in the 21st century volume 5 (pp. 167–193). Dordrecht: Springer.

    Google Scholar 

  • Smil, V. (2000). Feeding the world: a challenge for the twenty-first century. Cambridge: MIT Press.

    Google Scholar 

  • Strange, R. N., & Scott, P. R. (2005). Plant disease: a threat to global food security. Annual Review of Phytopathology, 43, 83–116.

    Article  CAS  PubMed  Google Scholar 

  • Straw, N.A.,·Tilbury, C., Fielding, N.J., Williams, D.T. &·Cull, T. (2015) Timing and duration of the life cycle of Asian longhorn beetle Anoplophora glabripennis (Coleoptera: Cerambycidae) in southern England: Life cycle of A. glabripennis. Agricultural and Forest Entomology (in press) doi:10.1111/afe.12120

  • Thompson, D. (2006). Plum pox virus (PPV) in Canada. EPPO Bulletin, 36, 206.

    Article  Google Scholar 

  • Thompson, M., Lyons, A., Kumarasinghe, L., Peck, D. R., Kong, G., Shattuck, S., et al. (2011). Remote microscopy: a success story in Australian and New Zealand plant biosecurity. Australian Journal of Entomology, 50(1), 1–6.

    Article  Google Scholar 

  • Tomlinson, J. A., Boonham, N., Hughes, K. J. D., Griffin, R. L., & Barker, I. (2005). On-site DNA extraction and real-time PCR for detection of phytophthora ramorum in the field. Applied and Environmental Microbiology, 71(11), 6702–6710.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Waage, J. K., Woodhall, J. W., Bishop, S. J., Smith, J. J., Jones, D. R., & Spence, N. J. (2008). Patterns of plant pest introductions in Europe and Africa. Agricultural Systems, 99(1), 1–5.

    Article  Google Scholar 

Download references

Acknowledgments

This work was supported in part by the Living with Environmental Change (LWEC) Tree Health and Plant Biosecurity Initiative Phase 2, which is funded jointly by a grant from the BBSRC, Defra, ESRC, Forestry Commission, NERC and the Scottish Government. It was also supported by funding from the Defra Future proofing Plant Health. This paper was presented at a conference sponsored by the OECD’s Co-operative Research Programme on Biological Resource Management for Sustainable Agricultural Systems whose financial support made it possible for most of the invited speakers to participate in the Conference. The opinions expressed and arguments employed in this publication are the sole responsibility of the authors and do not necessarily reflect those of the OECD or of the governments of its Member countries.

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Mumford, R.A., Macarthur, R. & Boonham, N. The role and challenges of new diagnostic technology in plant biosecurity. Food Sec. 8, 103–109 (2016). https://doi.org/10.1007/s12571-015-0533-y

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