Abstract
Infestation of cereal fields with toxigenic Fusarium species is identified as an environmental source for the mycotoxin deoxynivalenol (DON). During rain events, DON may be washed off from infested plants and enter the soil, where microbial transformation may occur. Although some studies showed DON transformation potential of soil microbial communities in liquid soil extracts, these findings can not be transferred to environmental conditions. Accordingly, microbial transformation of DON in soil has to be investigated under realistic conditions, e.g., microcosms mimicking field situations. In this study, we investigated the potential of soil microbial communities to transform DON in six different agricultural soils at two levels (0.5 and 5 µg g–1). The dissipation and the formation of transformation products were investigated in a period of 35 days and compared to a sterilized control. In addition, we measured soil respiration and applied the phospholipid-derived fatty acid (PLFA) analysis to assess whether soil microbial community characteristics are related to the microbial transformation potential. Dissipation of DON in non-sterilized soils was fast (50% dissipation within 0.6–3.7 days) compared to the sterile control where almost no dissipation was observed. Thus, dissipation was mainly attributed to microbial transformation. We verified that small amounts of DON are transformed to 3-keto-deoxynivalenol (3-keto-DON) and 3-epi-deoxynivalenol (3-epi-DON), which were not detectable after 16-day incubation, indicating further transformation processes. There was a trend towards faster transformation in soils with active and large microbial communities and low fungi-to-bacteria ratio.
Similar content being viewed by others
Introduction
The mycotoxin deoxynivalenol (DON) is often found in cereal crops (European Food Safety Authority 2013) as a consequence of the infestation with pathogenic Fusarium species. Due to the good water solubility and low affinity to natural organic matter (Schenzel et al. 2012b), DON can be easily mobilized from infested plants (Schenzel et al. 2012a) or harvest residues during rain events, being found in soil and soil leachate (Meyer-Wolfarth et al. 2021), in drainage water of fields (Schenzel et al. 2012a), and in surface waters (Schenzel et al. 2012c; Kolpin et al. 2014). However, mobilized DON will initially enter the soil, and not all rain events are heavy enough for further mobilization processes. This provides an opportunity for transformation processes of DON in soil with the potential to mitigate environmental DON levels.
Although DON is chemically stable in a wide range of physical and chemical conditions (Joint FAO/WHO Expert Committee on Food Additives 2001; Mishra et al. 2014), the dissipation of DON in soil has been reported in some studies and is therefore associated with biological transformation processes. Meyer et al. (2021) showed decreasing DON levels from up to 21 ng g–1 to background levels within 11 weeks in a field study. In other experiments, DON was incorporated to soil microcosms as part of harvest residues (10 µg g–1 in straw, 10.5 µg g–1 in maize stubbles) and levels dropped by 96 and 79% within 2 and 6 weeks, respectively (Abid et al. 2021; Meyer-Wolfarth et al. 2021). However, these experiments included various edaphic groups, i.e., earthworms, nematodes, springtails, and soil microbial communities, and the respective contribution to disappearance is not yet fully understood.
Studies assessing the potential of various soil microbial communities indicate that the respective DON transformation potential may be rare and only individual soils are able to degrade DON. In a study by Völkl et al. (2004), 40 mixed soil cultures and 287 pure cultures from arable soils were assessed, but none of the microbial cultures metabolized DON under the applied experimental conditions. Similarly, only one out of five composite samples (165 agricultural soils) was observed to transform DON in a study by Islam et al. (2012). One reason may be that single genera or species of the soil microbial community are responsible for DON transformation but can not survive the isolation process and laboratory conditions in aqueous mineral media (Ward et al. 1990; Völkl et al. 2004). Therefore, the results obtained under these laboratory conditions can not be transferred to natural soil conditions, and in situ microbial transformation in soil remains unexplored.
Other studies confirmed the DON transformation potential of some soil microbial communities and identified different transformation paths in solution. Islam et al. (2012) showed 100% de-epoxidation of 50 µg mL–1 DON by a mixed soil microbial community culture after 6 days in mineral salt + bacto peptone medium. In a follow-up study, the same culture de-epoxidized several trichothecenes under aerobic and anaerobic conditions and even high levels of 500 µg mL–1 DON (Ahad et al. 2017). Another transformation path, i.e., epimerization of DON, was shown for the soil bacteria Nocardioides WSN05-2 (Ikunaga et al. 2011), Devosia insulae A16 (Wang et al. 2019), and a mixed culture of soil bacteria (Zhai et al. 2019), which were able to transform various concentrations of DON (20–1000 µg mL–1) to 3-epi-DON within 2–10 days when DON was the only carbon source. The soil bacterium Deviosa mutans 17-2-E-8 was able to epimerize up to 89% of 100 µg mL–1 DON within 3 days even when DON was not the only carbon source (He et al. 2016). However, these studies mainly focus on isolating bacterial strains from soil with the aim to use them in cereal food processing, and no conclusions regarding transformation processes in soil can be drawn.
Contrary to studies, where DON transformation was investigated using the cultivable part of the soil microbial community, we focused on the transformation of available DON by the whole soil microbiome in soil microcosms. In the first line, we aim to assess the potential of soils for mitigating DON occurrence in the environment measured as the dissipation of dissolved DON in soil. Furthermore, we assess the contribution of biotic (microbial) and abiotic transformation to the observed dissipation of DON. We hypothesize that soil microbial communities are able to degrade DON in soil and that the transformation depends on general soil microbial community characteristics, i.e., activity and biomass as it has been shown in studies assessing herbicide dissipation (Anderson 1984). Since soil bacteria are more efficient users of mobile dissolved carbon sources (Marschner and Kalbitz 2003; Kramer and Gleixner 2008), we hypothesize that bacteria are the main contributors to DON transformation, and therefore, not only the size (biomass) of the community, but also the soil microbial community structure influences the transformation. Finally, we expect that the transformation of DON will result in the formation of 3-keto-DON and 3-epi-DON as these compounds were found in studies using microbial communities and species isolated from soil (Yao and Long 2020). To test our hypotheses, we incubated six soils spiked with DON (0.5 and 5 µg g–1) for up to 35 days and measured the decline in DON levels. Sterile soil samples were included to asses abiotic transformation. We measured glucose-induced respiration and applied the phospholipid-derived fatty acid (PLFA) analysis to assess the soil microbial activity and structure (biomass: total PLFA; Structure: total bacteria, total fungi, fungi-to-bacteria ratio), respectively.
Materials and methods
Chemicals
Methanol and formic acid (LC-MS grade) for mobile phase, soil extraction, and standard preparation were supplied by Fisher Scientific (Schwerte, Germany). Ultrapure water was used throughout the whole study (Milli-Q-purification system, 18.2 M\(\Omega\) c\(^{-1}\)m, EASYpure II, Millipore, Bedford, MA, USA). Stock solution of DON was prepared by dilution of 5 mg DON (Sigma-Aldrich, St. Louis, USA) in 20 mL of water. DON stock solution was used for the preparation of spiking solutions at 25 and 250 µg mL–1 and for calibration. Isotopically labeled standard 13C15-deoxynivalenol dissolved in acetonitrile was supplied by BiopureTM, Romer Labs (Butzbach, Germany), and diluted to 250 ng mL–1 in methanol. 3-keto-DON standard for calibration was supplied by Triplebond (Guelph, Canada). No reference standard was available for 3-epi-DON, but one peak was putatively assigned to 3-epi-DON based on the shorter retention time which has been reported in other studies (Vanhoutte et al. 2017; Zhai et al. 2019) and based on the mass signals fitting with the signals of DON.
Glucose for soil respiration measurement as well as methanol, chloroform, and acetone for PLFA extraction were purchased by Carl Roth (Karlsruhe, Germany). A 0.25 M methanolic trimethylsulfonium hydroxide solution for PLFA transesterification was purchased by Sigma-Aldrich (St. Louis, USA). The quantitative 37-component fatty acid methyl ester mix (Supelco, Bellefonte, PA, USA) was spiked with additional components i15:0, i17:0, 16:1\(\omega\)5c, and 18:1\(\omega\)7c (Larodan AB, Solna, Sweden) and used for quantification. A 250 µg mL-1 solution of 1,2-dimyristoyl-sn-glycero-3-phosphocholine (Sigma-Aldrich, St. Louis, USA) in methanol was used as an internal standard for PLFA analysis.
Soil selection and pre-incubation
Soils were selected in order to cover a range of soil physicochemical properties, namely texture, pH, and total carbon content (TC) (Table 1) and land management. Three soils (JA-cornfield, F03P02, and F07P01) were sampled from maize fields. F03P02 and F07P01 were exposed to DON in the past as shown in a previous study (Kenngott et al. 2022). Three soils (Refesol03G, Refesol04A, Refesol05G) were supplied by Fraunhofer IME (Schmallenberg, Germany; order codes 03-G, 04-A, 05-G), further referred to as reference soils. The reference soils are recognized by the German Federal Environmental Agency for application in biological tests and for determination of decomposition and sorption processes. The soils Refesol03G and Refesol05G originate from grassland, and Refesol04A was sampled from arable land. No cereal plants have been grown on the reference soils since September 2019.
F03P02 and F07P01 were sampled in September 2019 from corn field topsoil (0–5 cm soil depth) as described in Kenngott et al. (2022) and stored at \(-\)20 \({}^{\circ }\text {C}\) until analysis. Prior to analysis, soils were unfrozen, sieved (2 mm), homogenized, and stored in darkness at 21 \({}^{\circ }\text {C}\) for 4 and 1 week for pre-incubation, respectively. JA-cornfield soil was sampled in August 2021 from a corn field topsoil (0–20 cm soil depth), homogenized, and stored outdoor in a plastic barrel with air exchange. A fresh subsample was taken and sieved (2 mm) the day before soil sample pre-incubation. Reference soils were sampled 1 week prior to soil sample pre-incubation.
The targeted water holding capacity (WHC) during the experiment was 50%. Therefore, all soils were initially adjusted to 40% WHC for pre-incubation and the remaining 10% were added in the subsequent DON spiking step. Moistened soils were homogenized and aliquots equivalent to 2.5 g soil dry weight were weighed in 15 mL plastic centrifuge tubes. Screw caps were loosely placed on each tube to reduce evaporation and protect the soil from dust or contamination but allowing air exchange. All tubes were pre-incubated in darkness at 21 \({}^{\circ }\text {C}\) for 4 days to allow microbial communities to adapt to the experimental conditions. Sterile references were produced by autoclaving tubes with soil aliquots for 1 h at 121 \({}^{\circ }\text {C}\). Autoclaving was repeated 3 days later to eliminate colonies from intact spores. Aliquots of sterilized soils (1 g) were placed on agar medium plates to verify the absence of colony-forming units and confirm sterile conditions after autoclaving. Screw caps of sterilized samples were tightly closed after autoclaving to avoid microbial contamination.
DON dissipation experiment
After the pre-incubation, soils in tubes were spiked with 50 \(\upmu\)L of DON spiking solutions (25 and 250 µg mL–1) to reach levels of 0.5 and 5 µg g–1 soil dry weight. Tubes spiked with pure water served as control. Additional water was added to adjust the WHC to 50%. Screw caps were again loosely placed on each tube to reduce evaporation and protect the soil from dust or contamination but allowing air exchange. The tubes were then further incubated in darkness at 21 \({}^{\circ }\text {C}\) until sampling.
Sterile soils in tubes were spiked with 50 \(\upmu\)L of filtered (0.2 \(\upmu\)m) high level DON spiking solution (250 µg mL–1), and WHC was adjusted to 50% using autoclaved water. Screw caps of sterilized tubes were tightly closed during incubation. To ensure air exchange, the caps were perforated with a sharp cannula, and the hole was immediately covered with medical tape to avoid microbial contamination.
After 0, 1, 2, 4, 7, 11, 16, and 35 days of incubation, three tubes of each soil at each spiking level (3 replicates × 6 soils × 2 levels × 8 sampling times = 288 samples) were sampled from the incubator and frozen at \(-\)20 \({}^{\circ }\text {C}\) until further processing. At the same time, one control sample was taken and stored likewise (1 replicate × 6 soils × 1 level × 8 sampling times = 48 samples). Since no degradation was expected in sterile soil, three sterilized tubes of each soil were taken less frequently after 1, 7, 16, and 35 days (3 replicate × 6 soils × 1 level × 4 sampling times = 72 sterile samples) and stored at \(-\)20 \({}^{\circ }\text {C}\).
Extraction and measurement of DON and DON transformation products
After freeze drying to constant weight at \(-\)40 \({}^{\circ }\text {C}\), the samples were mixed with 5 mL of 10% methanolic water solution for 30 min at 180 rpm in an orbital shaker. After 15 min in an ultrasonic bath, samples were centrifuged for 15 min at 2190 g. Supernatands were filtered through 0.2 \(\upmu\)m PET syringe filters, and aliquots of 90 \(\upmu\)L were mixed with 10 \(\upmu\)L of internal standard solution.
Measurement system was a liquid chromatography high-resolution mass spectrometry Thermo Scientific® equipped with a quaternary Accela® pump, an Exactive® Orbitrap MS detector (Thermo Fisher Scientific, Waltham, USA) and a Hypersil GOLD™ C18 column with dimensions 100 × 2.1 mm and 1.9 \(\upmu\)m particle size (Thermo Fisher Scientific, Waltham, USA). Mobile phase consisted of methanol (Solvent A) and water (Solvent B) each conditioned with 0.1% formic acid. Gradient program with constant flow rate (0.2 mL min\(^{-1}\)) was as follows: 0–2 min 19% Solvent A; 2–6 min 19–100% Solvent A; 6–11 min 100% Solvent A; 11–12 min 100–19% Solvent A; 12–15 min 19% Solvent A. Injection volume was 10 \(\upmu\)L. Electron spray ionization was performed in negative mode at a capillary temperature of 275 \({}^{\circ }\text {C}\). Electronic settings were as follows: spray voltage 4 kV, capillary voltage 25 V, tube lens voltage 75 V, and skimmer voltage 14 V.
The target masses of DON, 3-keto-DON, and 13C15-DON were selected as the masses with the highest signal intensity of pure compound in mobile phase. A suspicious peak with the same mass signal but a slightly shorter retention time compared to DON was putatively assigned to 3-epi-DON. The same target mass and calibration as for DON were used for 3-epi-DON detection and quantification. Target masses with respective adduct and retention time used for high-resolution mass spectrometry detection are shown in Table 2, and example chromatograms are presented in the Appendix (Figs. A1 and A2). All targets were measured in negative mode as the formic acid adduct.
Soil microbial parameters
Glucose-induced respiration was measured using the CarbOBot system (CarbOBot, prw Electronics, Berlin, Germany). The measurement system is described in detail elsewhere (Heitkötter 2018). Briefly, soil samples amended with glucose are placed in closed containers where the released CO2 is allowed to react with KOH solution. The change in electric conductivity of the KOH solution is used to calculate the released CO2 carbon (CO2-C). Empty containers were used as a temperature reference.
Subsamples of 10 g of pre-incubated soils (40% WHC, 8 days in darkness at 21 \({}^{\circ }\text {C}\)) were weighed in Petri dishes, and glucose solution (150 mg mL–1) were dripped on the soil to adjust to 50% WHC and achieve 30 mg mL–1 soil water as recommended by West and Sparling (1986). Additionally, further subsamples were similarly spiked with pure water (basal respiration). Triplicaes were used for each soil and respiration measurement (basal and glucose induced). Mean respiration, i.e., CO2-C release per time, after 6.0 ± 0.2 h was used to assess soil microbial activity.
The PLFA analysis was adapted from Kenngott et al. (2021). Subsamples of 2 g from each soil were weighed in glass culture tubes and pre-incubated as described in Section 2.3. Triplicates of each soil were spiked to 5 µg g–1 DON at 50% WHC, incubated together with the transformation experiment samples and taken 4 days after DON application. Samples were frozen and stored at \(-\)20 \({}^{\circ }\text {C}\) until further processing. Prior to the PLFA analysis, soil samples were freeze-dried to a constant weight at \(-\)40 \({}^{\circ }\text {C}\). The extraction was performed in accordance with Bligh and Dyer (1959) and White et al. (1979). Briefly, samples were spiked with 50 \(\upmu\)L of internal standard solution, and lipids were extracted with a mixture of phosphate buffer, chloroform and methanol (1.6:2:4 v/v/v). The samples were shaken for 2 h and centrifuged for 15 min at 716 g. The supernatants were transferred to a fresh glass tube and mixed with 1.6 mL of phosphate buffer and 2 mL of chloroform to allow phase separation. The upper layer was discarded, and the lower layer was dried under a gentle nitrogen stream at 30 \({}^{\circ }\text {C}\). Lipids were redissolved in 1 mL chloroform and transferred to solid-phase extraction cartridges (Chromabond Easy, Marchery-Nagel, Düren, Germany). Phospholipids were separated from the neutral and glyco lipids using 5 mL chloroform and 10 mL acetone and eluted with 6 mL methanol. The eluate was evaporated and redissolved in 0.2 mL methanol. The lipids were transesterified by mixing 20 \(\upmu\)L of sample extract with a 0.25 M methanolic trimethylsulfonium hydroxide solution (Butte 1983; Gómez-Brandón et al. 2010). The samples were analyzed by gas chromatography with a flame ionization detector (Trace GC Ultra, Thermo Fisher Scientific, Waltham, USA) equipped with a 30-m FAMEWAX column (Restek Corporation, Bellefonte, PA, USA) and a glass wool liner. A sample volume of 1 \(\upmu\)L was injected at 120 \({}^{\circ }\text {C}\) splitless. Carrier gas was He at 1.4 mL min\(^{-1}\) constant column flow. The oven program was 2.5 min at 80 \({}^{\circ }\text {C}\), with 34 \({}^{\circ }\text {C}\) min\(^{-1}\) to 170 \({}^{\circ }\text {C}\) and hold for 6 min, with 12 \({}^{\circ }\text {C}\) min\(^{-1}\) to 245 \({}^{\circ }\text {C}\) and hold for 3.5 min, with 12 \({}^{\circ }\text {C}\) min\(^{-1}\) to 250 \({}^{\circ }\text {C}\) and hold for 2 min. The following PLFAs were used as biomarkers for soil microbial community groups: i15:0, i17:0 (Gram-positive; Ratledge (1997)); 16:1\(\omega\)7, 18:1\(\omega\)9c, 18:1\(\omega\)7c (Gram-negative; Ratledge (1997)); 16:1\(\omega\)5c (arbuscular mycorrhizal fungi; Olsson et al. (1995); van Aarle and Olsson (2003)); 18:2\(\omega\)6c (Fungi; Frostegård and Bååth (1996); Kaiser et al. (2010)). The sum of all quantifiable PLFA was used as a proxy for soil microbial biomass.
Soil physicochemical parameters
Soil physicochemical parameters of reference soils were provided by the supplier. Soil pH was measured electrochemically in a 0.01 molL\(^{-1}\) CaCl2 solution (1:5 ratio, soil to solution) of field fresh soil. Soil texture was determined according to DIN 19682-2 (F03P02, F07P01, Kenngott et al. (2022)) and ASTM D422–63 (2007) (JA-cornfield). Total carbon content was measured by dry combustion in tin foils using an elemental analyzer (vario MicroCUBE, Elementar Analysensysteme GmbH, Langenselbold, Germany). Total carbon can be assumed as soil organic carbon, because of the low amount of carbonates in agricultural soils. The WHC was defined as the amount of water that is retained by the soil (g g-1) against gravity after 1 h of saturation with water.
Data evaluation
Data evaluation and presentation were performed using the software R (R Core Team 2018) including the package “data.table” and “ggplot2” (Dowle and Srinivasan 2021; Wickham 2016). Model assumptions (i.e., normality and homoscedasticity of data and linear model residuals) were evaluated with QQ and residual vs. fitted plots (Zuur et al. 2010). When linear models for calibration showed heteroscedasticity of residuals, a weighted least squares linear regression was performed. The best weighting factor for weighted least squares linear regression was selected using the function weight_select, and the regression was performed using the function calibration from the package “envalysis” (Steinmetz 2023). The limit of quantification was calculated as the standard error of ten measured replicates at a near limit of quantification concentration (0.005 µg mL–1) multiplied by 10 (Magnusson and Örnemark 2014). To correct for matrix effects, the peak of DON was divided by the peak area of the isotopically labeled internal standard for each measurement. Simple first-order models were fitted on the residual levels using the function nls from the package “minpack.lm” (Elzhov et al. 2022). The fitted models were used to estimate the time when 50% of the initially applied level disappeared (DT50).
Prior to the statistical evaluation of spiking level and microbial community effects, residual levels were set relative to the spiking level to account for different orders of magnitude in spiking levels, further referred to as relative residual DON levels. Additionally, values were rank transformed to achieve normal distribution. The difference in relative residual DON levels was tested via the Wilcoxon rank sum test.
The effect of predictor variable “microbial respiration” on relative residual DON levels was tested via linear mixed effect models using the function lmer from the package “lmerTest” (Kuznetsova et al. 2017). The effect of the predictor variables “soil microbial biomass” and “fungi-to-bacteria ratio” as well as the interaction was tested accordingly in a second model. To account for the variability caused by “spiking level,” this factor was included in the models as a random effect.
Degrees of freedom and F-statistics were performed via Kenward-Roger approximation according to Halekoh and Højsgaard (2014) using the package “lmerTest” and “pbkrtest” (Kuznetsova et al. 2017; Halekoh and Højsgaard 2014).
Results
Method performance
The linearity of the analytical method was assessed as the adjusted R2 of the calibration with ten concentrations in a range of 0.005–5 µg mL–1 which was 0.99 for DON. Since the residuals of the calibration showed heteroscedasticity, a weighing factor of 1/y2 was included (Almeida et al. 2002). The limit of quantification for DON was 0.006 µg mL–1 corresponding to 0.013 µg g–1 soil dry weight. The recovery was estimated as the fraction of the initially spiked DON amount which was quantified in the first sampling (day 0, up to 4.5 h after spiking). Overall mean recovery was 91 ± 23%. The high variation was mainly attributed to fast degradation leading to lower recovery and one erroneous spiking causing high recovery, described in the next chapter.
3-keto-DON was calibrated with five concentrations in the range of 0.004–2 µg mL–1. The adjusted R2 was 0.999, and the limit of detection was 0.014 µg mL–1. No recovery experiments were performed with 3-keto-DON since the focus of this study was the degradation of DON and we only aimed to observe selected products as confirmation of microbial transformation.
A suspicious peak with the same mass signal but a slightly shorter retention time compared to DON was observed after 3 min. This peak was putatively assigned to 3-epi-DON based on the shorter retention time which has been reported in other studies (Vanhoutte et al. 2017; Zhai et al. 2019) and based on the mass signals fitting with the signals of DON. Concentrations were calculated by using DON as an external standard due to its structural similarity. Chromatograms were also scanned for expected target masses of de-epoxy-DON (279.1232 [M]– negative mode and 281.1389 [M]+ positive mode) as it is another known DON transformation product but without any result.
Dissipation of DON in function of time, spiking level, and soil type
In sterile soils, DON levels were constant over 35 days in most of the sterilized soils, but decreased by 21 ± 3% and 22 ± 6% in Refesol03G and Refesol04A within 35 days, respectively (Fig. 1c). Contrary to that, a fast dissipation of DON was observed in all non-sterilized soils and spiking levels (Fig. 1a and b). A considerably high initial DON level in JA-cornfield high spiking level was attributed to a spiking error where the volume of the spiking solution (50 \(\upmu\)L) was mixed up with the volume to adjust the WHC (75 \(\upmu\)L). Accordingly, the start level of the high spiking level of JA-cornfield was set to 7.5 µg g–1 prior to further evaluation. Within 4 days, almost all soil mean DON levels fell below 50% of the initially applied level, which is reflected in DT50 values between 0.57–1.87 days and 0.82–3.68 days for the low and high spiking level, respectively. Dissipation times estimated with simple first-order kinetic models (Table B1) were generally higher in the high spiking level compared to the low spiking level (Fig. 2).
DON levels appeared to increase in some soils of the high and low spiking levels after 10 days. For example, the mean DON level in F03P02 at day 7 was 0.07 ± 0.02 µg g–1 but 0.1 ± 0.2 µg g–1 at day 35 (see Fig. 1b). These seemingly higher levels are attributed to individual samples, which is also seen in the higher variation. However, no such increase was found in control samples that were not spiked with DON, and the levels in the low spiking level were usually below the limit of quantification after the seventh day. We therefore exclude within soil production of DON and interpret the values as variability between samples, potentially caused by the variability of the soil microbial community.
The slowest dissipation was observed in Refesol04A, irrespective of spiking level, while the fastest dissipation was observed in Refesol03G. The level in the first sampling of Refesol03G low spiking level was even below half of the initially spiked level.
Formation of microbial transformation products in soil: 3-keto-DON and 3-epi-DON
Degradation products of DON above respective limit of quantification were only found in the high spiking levels (Fig. 3). Levels of both transformation products rapidly increased within 4 days to 40 ng g–1 3-keto-DON and 100 ng g–1 3-epi-DON. Peak levels of 3-keto-DON were reached within 2 days and fell below the limit of quantification until the 7th day after DON application. Levels of 3-keto-DON in Refesol04A and Refesol05G were always below the limit of quantification.
Compared to 3-keto-DON, build-up of 3-epi-DON peak levels appeared slightly time-displaced, and quantifiable levels of 3-epi-DON were found up to 16 days after DON application. The initial build-up of DON transformation products in Refesol03G was fast followed by a fast decrease. The soils F03P02, F07P01, and JA-cornfield reached higher levels that were also detectable for a longer time. The levels of 3-epi-DON in Refesol04A and Refesol05G increased slower, and the levels were generally lower compared to the other soils.
Relation of soil microbiology and DON residual levels
Soil respiration rate, measured as the release of CO2-C, varied between soils from 1.5 ± 0.2 ng h–1 g–1 soil in Refesol04A to 12 ± 2 ng h–1 g–1 soil in Refesol03G (Table 3). Similarly, the soil microbial biomass (total PLFA) was highly variable with the lowest content in F03P02 (4 ± 1 nmol g–1) and the highest in Refesol03G (22 ± 2 nmol g–1). Fractions of bacteria and fungi were less variable with 60–91% and 3–10%, respectively.
The microbial parameters were related to the residual DON levels at day 4, where also the highest mean level of transformation products was measured, indicative for microbial transformation activity. The relative residual level in the high spiking level after 4 days was significantly greater compared to the low spiking level (one-sided Wilcoxon rank sum test: W = 294, p < 0.01).
The linear mixed effect model showed a significant effect of microbial respiration on residual level (numerator/denominator DF = 1/33, F value = 16.316, p value < 0.01), visible in a trend towards lower residual level with increasing microbial respiration (Fig. 4). The second linear mixed effect model including “fungi-to-bacteria ratio” and “soil microbial biomass” indicated significant effects of both factors with a trend towards ranked residual DON levels decreasing with “soil microbial biomass” and increasing with “fungi-to-bacteria ratio” (Table 4). Additionally, there was a significant interaction of both factors.
Discussion
Dissipation of DON in agricultural soils
Compared to sterile soil samples, DON levels in non-sterilized samples clearly decreased with time. Within 24 h, an overall mean of 50 ± 20% of the initially applied DON level disappeared and only trace levels persisted for more than 10 days. We therefore attribute the decreasing DON levels to microbially determined processes, i.e., microbial transformation.
Although only 2.5 g soil dry weight were used in each sample, dissipation of DON was observed in all non-sterilized samples indicating that DON-transforming microorganisms were well distributed within the homogenized soil. However, we observed some variability in DON levels within individual sampling times particularly in the low spiking level. Besides the variability caused by the extraction and measurement method, this variability may also have biological reasons. Soil aggregates containing hot spots of microbial activity or diversity (Upton et al. 2019) may have a great influence on the DON transformation in the individual samples. However, the observed outliers were accepted as the variability of biological systems and included in the data evaluation where they did not obviously affect the observed trends.
The transformation in non-sterilized soils observed here was faster compared to studies, where DON was incorporated with plant material (Abid et al. 2021; Meyer-Wolfarth et al. 2021), most likely because DON dissolved in soil solution has a higher availability to soil microorganisms. Therefore, DON appears to be quickly degraded only when it is washed off from plants or released from plant material. When DON was applied as a part of plant material (i.e., straw or maize stubbles), DON was still detected several weeks after application (Abid et al. 2021; Meyer-Wolfarth et al. 2021). Soil fauna may play an important role in this process as indicated by Abid et al. (2021) where DON degradation was faster when DON-containing straw was mixed with soil and when earthworms were present. Similarly, Meyer-Wolfarth et al. (2021) showed faster DON dissipation in the presence of springtails and earthworms. They suggest that the microbial community may also indirectly contribute to the dissipation of DON in plant material by increasing the palatability of plant material for earthworms and springtails. The dissipation of DON in the low spiking level was clearly faster compared to the high spiking level as seen in the relative residual DON levels and the estimated DT50 values. This suggests that the transformation of DON in soil is level-dependent which contradicts the simple first-order kinetic. Therefore, simple first-order kinetic may not be suitable for DON dissipation modeling in soils, and DT50 values have to be interpreted carefully. Bekins et al. (1998) showed that degradation of organic pollutants at high levels may be better modeled by zero-order kinetics, and in fact, the dissipation of the high DON spiking level appeared to be linear in some soils (Fig. 1, e.g., JA-cornfield, Refesol04A). However, the intention behind the high spiking level was not to estimate dissipation times but to confirm microbial degradation via the occurrence of specific transformation products. The spiking level was set about three orders of magnitude above levels observed in natural soil samples (e.g., 2–28 ng g–1 reported in Muñoz et al. (2015, 2017)), and therefore, the low spiking level dissipation times may have greater practical relevance. In order to keep comparability of DT50 values, we only applied simple first-order models for value estimation.
Most of the soils in this study had similar DT50 values (Fig. 2) and residual levels within the respective spiking concentrations, which also indicates a similar DON transformation potential of soils independent of the physicochemical properties. However, two soils deviated particularly within the first 10 days: DON transformation in Refesol03G appeared to be faster compared to all other soils, while transformation in Refesol04A appeared to be slower. The effects of temperature, pH, and oxic state on the DON transformation potential of biological systems have already been shown (Ahad et al. 2017; Islam et al. 2012; Meyer-Wolfarth et al. 2021) but do not apply in this study since parameters were similar for both soils. However, the difference between Refesol03G and Refesol04A in DON transformation is reflected in the formation of transformation products (Fig. 3) and, interestingly, most of the soil microbial parameters (Table 3).
In the sterilized control, four out of six soils showed a constant DON level throughout the experiment. The transformation of DON via exoenzymes has already been demonstrated earlier by Shima et al. (1997). Considering the high stability of DON under various physical and chemical conditions (Feizollahi and Roopesh 2022), it seems most likely that exoenzymes persisted in the sterilization process and caused a slight disappearance of DON as observed in soils in this study. However, neither 3-epi-DON nor 3-keto-DON was observed in sterile samples, potentially because the transformation product levels were below the detection limit. Alternatively, factions of DON may be bound to soil organic matter, but this would be contradictory to previous studies confirming the low affinity of DON to soil organic matter (Schenzel et al. 2012b). Considering the fast dissipation of DON in non-sterilized soils, abiotic processes appear to be of less relevance compared to microbial transformation processes.
The role of soil microbiology in degradation processes
Our study confirms, that one microbial transformation path of DON in soil is via the formation of 3-keto-DON and 3-epi-DON. This has been observed in DON detoxification experiments with soil microbial communities and strains in artificial medium (Yao and Long 2020), but never in situ. Ahad et al. (2017) and Islam et al. (2012) applied DON to a soil microbial culture in soil extract medium, but observed no de-epoxidation activity, while the same cultures in mineral salt media were able to de-epoxidize DON. Expected target masses of de-epoxidized DON were not found in this study although aerobic de-epoxidation by microorganisms from crop fields was confirmed in incubation studies (Islam et al. 2012). Therefore, under the conditions of this study, de-epoxidation may be interpreted as a non-relevant detoxification pathway compared to the bacterial epimerization of DON. Hassan et al. (2017) showed that the enzymatic epimerization of DON proceeds through the formation of 3-keto-DON as an intermediate. Similarly, we observed time-displaced maximum levels of 3-keto-DON prior to 3-epi-DON.
Hassan et al. (2017) also reported an accumulation of transformation products, which was not observed here. The sum of transformation products was never exceeding 3.5% of the initially applied DON level and both products were not detectable after 16 days. This suggests that further transformation paths occur in soil leading to unknown products, mineralization, or microbial incorporation as a carbon source (Zhai et al. 2019; Venkatesh and Keller 2019; Sato et al. 2012).
Interestingly, the soils sampled from corn fields (F03P02, F07P01, JA-cornfield) showed similar transformation product levels over time. Additionally, the slowest transformation and lowest levels of transformation products were observed in the soil sampled from arable land (Refesol04A). The sample size of six soils taken from three different land managements does not allow conclusions about priming effects of land management on DON transformation potential of soils. However, our results indicate that there may be differences based on land management and provide useful information about the optimal sampling time interval (1–4 days) after application, to assess such effects in further studies using larger sample sizes.
Dissipation of DON was observed in all investigated soils. Even in soils which were frozen between field sampling and pre-incubation, i.e., F03P02 and F07P01, DON levels dropped by over 90% within less than 10 days. Although the soils in the sampling area are regularly frozen during winter and freezing at \(-\)20 \({}^{\circ }\text {C}\) may not have changed the microbial biomass and respiration (Stenberg et al. 1998), some microbial strains may have been affected by the storage. However, these soils were included in this study because of the previous crop culture (maize) and presence of DON as proven in a previous study (Kenngott et al. 2022). At least in these soils, the potential of soil microbial communities to transform DON seems not to be affected by the storage of samples indicating that DON transformation is a more resilient property of the community. This is contrary to studies where only a few soil microbial communities extracted from various soils were able to degrade DON in artificial media (Völkl et al. 2004; Islam et al. 2012). These contrasting findings may be explained by the fact that many soil microbial species are specialized to soils and can not be cultivated under laboratory conditions or in artificial media (Ward et al. 1990; Völkl et al. 2004; Hengstmann et al. 1999). Therefore, the cultivable microbial community of soil extracts may have lost the microbial strains bearing the DON transformation potential. Our results indicate, that the ability to degrade DON is much more common in soil microbial communities than could be expected from soil extract studies.
There was a significant trend towards lower residual levels, i.e., faster DON transformation, in soils with high microbial respiration indicative of a high microbial activity. This was particularly pronounced in Refesol03G and Refesol04A, where an eight-fold difference in respiration and a four-fold difference in DT50 were observed. Additionally, there was a trend towards faster transformation of DON in soils with greater microbial biomass and lower fungi-to-bacteria ratio. However, the interaction of both factors indicates that this has to be interpreted carefully and that the transformation of DON may be accelerated by greater microbial biomass, when the fraction of fungi is increased. The observation of a positive relation between soil microbial biomass and transformation is in line with Anderson (1984), where the same effect was observed for herbicide degradation in a soil with altered microbial biomasses. Our results indicate that the ability to degrade DON is distributed among several species within the soil microbial community and a greater microbial biomass would consequently have a greater reactive surface and degrade a larger fraction of dissolved DON. Additionally, transformation of DON was more often observed for bacterial strains than fungi (Yao and Long 2020). Although this may be biased by the experimental designs used in these studies, it indicates that bacteria may have a greater contribution to the transformation potential of soil microbial communities. This corresponds to the finding of this study which shows a trend towards faster transformation with decreasing fungi-to-bacteria ratio.
Soils may generally contribute to DON detoxification via microbial transformation to 3-keto-DON and 3-epi-DON. Further unknown transformation products and additional biogeochemical pathways, i.e., mineralization should be investigated in further studies. The transformation rate observed in this study was fast, i.e., hours to days. This may also explain the low number of positive maize field soil samples (5 out of 64) found in Kenngott et al. (2022), where samples were taken at the time of harvest, but not after rain events when DON may be detected. However, the fast dissipation observed here raises the question of how elevated environmental concentrations in soil leachate and surface waters can be observed (Schenzel et al. 2012a, c; Kolpin et al. 2014). One explanation could be that DON transport through soil was too fast during intense rain events or that the main route of rainwater was via surface runoff rather than soil infiltration. It is also possible that other factors, which have not been included in this study, e.g., different temperature (Meyer-Wolfarth et al. 2021) or soil moisture, may either enhance or restrict the transformation activity. As shown in this study, very high levels of DON in soil are degraded slower, and fields with high Fusarium infestation and subsequent high DON levels may cause this emission of DON to surface waters. The occurrence of DON in the environment and the ecological effects may be investigated in future studies, and our results may help to adapt sampling strategies to detect DON levels in soils. The influence of land management on the transformation potential of soils remains unclear, but further studies with larger sample size may detect priming effects as indicated in this study. Although there is a trend towards faster DON transformation in soils with large and active soil microbial communities and a greater bacterial fraction, the transformation remained variable among the investigated soils and general soil microbial community characteristics appear not to be sufficient for explaining the transformation potential. Our results indicate that the ability to degrade DON is much more abundant in soil microbial communities than it can be expected based on previous studies. Our study provides the first insight to in situ microbial DON transformation in agricultural soils. This is relevant in the context of mycotoxins as environmental pollutants of emerging concern and shows the role of soils to mitigate environmental DON levels.
Availability of data and code
The datasets generated during and analyzed during the current study as well as the code are available from the corresponding author on reasonable request.
References
Abid M, Fayolle L, Edel-Hermann V et al (2021) Fate of deoxynivalenol (DON) and impact on the soil microflora and soil fauna. Appl Soil Ecol 162(103):898. https://doi.org/10.1016/j.apsoil.2021.103898
Ahad R, Zhou T, Lepp D et al (2017) Microbial detoxification of eleven food and feed contaminating trichothecene mycotoxins. BMC Biotechnol 17:30. https://doi.org/10.1186/s12896-017-0352-7
Almeida AM, Castel-Branco MM, Falcão AC (2002) Linear regression for calibration lines revisited: weighting schemes for bioanalytical methods. J Chromatogr B 774(2):215–222. https://doi.org/10.1016/S1570-0232(02)00244-1
Anderson JPE (1984) Herbicide degradation in soil: influence of microbial biomass. Soil Biol Biochem 16(5):483–489. https://doi.org/10.1016/0038-0717(84)90056-7
ASTM D422–63 (2007) Standard test method for particle-size analysis of soils. Technical standard, ASTM International, West Conshohocken, PA
Bekins BA, Warren E, Godsy EM (1998) A comparison of zero-order, first-order, and monod biotransformation models. Groundwater 36(2):261–268. https://doi.org/10.1111/j.1745-6584.1998.tb01091.x
Bligh EG, Dyer WJ (1959) A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37(8):911–917. https://doi.org/10.1139/o59-099
Butte W (1983) Rapid method for the determination of fatty acid profiles from fats and oils using trimethylsulphonium hydroxide for transesterification. J Chromatogr A 261:142–145. https://doi.org/10.1016/S0021-9673(01)87931-0
Dowle M, Srinivasan A (2021) Extension of ’data.frame’ [R package data.table version 1.14.0]. https://CRAN.R-project.org/package=data.table
Elzhov TV, Mullen KM, Spiess AN, et al (2022) Minpack.lm: R interface to the Levenberg-Marquardt nonlinear least-squares algorithm found in MINPACK
European Food Safety Authority (2013) Deoxynivalenol in food and feed: occurrence and exposure. EFSA J 11(10):3379. https://doi.org/10.2903/j.efsa.2013.3379
Feizollahi E, Roopesh MS (2022) Mechanisms of deoxynivalenol (DON) degradation during different treatments: a review. Crit Rev Food Sci Nutr 62(21):5903–5924. https://doi.org/10.1080/10408398.2021.1895056
Frostegård A, Bååth E (1996) The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil. Biol Fert Soils 22(1–2):59–65. https://doi.org/10.1007/BF00384433
Gómez-Brandón M, Lores M, Domínguez J (2010) A new combination of extraction and derivatization methods that reduces the complexity and preparation time in determining phospholipid fatty acids in solid environmental samples. Bioresour Technol 101(4):1348–1354. https://doi.org/10.1016/j.biortech.2009.09.047
Halekoh U, Højsgaard S (2014) A Kenward-Roger approximation and parametric bootstrap methods for tests in linear mixed models - the R package pbkrtest. J Stat Softw 59(1):1–32. https://doi.org/10.18637/jss.v059.i09
Hassan YI, He JW, Perilla N et al (2017) The enzymatic epimerization of deoxynivalenol by Devosia mutans proceeds through the formation of 3-keto- DON intermediate. Sci Rep 7(1):6929. https://doi.org/10.1038/s41598-017-07319-0
He JW, Hassan YI, Perilla N et al (2016) Bacterial epimerization as a route for deoxynivalenol detoxification: the influence of growth and environmental conditions. Front Microbiol 7:572. https://doi.org/10.3389/fmicb.2016.00572
Heitkötter J (2018) Substrate and nutrient limitation as a controlling factor for soil organic carbon persistence in subsoils / Julian Heitkötter. Bernd Marschner. Ruhr-Universität Bochum, Bochum, Ellen Kandeler; Fakultät Für Geowissenschaften, Gutachter
Hengstmann U, Chin KJ, Janssen PH et al (1999) Comparative phylogenetic assignment of environmental sequences of genes encoding 16S rRNA and numerically abundant culturable bacteria from an anoxic rice paddy soil. Appl Environ Microbiol 65(11):5050–5058. https://doi.org/10.1128/AEM.65.11.5050-5058.1999
Ikunaga Y, Sato I, Grond S, et al (2011) Nocardioides sp. strain WSN05-2, isolated from a wheat field, degrades deoxynivalenol, producing the novel intermediate 3-epi-deoxynivalenol. Appl Microbiol Biotechnol 89(2):419–427. https://doi.org/10.1007/s00253-010-2857-z
Islam R, Zhou T, Christopher Young J et al (2012) Aerobic and anaerobic de-epoxydation of mycotoxin deoxynivalenol by bacteria originating from agricultural soil. World J Microbiol Biotechnol 28(1):7–13. https://doi.org/10.1007/s11274-011-0785-4
Joint FAO/WHO Expert Committee on Food Additives (2001) Safety evaluation of certain mycotoxins in food. IPCS, Geneva, WHO Food Additives Series, World Health Organization
Kaiser C, Frank A, Wild B et al (2010) Negligible contribution from roots to soil-borne phospholipid fatty acid fungal biomarkers 18:2\(\omega\)6,9 and 18:1\(\omega\)9. Soil Biol Biochem 42(9):1650–1652. https://doi.org/10.1016/j.soilbio.2010.05.019
Kenngott KGJ, Riess K, Muñoz K et al (2021) Flood pulse irrigation of meadows shapes soil chemical and microbial parameters more than mineral fertilization. Soil Syst 5(2):24. https://doi.org/10.3390/soilsystems5020024
Kenngott KGJ, Albert J, Meyer-Wolfarth F et al (2022) Fusarium mycotoxins in maize field soils: method validation and implications for sampling strategy. Toxins 14(2):130. https://doi.org/10.3390/toxins14020130
Kolpin DW, Schenzel J, Meyer MT et al (2014) Mycotoxins: diffuse and point source contributions of natural contaminants of emerging concern to streams. Sci Total Environ 470:669–676. https://doi.org/10.1016/j.scitotenv.2013.09.062
Kramer C, Gleixner G (2008) Soil organic matter in soil depth profiles: distinct carbon preferences of microbial groups during carbon transformation. Soil Biol Biochem 40(2):425–433. https://doi.org/10.1016/j.soilbio.2007.09.016
Kuznetsova A, Brockhoff PB, Christensen RHB (2017) lmerTest package: tests in linear mixed effects models. J Stat Softw 82(1):1–26. https://doi.org/10.18637/jss.v082.i13
Magnusson B, Örnemark U (2014) Eurachem guide: the fitness for purpose of analytical methods – a laboratory guide to method validation and related topics, 2nd edn
Marschner B, Kalbitz K (2003) Controls of bioavailability and biodegradability of dissolved organic matter in soils. Geoderma 113(3–4):211–235. https://doi.org/10.1016/S0016-7061(02)00362-2
Meyer M, Diehl D, Schaumann GE et al (2021) Agricultural mulching and fungicides—impacts on fungal biomass, mycotoxin occurrence, and soil organic matter decomposition. Environ Sci Pollut Res 28(27):36535–36550. https://doi.org/10.1007/s11356-021-13280-3
Meyer-Wolfarth F, Oldenburg E, Meiners T et al (2021) Effects of temperature and soil fauna on the reduction and leaching of deoxynivalenol and zearalenone from Fusarium graminearum-infected maize stubbles. Mycotoxin Res 37(3):249–263. https://doi.org/10.1007/s12550-021-00434-y
Mishra S, Dixit S, Dwivedi PD et al (2014) Influence of temperature and pH on the degradation of deoxynivalenol (DON) in aqueous medium: comparative cytotoxicity of DON and degraded product. Food Addit Contam Part A 31(1):121–131. https://doi.org/10.1080/19440049.2013.861613
Muñoz K, Schmidt-Heydt M, Stoll D et al (2015) Effect of plastic mulching on mycotoxin occurrence and mycobiome abundance in soil samples from asparagus crops. Mycotoxin Res 31(4):191–201. https://doi.org/10.1007/s12550-015-0231-9
Muñoz K, Buchmann C, Meyer M et al (2017) Physicochemical and microbial soil quality indicators as affected by the agricultural management system in strawberry cultivation using straw or black polyethylene mulching. Appl Soil Ecol 113:36–44. https://doi.org/10.1016/j.apsoil.2017.01.014
Olsson PA, Bååth E, Jakobsen I et al (1995) The use of phospholipid and neutral lipid fatty acids to estimate biomass of arbuscular mycorrhizal fungi in soil. Mycol Res 99(5):623–629. https://doi.org/10.1016/S0953-7562(09)80723-5
R Core Team (2018) R: a language and environment for statistical computing. R Foundation for Statistical Computing
Ratledge C (1997) Microbial lipids. In: Biotechnology. John Wiley & Sons, Ltd, chap 4, p 133–197, https://doi.org/10.1002/9783527620890.ch4
Sato I, Ito M, Ishizaka M et al (2012) Thirteen novel deoxynivalenol-degrading bacteria are classified within two genera with distinct degradation mechanisms. FEMS Microbiol Lett 327(2):110–117. https://doi.org/10.1111/j.1574-6968.2011.02461.x
Schenzel J, Forrer HR, Vogelgsang S, et al (2012a) Mycotoxins in the environment: I. Production and Emission from an Agricultural Test Field. Environ Sci Technol 46(24):13,067–13,075. https://doi.org/10.1021/es301557m
Schenzel J, Goss KU, Schwarzenbach RP et al (2012b) Experimentally determined soil organic matter - water sorption coefficients for different classes of natural toxins and comparison with estimated numbers. Environ Sci Technol 46(11):6118–6126. https://doi.org/10.1021/es300361g
Schenzel J, Hungerbühler K, Bucheli TD (2012c) Mycotoxins in the environment: II. Occurrence and Origin in Swiss River Waters. Environ Sci Technol 46(24):13,076–13,084. https://doi.org/10.1021/es301558v
Shima J, Takase S, Takahashi Y et al (1997) Novel detoxification of the trichothecene mycotoxin deoxynivalenol by a soil bacterium isolated by enrichment culture. Appl Environ Microbiol 63(10):3825–3830. https://doi.org/10.1128/aem.63.10.3825-3830.1997
Steinmetz Z (2023) Envalysis: miscellaneous functions for environmental analyses
Stenberg B, Johansson M, Pell M et al (1998) Microbial biomass and activities in soil as affected by frozen and cold storage. Soil Biol Biochem 30(3):393–402. https://doi.org/10.1016/S0038-0717(97)00125-9
Upton RN et al (2019) Spatio-temporal microbial community dynamics within soil aggregates. Soil Biol Biochem 132:58–68. https://doi.org/10.1016/j.soilbio.2019.01.016
van Aarle IM, Olsson PA (2003) Fungal lipid accumulation and development of mycelial structures by two arbuscular mycorrhizal fungi. Appl Environ Microbiol 69(11):6762–6767. https://doi.org/10.1128/AEM.69.11.6762-6767.2003
Vanhoutte I, De Mets L, De Boevre M, et al (2017) Microbial detoxification of deoxynivalenol (DON), assessed via a Lemna minor L. Bioassay, through Biotransformation to 3-epi-DON and 3-epi-DOM-1. Toxins 9(2):63. https://doi.org/10.3390/toxins9020063
Venkatesh N, Keller NP (2019) Mycotoxins in conversation with bacteria and fungi. Front Microbiol 10. https://doi.org/10.3389/fmicb.2019.00403
Völkl A, Vogler B, Schollenberger M et al (2004) Microbial detoxification of mycotoxin deoxynivalenol. J Basic Microbiol 44(2):147–156. https://doi.org/10.1002/jobm.200310353
Wang G, Wang Y, Ji F et al (2019) Biodegradation of deoxynivalenol and its derivatives by Devosia insulae A16. Food Chem 276:436–442. https://doi.org/10.1016/j.foodchem.2018.10.011
Ward DM, Weller R, Bateson MM (1990) 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature 345(6270):63–65. https://doi.org/10.1038/345063a0
West AW, Sparling GP (1986) Modifications to the substrate-induced respiration method to permit measurement of microbial biomass in soils of differing water contents. J Microbiol Methods 5(3):177–189. https://doi.org/10.1016/0167-7012(86)90012-6
White DC, Davis WM, Nickels JS et al (1979) Determination of the sedimentary microbial biomass by extractible lipid phosphate. Oecologia 40(1):51–62. https://doi.org/10.1007/BF00388810
Wickham H (2016) Ggplot2: Elegant Graphics for Data Analysis, 2nd edn. Use R!, Springer International Publishing, https://doi.org/10.1007/978-3-319-24277-4
Yao Y, Long M (2020) The biological detoxification of deoxynivalenol: a review. Food Chem Toxicol 145(111):649. https://doi.org/10.1016/j.fct.2020.111649
Zhai Y, Zhong L, Gao H et al (2019) Detoxification of deoxynivalenol by a mixed culture of soil bacteria with 3-epi-deoxynivalenol as the main intermediate. Front Microbiol 10:2172. https://doi.org/10.3389/fmicb.2019.02172
Zuur AF, Ieno EN, Elphick CS (2010) A protocol for data exploration to avoid common statistical problems: data exploration. Methods Ecol Evol 1(1):3–14. https://doi.org/10.1111/j.2041-210X.2009.00001.x
Acknowledgements
The excellent technical assistance of Camilla More, Silvia Eichhöfer, and Karin Meyer is gratefully acknowledged. We thank Julius Albert and Dr. Zacharias Steinmetz for their statistical advice.
Funding
Open Access funding enabled and organized by Projekt DEAL. The project is being funded by the Federal Ministry of Food and Agriculture BMEL under the reference AflaZ 2816PROC14.
Author information
Authors and Affiliations
Contributions
Conceptualization: Kilian Kenngott, Katherine Muñoz. Methodology: Kilian Kenngott, Katherine Muñoz. Formal analysis and investigation: Kilian Kenngott. Writing—original draft preparation: Kilian Kenngott. Writing—review and editing: Katherine Muñoz. Funding acquisition: Katherine Muñoz. Supervision: Katherine Muñoz.
Corresponding author
Ethics declarations
Ethics approval
Not applicable
Consent to participate
Not applicable
Consent for publication
Not applicable
Conflict of interest
The authors declare no competing interests.
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
About this article
Cite this article
Kenngott, K.G.J., Muñoz, K. The potential of soil microbial communities to transform deoxynivalenol in agricultural soils—a soil microcosm study. Mycotoxin Res 40, 295–307 (2024). https://doi.org/10.1007/s12550-024-00526-5
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s12550-024-00526-5