Andrews, S.W., E.S. Gross, and P.H. Hutton. 2017. Modeling salt intrusion in the San Francisco Estuary prior to anthropogenic influence. Continental Shelf Research 146: 58–81. https://doi.org/10.1016/j.csr.2017.07.010.
Baker, C. 1978. A study of estuarine sedimentation in South Slough, Coos Bay, Oregon (pp. 1–118). Thesis, Portland State University.
Baptista, A.M. 1989. Salinity in Coos Bay, Oregon: review of historical data (1930–1989). Report ESE–89–001. Portland: U.S. Army Engineer District.
Barbier, E.B., S.D. Hacker, C. Kennedy, E.W. Koch, A.C. Stier, and B.R. Silliman. 2011. The value of estuarine and coastal ecosystem services. Ecological Monographs 81 (2): 169–193. https://doi.org/10.1890/10-1510.1.
Bartlett, K. 2018. Shoreline change in the Coos Bay estuary. University of Oregon senior thesis. Eugene: Department of Earth Sciences.
Borde, A.B., R.M. Thom, S. Rumrill, and L.M. Miller. 2003. Geospatial habitat change analysis in Pacific Northwest coastal estuaries. Estuaries 26 (4): 1104–1116. https://doi.org/10.1007/BF02803367.
Brophy, L. 2017. Indirect assessment of west coast USA tidal wetland loss. File geodatabase feature class, Pacific Marine and Estuarine Fish Habitat Partnership. https://www.pacificfishhabitat.org/data/tidal-wetlands-lossassessment/. Accessed 06 April 2020.
Caldera, M. 1995. South Slough adventures: life on a Southern Oregon Estuary. Coos Bay: Friends of South Slough, South Coast Printing Company.
Carignan, K.S., Taylor, L.A., Eakins, B.W., Warnken, R.R., Sazonova, T., & Schoolcraft, D.S. 2009. Digital elevation model of Port Orford, Oregon: procedures, data sources, and analysis. NOAA Tech. Mem. NESDIS NGDC-21. 38 pp.
Chant, R.J., Sommerfield, C.K., & Talke, S.A. 2018. Impact of channel deepening on tidal and gravitational circulation in a highly engineered Estuarine Basin, 1–14. https://doi.org/10.1007/s12237-018-0379-6
Chen, C., H. Liu, and R.C. Beardsley. 2003. An unstructured grid, finite-volume, three-dimensional, primitive equations ocean model: application to coastal ocean and estuaries. Journal of Physical Oceanography 20: 159–186.
Conroy, T., D.A. Sutherland, and D.K. Ralston. 2019. Estuarine exchange flow variability in a seasonal, segmented estuary. Journal of Physical Oceanography 50:595–613.
DiLorenzo, J.L., P. Huang, M.L. Thatcher, and T.O. Najarian. 1993. Dredging impacts of Delaware estuary tides, Estuarine and Coastal Modeling III: Proceedings of the 3rd International Conference, 86−104. Eatontown: ASCE.
Egbert, G.D., and S.Y. Erofeeva. 2002. Efficient inverse modeling of barotropic ocean tides. Journal of Atmospheric and Oceanic Technology 19 (2): 183–204.
Familkhalili, R., & Talke, S.A. 2016. The effect of channel deepening on tides and storm surge: a case study of Wilmington, NC, 1–10. https://doi.org/10.1002/2016GL06949410.1002/(ISSN)1944-8007.
Fischer, H.B. 1976. Mixing and dispersion in estuaries. Annual Review of Fluid Mechanics 8 (1): 107–133.
Friedrichs, C.T., and D.G. Aubrey. 1994. Tidal propagation in strongly convergent channels. Journal of Geophysical Research, Oceans 99: 3321–3336. https://doi.org/10.1029/93JC03219.
Giddings, S.N., P. MacCready, B.M. Hickey, N.S. Banas, K.A. Davis, S.A. Siedlecki, V.L. Trainer, R.M. Kudela, N.A. Pelland, and T.P. Connolly. 2014. Hindcasts of potential harmful algal bloom transport pathways on the Pacific Northwest coast. Journal of Geophysical Research, Oceans 119 (4): 2439–2461.
Groth, S., and S. Rumrill. 2009. History of Olympia oysters (Ostrea lurida Carpenter 1864) in Oregon estuaries, and a description of recovering populations in Coos Bay. Journal of Shellfish Research 28 (1): 51–58. https://doi.org/10.2983/035.028.0111.
Guerry, A.D., M.H. Ruckelshaus, K.K. Arkema, J.R. Bernhardt, G. Guannel, C.-K. Kim, M. Marsik, M. Papenfus, J.E. Toft, G. Verutes, S.A. Wood, M. Beck, F. Chan, K.M.A. Chan, G. Gelfenbaum, B.D. Gold, B.S. Halpern, W.B. Labiosa, S.E. Lester, P.S. Levin, M. McField, M.L. Pinsky, M. Plummer, S. Polasky, P. Ruggiero, D.A. Sutherland, H. Tallis, A. Day, and J. Spencer. 2012. Modeling benefits from nature: using ecosystem services to inform coastal and marine spatial planning. International Journal of Biodiversity Science, Ecosystem Services & Management. https://doi.org/10.1080/21513732.2011.647835.
Hansen, D.V., and M. Rattray Jr. 1965. Gravitational circulation in straits and estuaries. Journal of Marine Research 23: 104–122.
Hansen, D.V., and M. Rattray Jr. 1966. New dimensions in estuary classification. Limnology and Oceanography 11: 319–326.
Hickey, B.M., and N.S. Banas. 2003. Oceanography of the US Pacific Northwest coastal ocean and estuaries with application to coastal ecology. Estuaries 26 (4): 1010–1031.
Hoffnagle, J., and R. Olson. 1974. Salt marshes of the Coos Bay Estuary. Charleston: Oregon Institute of Marine Biology.
Ivy, D. 2015. A brief overview of the Coos Bay Area’s economic and cultural history. In Communities, Lands & Waterways Data Source, ed. C.E. Cornu and J. Souder. Coos Bay: Partnership for Coastal Watersheds, South Slough National Estuarine Research Reserve, and Coos Watershed Association.
Jakobsson, M., A. Armstrong, B.R. Calder, L.C. Huff, and L.A. Mayer. 2005. On the use of historical bathymetric data to determine changes in bathymetry: an analysis of errors and application to Great Bay Estuary, New Hampshire. International Hydrographic Review 6 (3): 25–41.
Jay, D.A., K. Leffler, and S. Degens. 2011. Long-term evolution of Columbia River tides. Journal of Waterway, Port, Coastal, and Ocean Engineering 137: 182–191. https://doi.org/10.1061/(ASCE)WW.1943-5460.0000082.
Johnson, G.M., D.A. Sutherland, J.J. Roering, N. Mathabane, and D.G. Gavin. 2019. Estuarine dissolved oxygen inferred from sedimentary trace metal and organic matter preservation in Coos Bay, Oregon, USA. Estuaries and Coasts 42 (5): 1211–1225. https://doi.org/10.1007/s12237-019-00580-8.
Komar, P.D., J.C. Allan, and P. Ruggiero. 2011. Sea level variations along the U.S. Pacific Northwest Coast: tectonic and climate controls. Journal of Coastal Research 276: 808–823. https://doi.org/10.2112/JCOASTRES-D-10-00116.1.
Lane, A. 2004. Bathymetric evolution of the Mersey estuary, UK, 1906–1997: causes and effects. Estuarine, Coastal and Shelf Science 59 (2): 249–263. https://doi.org/10.1016/j.ecss.2003.09.003.
Lerczak, J.A., W.R. Geyer, and R.J. Chant. 2006. Mechanisms driving the time-dependent salt flux in a partially stratified estuary. Journal of Physical Oceanography 36 (12): 2296–2311.
Lotze, H. 2010. Historical reconstruction of human-induced changes in U.S. estuaries. In Oceanography and marine biology - an annual review, vol. 20103650, 2nd ed., 267–338. CRC Press. https://doi.org/10.1201/ebk1439821169-c5.
MacCready, P., and W.R. Geyer. 2010. Advances in estuarine physics. Annual Review of Marine Science 2: 35–58. https://doi.org/10.1146/annurev-marine-120308-081015.
Martínez, M.L., A. Intralawan, G. Vázquez, O. Pérez-Maqueo, P. Sutton, and R. Landgrave. 2007. The coasts of our world: ecological, economic and social importance. Ecological Economics 63 (2–3): 254–272. https://doi.org/10.1016/j.ecolecon.2006.10.022.
Meyers, S.D., A.J. Linville, and M.E. Luther. 2014. Alteration of residual circulation due to large-scale infrastructure in a coastal plain estuary. Estuaries and Coasts 37 (2): 493–507. https://doi.org/10.1007/s12237-013-9691-3.
Nichols, M.M., and M.M. Howard-Strobel. 1991. Evolution of an urban estuarine harbor: Norfolk, Virginia. Journal of Coastal Research 7 (3): 745–757.
Nidzieko, N.J., and D.K. Ralston. 2012. Tidal asymmetry and velocity skew over tidal flats and shallow channels within a macrotidal river delta. Journal of Geophysical Research 117 (C3): 1–17. https://doi.org/10.1029/2011JC007384.
NOAA (National Oceanic and Atmospheric Administration). (2018). Relative Sea Level Trend 9432780 Charleston, Oregon. https://tidesandcurrents.noaa.gov/sltrends/sltrends_station.shtml?id=9432780. Revised 08 Aug, 2018. Accessed 29 Mar, 2019.
NOAA (National Oceanic and Atmospheric Administration). (2019a). Datums for 9432895, North Bend, Coos Bay OR, https://tidesandcurrents.noaa.gov/datums.html?id=9432895, accessed 28 Mar, 2019.
NOAA (National Oceanic and Atmospheric Administration). (2019b). Office of Coast Survey Historical Map & Chart Collection, https://historicalhistoricalcharts.noaa.gov, accessed 22 Mar 2019.
OCMP (Oregon Coastal Management Program). (2014). CMECS Estuarine Substrate Component v.0.4, OCMP, 2014. Vector digital data. Available at https://www.coastalatlas.net/metadata/CMECS_Substrate_Component_OCMP_2014.html. Accessed 1 Apr 2019.
Pawlowicz, R., B. Beardsley, and S. Lentz. 2002. Classical tidal harmonic analysis including error estimates in MATLAB using T_TIDE. Computers and Geosciences 28: 929–937.
Ralston, D.K., and W.R. Geyer. 2019. Response of the salinity intrusion, estuarine circulation, and stratification to channel deepening in an urbanized estuary. Journal of Geophysical Research, Oceans. https://doi.org/10.1029/2019JC015006.
Ralston, D.K., W.R. Geyer, and J.A. Lerczak. 2010. Structure, variability, and salt flux in a strongly forced salt wedge estuary. Journal of Geophysical Research, Oceans. https://doi.org/10.1029/2009JC005806..
Ralston, D.K., S. Talke, W.R. Geyer, H.A. Al-Zubaidi, and C.K. Sommerfield. 2019. Bigger tides, less flooding: effects of dredging on barotropic dynamics in a highly modified estuary. Journal of Geophysical Research, Oceans 124 (1): 196–211.
Roye, C. 1979. Natural resources of Coos Bay estuary. Estuary Inventory Report. Portland: Oregon Department of Fish and Wildlife 87 pp.
Ruggiero, P., G.A. Kaminsky, G. Gelfenbaum, and B. Voigt. 2005. Seasonal to interannual morphodynamics along a high-energy dissipative littoral cell. Journal of Coastal Research 21: 553–578.
Rumrill, S.S. 2006. The ecology of the South Slough estuary: Site profile of the South Slough National Estuarine Research Reserve. Charleston: South Slough National Estuarine Research Reserve 238 pp.
Satake, K., K.L. Wang, and B.F. Atwater. 2003. Fault slip and seismic moment of the 1700 Cascadia earthquake inferred from Japanese tsunami descriptions. Journal of Geophysical Research 108: 2523. https://doi.org/10.1029/2003JB002521.
Sutherland, D.A., and M.A. O'Neill. 2016. Hydrographic and dissolved oxygen variability in a seasonal Pacific Northwest estuary. Estuarine, Coastal and Shelf Science 172 (C): 47–59. https://doi.org/10.1016/j.ecss.2016.01.042.
Talke, S.A., H.E. de Swart, and H.M. Schuttelaars. 2009. Feedback between residual circulations and sediment distribution in highly turbid estuaries: an analytical model. Continental Shelf Research 29 (1): 119–135. https://doi.org/10.1016/j.csr.2007.09.002.
Talke, S.A., A.C. Kemp, and J. Woodruff. 2018. Relative Sea level, tides, and extreme water levels in Boston Harbor from 1825 to 2018. Journal of Geophysical Research, Oceans 123 (6): 3895–3914. https://doi.org/10.1029/2017JC013645.
Thom, R.M., S.L. Southard, A.B. Borde, and P. Stoltz. 2008. Light requirements for growth and survival of eelgrass (Zostera marina L.) in Pacific Northwest (USA) estuaries. Estuaries and Coasts 31 (5): 969–980.
Umlauf, L., and H. Burchard. 2003. A generic length-scale equation for geophysical turbulence models. Journal of Marine Research 61: 235–265.
van der Wal, D., K. Pye, and A. Neal. 2002. Long-term morphological change in the Ribble estuary, Northwest England. Marine Geology 189 (3–4): 249–266. https://doi.org/10.1016/S0025-3227(02)00476-0.
Van Dyke, E., and K. Wasson. 2005. Historical ecology of a Central California estuary: 150 years of habitat change. Estuaries 28 (2): 173–189. https://doi.org/10.1007/BF02732853.
van Maren, D.S., T. van Kessel, K. Cronin, and L. Sittoni. 2015. The impact of channel deepening and dredging on estuarine sediment concentration. Continental Shelf Research 95 (C): 1–14. https://doi.org/10.1016/j.csr.2014.12.010.
Winterwerp, J.C., Z.B. Wang, A. van Braeckel, G. van Holland, and F. Kösters. 2013. Man-induced regime shifts in small estuaries—II: a comparison of rivers. Ocean Dynamics 63 (11–12): 1293–1306. https://doi.org/10.1007/s10236-013-0663-8.