Allan, J.D., P.B. McIntyre, S.D.P. Smith, B.S. Halpern, G.L. Boyer, A. Buchsbaum, G.A. Burton Jr., L.M. Campbell, W.L. Chadderton, J.J.H. Ciborowski, P.J. Doran, T. Eder, D.M. Infante, L.B. Johnson, C.A. Joseph, A.L. Marino, A. Prusevich, J.G. Read, J.B. Rose, E.S. Rutherford, S.P. Sowa, and A.D. Steinman. 2013. Joint analysis of stressors and ecosystem services to enhance restoration effectiveness. Proceedings of the National Academy of Sciences of the United States of America 110: 372–377.
CAS
Article
Google Scholar
Angermeier, P.L., and M.R. Winston. 1999. Characterizing fish community diversity across Virginia landscapes: prerequisite for conservation. Ecological Applications 9: 335–349.
Article
Google Scholar
Arkema, K.K., G. Gaunnel, G. Verutes, S.A. Wood, A. Guerry, M. Ruckelshaus, P. Kareiva, M. Lacayo, and J.M. Silver. 2013. Coastal habitats shield people and property from sea-level rise and storms. Nature Climate Change 3: 913–918.
Article
Google Scholar
Balouskus, R.G., and T.E. Targett. 2012. Egg deposition by Atlantic silverside, Menidia menidia: substrate utilization and comparison of natural and altered shoreline type. Estuaries and Coasts 35: 1100–1109.
Article
Google Scholar
Balouskus, R.G., and T.E. Targett. 2016. Fish and blue crab density along a riprap-sill-hardened shoreline: copmarisons with Spartina marsh and riprap. Transactions of the American Fisheries Society 145: 766–773.
Article
Google Scholar
Barbier, E.B., S.D. Hacker, C. Kennedy, E.W. Koch, A.C. Stier, and B.R. Silliman. 2011. The value of estuarine and coastal ecosystem services. Ecological Monographs 81: 169–193.
Article
Google Scholar
Beck, M.W., K.L. Heck Jr., K.W. Able, D.L. Childers, D.B. Eggleston, B.M. Gillanders, B. Halpern, C.G. Hays, K. Hosino, T.J. Minello, R.J. Orth, P.F. Sheridan, and M.P. Weinstein. 2001. The identification, conservation, and management of estuarine and marine nurseries for fish and invertebrates. Bioscience 51: 633–641.
Article
Google Scholar
Bilkovic, D.M., and M.M. Roggero. 2008. Effects of coastal development on nearshore estuarine nekton communities. Marine Ecology Progress Series 358: 27–39.
Article
Google Scholar
Blake, R.E., J.E. Duffy, and J.P. Richardson. 2014. Patterns of seagrass community response to local shoreline development. Estuaries and Coasts 37: 1549–1561.
CAS
Article
Google Scholar
Borcard, D., P. Legendre, and P. Drapeau. 1992. Partialling out the spatial component of ecological variation. Ecology 73: 1045–1055.
Article
Google Scholar
Boynton, W.R., J.D. Hagy, and D.L. Breitburg. 2001. Issues of scale in land-margin ecosystems. In Scaling relations in experimental ecology, ed. R.H. Gardner, W.M. Kemp, V.S. Kennedy, and J.E. Petersen, 299–330. New York: Columbia University Press.
Google Scholar
Brady, D.C., and T.E. Targett. 2013. Movement of juvenile weakfish Cynoscion regalis and spot Leiostomus xanthurus in relation to diel-cycling hypoxia in an estuarine tidal tributary. Marine Ecology Progress Series 491: 199–219.
CAS
Article
Google Scholar
Breitburg, D.L., D.W. Hondorp, L.A. Davias, and R.J. Diaz. 2009. Hypoxia, nitrogen, and fisheries: integrating effects across local and global landscapes. Annual Review of Marine Science 1: 329–349.
Article
Google Scholar
Breitburg, D.L., and G.F. Riedel. 2005. Multiple stressors in marine systems. In Marine conservation biology: the science of maintaining the Sea’s biodiversity, ed. E. Norse and L. Crowder, 167–182. Washington: Island Press.
Google Scholar
Brody, S.D., S.E. Davis III, W.E. Highfield, and S. Bernhardt. 2008. A spatio-temporal analysis of section 404 wetland permitting in Texas and Florida: thirteen years of impact along the coast. Wetlands 28: 107–116.
Article
Google Scholar
Burnham, K.P., and D.R. Anderson. 2002. Model selection and Multimodel inference: a practical information theoretic approach. New York: Spinger.
Google Scholar
Caddy, J.F. 1993. Toward a comparative evaluation of human impacts on fishery ecosystems of enclosed and semi-enclosed seas. Reviews in Fisheries Science 1: 57–95.
Article
Google Scholar
Cheek, A.O., C.A. Landry, S.L. Steele, and S. Manning. 2009. Diel hypoxia in marsh creeks impairs the reproductive capacity of estuarine fish populations. Marine Ecology Progress Series 392: 211–221.
CAS
Article
Google Scholar
Chesapeake Bay Blue Ribbon Finance Panel (2004). Saving a national treasure: Financing the clean up of the Chesapeake Bay. Available at: http://www.chesapeakebay.net/content/publications/cbp_12881.pdf.
Cloern, J.E. 2001. Our evolving conceptual model of the coastal eutrophication problem. Marine Ecology Progress Series 210: 223–253.
CAS
Article
Google Scholar
Cohen, J.S., J.C. Maerz, and B. Blossey. 2012. Traits, not origin, explain impacts of plants on larval amphibians. Ecological Applications 22: 218–228.
Article
Google Scholar
Crossett, K., Culliton, T., Wiley, P., Goodspeed, T. 2004. Population trends along the coastal United States, 1980–2008. National Oceanic and Atmospheric Administration, Silver Spring, MD, USA.
de Leiva Moreno, J.I., V.N. Agostini, J.F. Caddy, and F. Carocci. 2000. Is the pelagic-demersal ratio from fishery landings a useful proxy for nutrient availability? A preliminary data exploration for the semi-enclosed seas around Europe. ICES Journal of Marine Science 57: 1091–1102.
Article
Google Scholar
de Mutsert, K., J.H. Cowan Jr., T.E. Essington, and R. Hilborn. 2008. Reanalyses of Gulf of Mexico fisheries data: landings can be misleading in assessments of fisheries and fisheries ecosystems. Proceedings of the National Academy of Sciences of the United States of America 105: 2740–2744.
Article
Google Scholar
Dethier, M.N., W.W. Raymond, A.N. McBride, J.D. Toft, J.R. Cordell, A.S. Ogston, S.M. Heerhartz, and H.D. Berry. 2016. Multiscale impacts of armoring on Salish Sea shorelines: evidence for cumulative and threshold effects. Estuarine, Coastal and Shelf Science 175: 106–117.
Article
Google Scholar
Diaz, R.J., and R. Rosenberg. 2008. Spreading dead zones and consequences for marine ecosystems. Science 321: 926–929.
CAS
Article
Google Scholar
Everett, R.A., and G.M. Ruiz. 1993. Coarse woody debris as a refuge from predation in aquatic communities. Oecologia 93: 475–486.
CAS
Article
Google Scholar
Felker-Quinn, E., J.A. Schweitzer, and J.K. Bailey. 2013. Meta-analysis reveals evolution in invasive plant species but little support for evolution of increased competitive ability (EICA). Ecology and Evolution 3: 739–751.
Article
Google Scholar
Fisher, T.R., J.D. Hagy III, W.R. Boynton, and M.R. Williams. 2006. Cultural eutrophication in the Choptank and Patuxent estuaries of Chesapeake Bay. Limnology and Oceanography 51: 435–447.
CAS
Article
Google Scholar
Foley, J.A., R. DeFries, G.P. Asner, C. Barford, G. Bonan, S.R. Carpenter, F.S. Chapin, M.T. Coe, G.C. Daily, H.K. Gibbs, J.H. Helkowski, T. Holloway, E.A. Howard, C.J. Kucharik, C. Monfreda, J.A. Patz, I.C. Prentic, N. Ramankutty, and P.K. Snyder. 2005. Global consequences of land use. Science 309: 570–574.
CAS
Article
Google Scholar
Fry, J., G. Xian, S. Jin, J. Dewitz, C. Homer, L. Yang, C. Barnes, N. Herold, and J. Wickham. 2011. Completion of the 2006 National Land Cover Database for the conterminous United States. Photogrammetric Engineering and Remote Sensing 77: 858–864.
Google Scholar
Gedan, K.B., B.R. Silliman, and M.D. Bertness. 2009. Centuries of human-driven change in salt marsh ecosystems. Annual Review of Marine Science 1: 117–141.
Article
Google Scholar
Gittman, R.K., F.J. Fodrie, A.M. Popowich, D.A. Keller, J.F. Bruno, C.A. Currin, C.H. Peterson, and M.F. Piehler. 2015. Engineering away our natural defenses: an analysis of shoreline hardening in the US. Frontiers in Ecology and the Environment 13: 301–307.
Article
Google Scholar
Gittman, R.K., C.H. Peterson, C.A. Currin, F.J. Fodrie, M.F. Piehler, and J.F. Bruno. 2016. Living shorelines can enhance the nursery role of threatened estuarine habitats. Ecological Applications 26: 249–263.
Article
Google Scholar
Halpern, B.S., S. Walbridge, K.A. Selkoe, C.V. Kappel, F. Micheli, C. D’Agrosa, J.F. Bruno, K.S. Casey, C. Ebert, H.E. Fox, R. Fugita, D. Heinemann, H.S. Lenihan, E.M.P. Madin, M.T. Perry, E.R. Selig, M. Spalding, R. Steneck, and R. Watson. 2008. A global map of human impact on marine ecosystems. Science 319: 948–952.
CAS
Article
Google Scholar
Heck, K.L., G. Hays, and R.J. Orth. 2003. Critical evaluation of the nursery role hypothesis for seagrass meadows. Marine Ecology Progress Series 253: 123–136.
Article
Google Scholar
Henley, W.F., M.A. Patterson, R.J. Neves, and D. Lemly. 2000. Effects of sedimentation and turbidity on lotic food webs: a concise review for natural resource managers. Reviews in Fisheries Science 8: 125–139.
Article
Google Scholar
Hines, A.H., and G.M. Ruiz. 1995. Temporal variation in juvenile blue crab mortality: nearshore shallows and cannibalism in Chesapeake Bay. Bulletin of Marine Science 57: 884–901.
Google Scholar
Howarth, R.W., and R. Marino. 2006. Nitrogen as the limiting nutrient for eutrophication in coastal marine ecosystems: evolving views over three decades. Limnology and Oceanography 51: 364–376.
CAS
Article
Google Scholar
IPCC. 2007. Contribution of Working Groups I, II, and III to the fourth assessment report of the Intergovernmental Panel on Climate Change. In: Climate Change 2007: Synthesis Report, ed. R.K. Pachauri and A. Reisinger). IPCC, Geneva, Switzerland.
Jones, H.P., D.G. Hole, and E.S. Zavaleta. 2012. Harnessing nature to help people adapt to climate change. Nature Climate Change 2: 504–509.
Article
Google Scholar
Jordan, C. 2009. Biological Synopsis of Pumpkinseed (Lepomis gibbosus). Fisheries and Oceans Canada, Science Branch, Pacific Region, Pacific Biological Station.
Jordan, T.E., D.L. Correll, and D.E. Weller. 1997. Effects of agriculture on discharges of nutrients from coastal plain watersheds of Chesapeake Bay. Journal of Environmental Quality 26: 836–848.
CAS
Article
Google Scholar
Kemp, W.M., W.R. Boynton, J.E. Adolf, D.F. Boesch, W.C. Boicourt, G. Brush, J.C. Cornwell, T.R. Fisher, P.M. Gilbert, J.D. Hagy, L.W. Harding, E.D. Houde, D.G. Kimmel, W.D. Miller, R.I.E. Newell, M.R. Roman, E.M. Smith, and J.C. Stevenson. 2005. Eutrophication of Chesapeake Bay: historical trends and ecological interactions. Marine Ecology Progress Series 303: 1–29.
Article
Google Scholar
King, R.S., J.R. Beaman, D.F. Whigham, A.H. Hines, M.E. Baker, and D.E. Weller. 2004. Watershed land use is strongly linked to PCBs in white perch in Chesapeake Bay subestuaries. Environmental Science and Technology 38: 6546–6552.
CAS
Article
Google Scholar
King, R.S., A.H. Hines, F.D. Craige, and S. Grap. 2005. Regional, watershed and local correlates of blue crab and bivalve abundances in subestuaries of Chesapeake Bay, USA. Journal of Experimental Marine Biology and Ecology 319: 101–116.
Article
Google Scholar
Kornis, M.S., S. Sharma, and M.J. Vander Zanden. 2013. Invasion success and impact of an invasive fish, round goby, in Great Lakes tributaries. Diversity and Distributions 19: 184–198.
Article
Google Scholar
Laney, R. W. 1997. The relationship of submerged aquatic vegetation (SAV) ecological value to species managed by the Atlantic States Marine Fisheries Commission. In: Atlantic Coastal Submerged Aquatic Vegetation: A Review of its Ecological Role, Anthropogenic Impacts, State Regulation and Value to Atlantic Coastal Fisheries, ed. C.D. Stephan and T.E. Bigford.
Lotrich, V.A. 1975. Summer home range and movements of Fundulus heteroclitus (Pisces: Cyprinodontidae) in a tidal creek. Ecology 56: 191–198.
Article
Google Scholar
Lotze, H.K., H.S. Lenihan, B.J. Bourque, R.H. Bradbury, R.G. Cooke, M.C. Kay, S.M. Kidwell, M.X. Kirby, C.H. Peterson, and J.B.C. Jackson. 2006. Depletion, degradation, and recovery potential of estuaries and coastal seas. Science 312: 1806–1809.
CAS
Article
Google Scholar
Love, J.W., and E.B. May. 2007. Relationships between fish assemblage structure and selected environmental factors in Maryland’s coastal bays. Northeastern Naturalist 14: 251–268.
Article
Google Scholar
Masterson, J. 2008. Palaemonetes pugio species report. Smithsonian Marine Station at Fort Pierce. Available at http://www.sms.si.edu/irlspec/Palaemonetes_pugio.htm.
Miles, J.R., P.E. Russell, and D.A. Huntley. 2001. Field measurements of sediment dynamics in front of a seawall. Journal of Coastal Research 17: 195–206.
Google Scholar
Munsch, S.H., J.R. Cordell, and J.D. Toft. 2015a. Effects of shoreline engineering on shallow subtidal fish and crap communities in an urban estuary: a comparison of armored shorelines and nourished beaches. Ecological Engineering 81: 312–320.
Article
Google Scholar
Munsch, S.H., J.R. Cordell, and J.D. Toft. 2015b. Effects of seawall armoring on juvenile Pacific salmon diets in an urban estuarine embayment. Marine Ecology Progress Series 535: 213–229.
CAS
Article
Google Scholar
Murdy, E.O., R.S. Birdsong, and J.A. Musick. 1997. Fishes of Chesapeake Bay, 324. Washington: Smithsonian Institution Press.
Google Scholar
Nixon, S.W. 1995. Coastal marine eutrophication: a definition, social causes, and future concerns. Ophelia 41: 199–219.
Article
Google Scholar
North Carolina 15A NCAC 7H .0208(b)(7) (2012). Subchapter 7H – State guidelines for areas of environmental concern.
Patrick, C.J., D.E. Weller, X. Li, and M. Ryder. 2014. Effects of shoreline alteration and other stressors on submerged aquatic vegetation in subestuaries of Chesapeake Bay and the mid-Atlantic coastal bays. Estuaries and Coasts 37: 1516–1531.
CAS
Article
Google Scholar
Peterson, C.H., and M.J. Bishop. 2005. Assessing the environmental impacts of beach nourishment. Bioscience 55: 887–896.
Article
Google Scholar
Peterson, M.S., B.H. Comyns, J.R. Hendon, P.J. Bond, and G.A. Duff. 2000. Habitat use by early life-history stages of fishes and crustaceans along a changing estuarine landscape: differences between natural and altered shoreline sites. Wetlands Ecology and Management 8: 209–219.
Article
Google Scholar
Peterson, M.S., and M.R. Lowe. 2009. Implications of cumulative impacts to estuarine and marine habitat quality for fish and invertebrate resources. Reviews in Fisheries Science 17: 505–523.
Article
Google Scholar
Peterson, M.S., and M.R. Meador. 1994. Effects of salinity on freshwater fishes in coastal plain drainages in the southeastern US. Reviews in Fisheries Science 2: 95–121.
Article
Google Scholar
Pope, J. 1997. Responding to coastal erosion and flooding damages. Journal of Coastal Research 13: 704–710.
Google Scholar
Rabalais, N.N., R.E. Turner, R.J. Diax, and D. Justić. 2009. Global change and eutrophication of coastal waters. ICES Journal of Marine Science 66: 1528–1537.
Article
Google Scholar
Rahmstorf, S. 2007. A semi-empirical approach to projecting future sea-level rise. Science 315: 368–370.
CAS
Article
Google Scholar
Rozas, L.P., T.J. Minello, R.J. Zimmerman, and P. Caldwell. 2007. Nekton populations, long term wetland loss, and the effect of recent habitat restoration in Galveston Bay, Texas, USA. Marine Ecology Progress Series 344: 119–130.
Article
Google Scholar
Ruiz, G.M., A.H. Hines, and M.H. Posey. 1993. Shallow water as a refuge habitat for fish and crustaceans in nonvegetated estuaries: an example from Chesapeake Bay. Marine Ecology Progress Series 99: 1–16.
Article
Google Scholar
Runting, R.K., K.A. Wilson, and J.R. Rhodes. 2013. Does more mean less? The value of information for conservation planning under sea level rise. Global Change Biology 19: 352–363.
Article
Google Scholar
Schlacher, T.A., D.S. Schoeman, J. Dugan, M. Lastra, A. Jones, F. Scapini, and A. McLachlan. 2008. Sandy beach ecosystems: key features, sampling issues, management challengs and climate change impacts. Marine Ecology 29(Suppl. 1): 70–90.
Article
Google Scholar
Scyphers, S.B., J.S. Picou, and S.P. Powers. 2015. Participatory conservation of coastal habitats: the importance of understanding homeowner decision making to mitigate cascading shoreline degradation. Conservation Letters 8: 41–49.
Article
Google Scholar
Seitz, R.D., R.N. Lipcius, N.H. Olmstead, M.S. Seebo, and D.M. Lambert. 2006. Influence of shallow-water habitats and shoreline development on abundance, biomass, and diversity of benthic prey and predators in Chesapeake Bay. Marine Ecology Progress Series 326: 11–27.
Article
Google Scholar
Shade, A., J.G. Caporaso, J. Handelsman, R. Knight, and N. Fierer. 2013. A meta-analysis of changes in bacterial and archaeal communities with time. The ISME Journal 7: 1493–1506.
Article
Google Scholar
Sharma, S., P. Legendre, M. De Cáceres, and D. Boisclair. 2011. The role of environmental and spatial processes in structuring native and non-native fish communities across thousands of lakes. Ecography 34: 762–771.
Article
Google Scholar
Sobocinski, K.L., J.R. Cordell, and C.A. Simenstad. 2010. Effects of shoreline modifications on supratidal macroinvertebrate fauna on Puget sound, Washington beaches. Estuaries and Coasts 33: 699–711.
CAS
Article
Google Scholar
Strayer, D.L., S.E.G. Findlay, D. Miller, H.M. Malcom, D.R. Fischer, and T. Coote. 2012. Biodiversity in Hudson River shore zones: influence of shoreline type and physical structure. Aquatic Sciences 74: 597–610.
Article
Google Scholar
Toft, J.D., J.R. Cordell, C.A. Simenstad, and L.A. Stamatiou. 2007. Fish distribution, abundance, and behavior along city shoreline types in Puget sound. North American Journal of Fisheries Management 27: 465–480.
Article
Google Scholar
Tyler, R.M., D.C. Brady, and T.E. Targett. 2009. Temporal and spatial dynamics of diel cycling hypoxia in estuarine tributaries. Estuaries and Coasts 32: 123–145.
CAS
Article
Google Scholar
U.S. Environmental Protection Agency (USEPA). 2010. Chesapeake Bay total maximum daily load for nitrogen, phosphorus, and sediment. U.S. Environmental Protection Agency, Chesapeake Bay Program Office, Annapolis, Maryland, USA.
Uphoff, J.H. Jr., M. McGinty, R. Lukacovic, J. Mowrer, and B. Pyle. 2011. Impervious surface, summer dissolved oxygen, and fish distribution in Chesapeake Bay subestuaries: linking watershed development, habitat conditions, and fisheries management. N Am J Fish Manage 31: 554–566.
Article
Google Scholar
Vernberg, F.J. 1993. Salt–marsh processes: a review. Environmental Toxicology and Chemistry 12: 2167–2195.
Article
Google Scholar
Weinstein, M.P., S.Y. Litvin, and V.G. Guida. 2005. Considerations of habitat linkages, estuarine landscapes, and the trophic spectrum in wetland restoration design. Journal of Coastal Research SI40: 51–63.
Google Scholar
Weller, D.E., M.E. Baker, and T.E. Jordan. 2011. Effects of riparian buffers on nitrate concentrations in watershed discharges: new models and management implications. Ecological Applications 21: 1679–1695.
Article
Google Scholar
Wheeler, A.P., P.L. Angermeier, and A.E. Rosenberger. 2005. Impacts of new highways and subsequent landscape urbanization on stream habitat and biota. Reviews in Fisheries Science 13: 141–164.
Article
Google Scholar