Skip to main content
Log in

A predictive model for seal condition in an automated patch clamp system

  • RESEARCH
  • Published:
Journal of Micro and Bio Robotics Aims and scope Submit manuscript

Abstract

The patch clamp technique is regarded as the gold standard in electrophysiological measurements. It provides quantitative recordings for investigations and analyses of physiological activities by cellular ion channels. The gigaseal formation process is an essential factor for guaranteeing patch clamp recording conditions. This process contributes to monitoring biological ion channel currents by reducing the leakage current between pipette tip and cell membrane. While automated patch clamp systems are thriving, the implementation of criteria derived from empirical values inevitably randomizes the success of giga-ohm seals. In this paper, we addressed the seal condition between the bath current and the seal current in the gigaseal formation process. The sealing limit of the cell membrane to the micro-opening was indicated as the critical point of seal current. A predictive model based on the critical point was proposed to optimize the threshold of the seal current for gigaseal formation. It offers a systematic approach for micro-opening type implementations of high-throughput design. An automated patch clamp system with a predictive model (PM-APCS) was designed and developed to obtain whole cell voltage clamp recordings. In the development, HEK 293 cells and C2C12 cells were employed for the validation of the method. The success rate of gigaseal formation was 95.9%, which could greatly advance the existing manual or automatic methods. Overall, our findings provide important insights for understanding the seal current mechanism. The predictive model has the potential to accelerate the application of various automated systems for electrophysiology.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Algorithm 1
Fig. 7
Fig. 8
Fig. 9

Similar content being viewed by others

Data availability

Data available within the article or its supplementary materials.

References

  1. Kodandaramaiah SB, Franzesi GT, Chow BY, Boyden ES, Forest CR (2012) Automated whole-cell patch-clamp electrophysiology of neurons in vivo. Nat Methods 9(6):585–587

    Article  Google Scholar 

  2. Yajuan X, Xin L, Zhiyuan L (2012) A comparison of the performance and application differences between manual and automated patch-clamp techniques. Curr Chem Genomics 6:87

    Article  Google Scholar 

  3. Neher E, Sakmann B (1992) The patch clamp technique. Sci Am 266(3):44–51

    Article  Google Scholar 

  4. Koos K, Oláh G, Balassa T, Mihut N, Rózsa M, Ozsvár A, Tasnadi E, Barzó P, Faragó N, Puskás L (2021) Automatic deep learning-driven label-free image-guided patch clamp system. Nat Commun 12(1):1–11

    Article  Google Scholar 

  5. Suchyna TM, Markin VS, Sachs F (2009) Biophysics and structure of the patch and the gigaseal. Biophys J 97(3):738–747

    Article  Google Scholar 

  6. Yan L, Fang Q, Zhang X, Huang B (2020) Optimal pipette resistance, seal resistance, and zero-current membrane potential for loose patch or breakthrough whole-cell recording in vivo. Front Neural Circ 14:34

    Article  Google Scholar 

  7. Hamill OP, Marty A, Neher E, Sakmann B, Sigworth FJ (1981) Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches. Pflugers Arch 391(2):85–100

    Article  Google Scholar 

  8. Brüggemann A, Stoelzle S, George M, Behrends JC, Fertig N (2006) Microchip technology for automated and parallel patch-clamp recording. Small 2(7):840–846

    Article  Google Scholar 

  9. Obergrussberger A, Brüggemann A, Goetze TA, Rapedius M, Haarmann C, Rinke I, Becker N, Oka T, Ohtsuki A, Stengel T (2016) Automated patch clamp meets high-throughput screening: 384 cells recorded in parallel on a planar patch clamp module. J Lab Autom 21(6):779–793

    Article  Google Scholar 

  10. Suk H-J, Boyden ES, van Welie I (2019) Advances in the automation of whole-cell patch clamp technology. J Neurosci Methods 326:108357

    Article  Google Scholar 

  11. Obergrussberger A, Friis S, Brüggemann A, Fertig N (2021) Automated patch clamp in drug discovery: major breakthroughs and innovation in the last decade. Expert Opin Drug Discov 16(1):1–5

    Article  Google Scholar 

  12. Kodandaramaiah SB, Holst GL, Wickersham IR, Singer AC, Franzesi GT, McKinnon ML, Forest CR, Boyden ES (2016) Assembly and operation of the autopatcher for automated intracellular neural recording in vivo. Nat Protoc 11(4):634–654

    Article  Google Scholar 

  13. Desai NS, Siegel JJ, Taylor W, Chitwood RA, Johnston D (2015) MATLAB-based automated patch-clamp system for awake behaving mice. J Neurophysiol 114(2):1331–1345

    Article  Google Scholar 

  14. Stoelzle S, Obergrussberger A, Brüggemann A, Haarmann C, George M, Kettenhofen R, Fertig N (2011) State-of-the-art automated patch clamp devices: heat activation, action potentials, and high throughput in ion channel screening. Front Pharmacol 2:76

    Article  Google Scholar 

  15. Annecchino LA, Morris AR, Copeland CS, Agabi OE, Chadderton P, Schultz SR (2017) Robotic automation of in vivo two-photon targeted whole-cell patch-clamp electrophysiology. Neuron 95(5):1048–1055 (e1043)

    Article  Google Scholar 

  16. Long B, Li L, Knoblich U, Zeng H, Peng H (2015) 3D image-guided automatic pipette positioning for single cell experiments in vivo. Sci Rep 5(1):1–8

    Article  Google Scholar 

  17. Wu Q, Chubykin AA (2017) Application of automated image-guided patch clamp for the study of neurons in brain slices. J Vis Exp 125:e56010

    Google Scholar 

  18. Yang R, Tam CH, Cheung KL, Wong KC, Xi N, Yang J, Lai KWC (2014) Cell segmentation and pipette identification for automated patch clamp recording. Robot Biomimetics 1(1):1–12

    Google Scholar 

  19. Zeng H, Penniman JR, Kinose F, Kim D, Trepakova ES, Malik MG, Salata JJ (2008) Improved throughput of PatchXpress hERG assay using intracellular potassium fluoride. Assay Drug Dev Technol 6(2):235–241

    Article  Google Scholar 

  20. Lei CL, Fabbri A, Whittaker DG, Clerx M, Windley MJ, Hill AP, Mirams GR, de Boer TP (2020) A nonlinear and time-dependent leak current in the presenc e of calcium fluoride patch-clamp seal enhancer. Wellcome Open Res 5:152

    Article  Google Scholar 

  21. Rapedius M, Obergrussberger A, Humphries ES, Scholz S, Rinke-Weiss I, Goetze TA, Brinkwirth N, Rotordam MG, Strassmaier T, Randolph A, Friis S, Liutkute A, Seibertz F, Voigt N, Fertig N (2022) There is no F in APC: Using physiological fluoride-free solutions for high throughput automated patch clamp experiments. Front Mol Neurosci 15:982316

  22. Chowdhury T (1969) Fabrication of extremely fine glass micropipette electrodes. J Phys E: Sci Instrum 2(12):1087

    Article  Google Scholar 

  23. Rheinlaender J, Schäffer TE (2009) Image formation, resolution, and height measurement in scanning ion conductance microscopy. J Appl Phys 105(9):094905

    Article  Google Scholar 

  24. Scheffer L, Bitler A, Ben-Jacob E, Korenstein R (2001) Atomic force pulling: probing the local elasticity of the cell membrane. Eur Biophys J 30(2):83–90

    Article  Google Scholar 

  25. Sigüenza J, Mendez S, Nicoud F (2017) How should the optical tweezers experiment be used to characterize the red blood cell membrane mechanics? Biomech Model Mechanobiol 16(5):1645–1657

    Article  Google Scholar 

  26. Yang R, Tam CH, Cheung KL, Wong KC, Lai KW (2014) Analysis of visual-based micromanipulation for patch clamp recording. IEEE International Conference on Robotics and Biomimetics, 487–492

  27. Li L, Ouellette B, Stoy WA, Garren EJ, Daigle TL, Forest CR, Koch C, Zeng H (2017) A robot for high yield electrophysiology and morphology of single neurons in vivo. Nat Commun 8(1):1–10

    Google Scholar 

  28. Nakayama Y, Hashimoto K-I, Kawasaki H, Martinac B (2019) “Force-from-lipids” mechanosensation in Corynebacterium glutamicum. Biophys Rev 11(3):327–333

    Article  Google Scholar 

  29. Titushkin I, Cho M (2009) Regulation of cell cytoskeleton and membrane mechanics by electric field: role of linker proteins. Biophys J 96(2):717–728

    Article  Google Scholar 

  30. Lei CL, Clerx M, Whittaker DG, Gavaghan DJ, de Boer TP, Mirams GR (2020) Accounting for variability in ion current recordings using a mathematical model of artefacts in voltage-clamp experiments. Phil Trans R Soc A 378(2173):20190348

    Article  MathSciNet  MATH  Google Scholar 

  31. Stoelzle-Feix S, Horvath A, Becker N, Fabbri A, Grad C, George M, de Boer TP, Fertig N (2020) Automated patch clamp system introducing simulated Ik1 into human iPSC-cardiomycoytes using dynamic clamp. J Pharmacol Toxicol Methods 105:106744

  32. Perkins KL (2006) Cell-attached voltage-clamp and current-clamp recording and stimulation techniques in brain slices. J Neurosci Methods 154(1–2):1–18

    Article  Google Scholar 

  33. Rand RP, Burton A (1964) Mechanical properties of the red cell membrane: I. Membrane stiffness and intracellular pressure. Biophys J 4(2):115–135

    Article  Google Scholar 

  34. Kim JH, Ren Y, Ng WP, Li S, Son S, Kee Y-S, Zhang S, Zhang G, Fletcher DA, Robinson DN (2015) Mechanical tension drives cell membrane fusion. Dev Cell 32(5):561–573

    Article  Google Scholar 

Download references

Funding

This research was partially supported by the TBRS grant from the Research Grant Council of the Hong Kong Special Administrative Region Government (T42-717/20-R).

Author information

Authors and Affiliations

Authors

Contributions

S. Yang designed and performed the experiments, derived the model, and analyzed the data. K. W. C. Lai was involved in conceptual ideas and supervised the work. All authors discussed the results and contributed to the final manuscript.

Corresponding author

Correspondence to King Wai Chiu Lai.

Ethics declarations

Competing interests

The authors have no competing interests to declare that are relevant to the content of this article.

Additional information

Publisher's note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Yang, S., Lai, K.W.C. A predictive model for seal condition in an automated patch clamp system. J Micro-Bio Robot 18, 75–87 (2022). https://doi.org/10.1007/s12213-023-00160-x

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12213-023-00160-x

Keywords

Navigation