Skip to main content
Log in

Analysis of Nitrification in Agricultural Soil and Improvement of Nitrogen Circulation with Autotrophic Ammonia-Oxidizing Bacteria

  • Published:
Applied Biochemistry and Biotechnology Aims and scope Submit manuscript

Abstract

Accumulations of inorganic nitrogen (NH4 +, NO2 , and NO3 ) were analyzed to evaluate the nitrogen circulation activity in 76 agricultural soils. Accumulation of NH4 + was observed, and the reaction of NH4 + → NO2 appeared to be slower than that of NO2  → NO3 in agricultural soil. Two autotrophic and five heterotrophic ammonia-oxidizing bacteria (AOB) were isolated and identified from the soils, and the ammonia-oxidizing activities of the autotrophic AOB were 1.0 × 103–1.0 × 106 times higher than those of heterotrophic AOB. The relationship between AOB number, soil bacterial number, and ammonia-oxidizing activity was investigated with 30 agricultural soils. The ratio of autotrophic AOB number was 0.00032–0.26 % of the total soil bacterial number. The soil samples rich in autotrophic AOB (>1.0 × 104 cells/g soil) had a high nitrogen circulation activity, and additionally, the nitrogen circulation in the agricultural soil was improved by controlling the autotrophic AOBs.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  1. Kowalchuk, G. A., & Stephen, J. R. (2001). Annual Review of Microbiology, 55, 485–529.

    Article  CAS  Google Scholar 

  2. Jeanette, M. N., Javier, J. A., Yuichi, S., & Martin, G. K. (2002). Archives of Microbiology, 177, 139–149.

    Article  Google Scholar 

  3. Yamamoto, N., Otawa, K., & Nakai, Y. (2010). Microbial Ecology, 60, 807–815.

    Article  CAS  Google Scholar 

  4. Prosser, J. I. (1989). Advances in Microbial Physiology, 30, 125–181.

    Article  CAS  Google Scholar 

  5. Le Roux, X., Poly, F., Currey, P., Commeaux, C., Hai, B., Nicol, G. W., Prosser, J. I., Schloter, M., Attard, E., & Klumpp, K. (2008). The ISME Journal, 2, 221–232.

    Article  Google Scholar 

  6. Nicol, G. W., Leininger, S., Schleper, C., & Prosser, J. I. (2008). Environmental Microbiology, 10, 2966–2978.

    Article  CAS  Google Scholar 

  7. Chen, G. Y., Qiu, S. L., & Zhou, Y. Y. (2009). Research in Microbiology, 160, 173–178.

    Article  CAS  Google Scholar 

  8. Sorokin, D., Tourova, T., Schmid, M. C., Wagner, M., Koops, H. P., Kuenen, J. G., & Jetten, M. (2001). Archives of Microbiology, 176, 170–177.

    Article  CAS  Google Scholar 

  9. Kowalchuk, G. A., Stienstra, A. W., Heilig, G. H., Stephen, J. R., & Woldendorp, J. W. (2000). FEMS Microbiology Ecology, 31, 207–215.

    Article  CAS  Google Scholar 

  10. Stephen, J. R., McCaig, A. E., Smith, Z., Prosser, J. I., & Embley, T. M. (1996). Applied and Environmental Microbiology, 62, 4147–4154.

    CAS  Google Scholar 

  11. Otawa, K., Asano, R., Ohba, Y., Sasaki, T., Kawamura, E., Koyama, F., Nakamura, S., & Nakai, Y. (2006). Environmental Microbiology, 8, 1985–1996.

    Article  CAS  Google Scholar 

  12. Shimaya, C., & Hashimoto, T. (2008). Soil Science and Plant Nutrition, 54, 529–533.

    Article  Google Scholar 

  13. Koops, H. P., Böttcher, B., Möller, U. C., Pommerening-Röser, A., & Stehr, G. (1990). Archives of Microbiology, 154, 244–248.

    Article  CAS  Google Scholar 

  14. Koops, H. P., Böttcher, B., Möller, U. C., Pommerening-Röser, A., & Stehr, G. (1991). Journal of General Microbiology, 137, 1689–1699.

    Article  CAS  Google Scholar 

  15. Head, I. M., Hiorns, W. D., Embley, T. M., McCarthy, A. J., & Saunders, J. R. (1993). Journal of General Microbiology, 139, 1147–1153.

    Article  CAS  Google Scholar 

  16. Teske, A., Alm, E., Regan, J. M., Toze, S., Rittmann, B. E., & Stahl, D. A. (1994). Journal of Bacteriology, 176, 6623–6630.

    CAS  Google Scholar 

  17. Sayavedra-Soto, L. A., Hommes, N. G., Alzerreca, J. J., Arp, D. J., Norton, J. M., & Klotz, M. G. (1998). FEMS Microbiology Letters, 167, 81–88.

    Article  CAS  Google Scholar 

  18. Hommes, N. G., Sayavedra-Soto, L. A., & Arp, D. J. (1998). Journal of Bacteriology, 180, 3353–3359.

    CAS  Google Scholar 

  19. Norton, J. M., Low, J. M., & Klotz, M. G. (1996). FEMS Microbiology Letters, 139, 181–188.

    CAS  Google Scholar 

  20. Yamagata, A., Kato, J., Hirota, R., Kuroda, A., Ikeda, T., Takiguchi, N., & Ohtake, H. (1999). Journal of Bacteriology, 181, 3375–3381.

    CAS  Google Scholar 

  21. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990). Journal of Molecular Biology, 215, 403–410.

    CAS  Google Scholar 

  22. Hseu, Z. Y., & Huang, C. C. (2005). Chemosphere, 59, 447–454.

    Article  CAS  Google Scholar 

  23. Nicholas, D. J. D., & Nason, A. (1957). Methods in Enzymology, 3, 981–984.

  24. Aoshima, H., Kimura, A., Shibutani, A., Okada, C., Matsumiya, Y., & Kubo, M. (2006). Applied Microbiology and Biotechnology, 71, 875–880.

    Article  CAS  Google Scholar 

  25. Rotthauwe, J. H., Witzel, K. P., & Liesack, W. (1997). Applied and Environmental Microbiology, 63, 4704–4712.

    CAS  Google Scholar 

  26. Barraclough, D., & Puri, G. (1995). Soil Biology and Biochemistry, 27, 17–22.

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Motoki Kubo.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Matsuno, T., Horii, S., Sato, T. et al. Analysis of Nitrification in Agricultural Soil and Improvement of Nitrogen Circulation with Autotrophic Ammonia-Oxidizing Bacteria. Appl Biochem Biotechnol 169, 795–809 (2013). https://doi.org/10.1007/s12010-012-0029-6

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12010-012-0029-6

Keywords

Navigation