Abstract
The current manuscript focuses on the isolation of a potent lipase-producing mesophilic bacteria and explores the optimization of culture parameters to enhance lipase production. From a total of 83 bacterial isolates, after screening on tributyrin agar plate, rhodamine olive oil agar plate, and submerged fermentation studies, the isolate VT 1 with a lipase activity of 23.85 U/mL was selected. The potent isolate VT 1 was identified as Serratia marcescens (accession number OM757842) based on 16S rRNA gene sequencing and standard morphological and biochemical procedures. The lipase production was optimized by a statistical approach using response surface methodology after identifying the significant factors with Plackett-Burman design using Design-Expert, version 11 software. Nutrient factors- peptone, yeast extract, sodium chloride, and olive oil- were identified as the significant factors. Its optimization via central composite design of response surface methodology with Design-Expert, version 11 (olive oil: 50 mL/L, sodium chloride: 8.87 g/L, peptone: 8.15 g/L, yeast extract: 10 g/L) resulted in an enhanced experimental lipase activity of 55.95 U/mL in comparison to the predicted lipase activity of 56.858 U/mL. The study brought forth the isolation of a lipase-producing Serratia marcescens strain VT 1 and highlighted the importance of optimizing culture parameters for augmented production of lipase. The optimization via response surface methodology resulted in a 2.34-fold increase in lipase production.
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Data availability
The data analyzed during the study will be made available on reasonable request from the corresponding author.
Abbreviations
- ANOVA:
-
Analysis of variance
- BBD:
-
Box-Behnken Design
- BLASTN:
-
Basic Local Alignment Search Tool for Nucleotide sequences
- CCD:
-
Central Composite Design
- DOE:
-
Design of Experiments
- MALDI-TOF MS:
-
Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry
- MEGA11:
-
Molecular Evolutionary Genetics Analysis version 11
- MTCC:
-
Microbial Type Culture Collection and Gene Bank
- NCBI:
-
National Center for Biotechnology Information
- OFAT/OVAT:
-
One Factor/Variable at a Time
- PCR:
-
Polymerase Chain Reaction
- PBD:
-
Plackett-Burman Design
- PNPP:
-
4-Nitrophenyl palmitate/p-nitrophenyl palmitate
- PRESS:
-
Predicted Residual Sum of Squares
- rRNA:
-
Ribosomal ribonucleic acid
- ROA:
-
Rhodamine Olive Oil Agar
- RSM:
-
Response Surface Methodology
- SMVT 1:
-
Serratia marcescens VT 1
- TBA:
-
Tributyrin Agar
References
Abdullah AH, Nadhom BN, Al-Ammiri HH (2017) Isolation and identification of Serratia marcescens from Bovine Mastitis infections in Iraq and their susceptibility to antibiotics. J Entomol Zool Stud 5:489–492
Abdhul K, Sakthinarayanan K, Murugan M (2018) Isolation and identification of Serratia marcescens NASC 1 and optimization of its chitinase production. J Pharm Sci Res 10:1195–1197
Abdou MA (2003) Purification and partial characterization of psychrotrophic Serratia marcescens lipase. J Dairy Sci 86:127–132. https://doi.org/10.3168/jds.S0022-0302(03)73591-7
Abol Fotouh DM, Bayoumi RA, Hassan MA (2016) Production of thermoalkaliphilic lipase from Geobacillus thermoleovorans DA2 and application in leather industry. Enzyme Res 2016:9034364. https://doi.org/10.1155/2016/9034364
Abol-Fotouh D, AlHagar OE, Hassan MA (2021) Optimization, purification, and biochemical characterization of thermoalkaliphilic lipase from a novel Geobacillus stearothermophilus FMR12 for detergent formulations. Int J Biol Macromol 181:125–135. https://doi.org/10.1016/j.ijbiomac.2021.03.111
Adetunji AI, Olaniran AO (2018) Optimization of culture conditions for enhanced lipase production by an indigenous Bacillus aryabhattai SE3-PB using response surface methodology. Biotechnol Biotechnol Equip 32:1514–1526. https://doi.org/10.1080/13102818.2018.1514985
Adetunji AI, Olaniran AO (2021) Production strategies and biotechnological relevance of microbial lipases: a review. Braz J Microbiol 52:1257–1269. https://doi.org/10.1007/s42770-021-00503-5
Ahmad F, Wu FH (2012) High-resolution MALDI-TOF mass spectrometry of bacterial proteins using a Tris-EDTA buffer approach. Microchim Acta 176:311–316. https://doi.org/10.1007/s00604-011-0714
Ahmed HM, Mohamed SS, Moharam ME, El-bendary MA, Abd El-lateaf HA, Amin HA (2021) Statistical optimization of lipase production in solid-state fermentation by aspergillus tamarii NDA03a and application of the fermented solid as a biocatalyst for biodiesel production. Egypt Pharm J 20:23–32. https://doi.org/10.4103/epj.epj_30_20
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410. https://doi.org/10.1016/S0022-2836(05)80360-2
Aziz MMA, Elgammal EW, Ghitas RG (2020) Comparative study on modeling by neural networks and response surface methodology for better prediction and optimization of fermentation parameters: application on thermo-alkaline lipase production by Nocardiopsis sp. strain NRC/WN5. Biocatal Agric Biotechnol 25:101619. https://doi.org/10.1016/j.bcab.2020.101619
Begam SM, Pradeep SF, Pradeep VB (2012) Production, purification, characterization and applications of lipase from Serratia marcescens MBB05. Asian J Pharm Clin Res 5:0974–2441
Behera AR, Veluppal A, Dutta K (2019) Optimization of physical parameters for enhanced production of lipase from Staphylococcus hominis using response surface methodology. Environ Sci Pollut Res 26:34277–34284. https://doi.org/10.1007/s11356-019-04304-0
Castro-Ochoa L, Rodriguez-Gomez C, Valerio-Alfaro G, Oliart Ros R (2005) Screening, purification, and characterization of thermoalkalophilic lipase produced by Bacillus thermoleovorans CCR11. Enzyme Microb Technol 37:648–654. https://doi.org/10.1016/j.enzmictec.2005.06.003
Chu D, Barnes DJ (2016) The lag-phase during diauxic growth is a trade-off between fast adaptation and high growth rate. Sci rep 6:1–5. https://doi.org/10.1038/srep2519
Drummond AJ, Ashton B, Buxton S, Cheung M, Cooper A, Heled J, Kearse M, Moir R, StonesHavas S, Sturrock S, Thierer T, Wilson A (2010) Geneious v. 5.1. http://www.geneious.com. Accessed 11 Jun 2019
Duzhak AB, Panfilova ZI, Vasyunina EA (2000) Isolation and characterization of extracellular lipase preparations from wild type V-10 and mutant M-1 Serratia marcescens strains. Appl Biochem Microbiol 36:344–352. https://doi.org/10.1007/BF02738041
Eddehech A, Zarai Z, Aloui F, Smichi N, Noiriel A, Abousalhamb A, Gargouria Y (2019) Production, purification, and biochemical characterization of a thermoactive, alkaline lipase from a newly isolated Serratia sp. W3 Tunisian strain. Int J Biol Macromol 123:792–800. https://doi.org/10.1016/j.ijbiomac.2018.11.050
El-Naggar NE, El-Shweihy NM, El-Ewasy SM (2016) Identification and statistical optimization of fermentation conditions for a newly isolated extracellular cholesterol oxidase-producing Streptomyces cavourensis strain NEAE-42. BMC Microbiol 16:1–20. https://doi.org/10.1186/s12866-016-0830-4
Gupta U, Kar R (2009) Xylanase production by a thermo-tolerant Bacillus species under solid-state and submerged fermentation. Braz Arch Biol Technol 52:1363–1371. https://doi.org/10.1590/S1516-89132009000600007
Gupta B, Gupta K, Mukherjee S (2013) Lipase production by Serratia marcescens strain SN5gR isolated from the scat of lion-tailed macaque (Macaca silenus) in Silent Valley National Park, a biodiversity hotspot in India. Ann Microbiol 63:649–659. https://doi.org/10.1007/s13213-012-0515-7
Kedney GM, Strunk BK, Giaquinto ML, Wagner AJ, Pollack S, Patton AW (2007) Identification of bacteria using matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Biochem Mol Biol Educ 35:425–433. https://doi.org/10.1002/bmb.105
Kouker G, Jaeger EK (1987) Specific and sensitive plate assay for bacterial lipases. Appl Environ Microbiol 53:211–213. https://doi.org/10.1128/aem.53.1.211-213.1987
Kumar A, Parihar SS, Batra N (2012) Enrichment, isolation and optimization of lipase-producing Staphylococcus sp. from oil mill waste (oil cake). J Exp Sci 3:26–30
Lowry OH, Rosebrough NJ, Farr LA, Randall RJ (1951) Protein measurement with the Folin phenol reagent. J Biol Chem 193:265–275
Luz BD, Sarrouh B, Bicas JL, Lofrano RC (2021) Lipase production by microorganisms isolated from the Serra De Ouro Branco State Park. An Acad Bras Cienc 93(1). https://doi.org/10.1590/0001-3765202120190672
Maier T, Klepel S, Renner U, Kostrzewa M (2006) Fast and reliable MALDI-TOF MS-based microorganism identification. Nat Methods 3:1–2. https://doi.org/10.1038/nmeth870
Mehmood T, Ahmed A, Ahmad A, Ahmad MS, Sandhu MA (2018) Optimization of mixed surfactants-based β-carotene nanoemulsions using response surface methodology: an ultrasonic homogenization approach. Food Chem 253:179–184. https://doi.org/10.1016/j.foodchem.2018.01.136
Nadeem F, Mehmood T, Anwar Z, Saeed S, Bilal M, Meer B (2021) Optimization of bioprocess steps through response surface methodology for the production of immobilized lipase using Chaetomium Globosum via solid-state fermentation. Biomass Convers Biorefinery 21:1–12. https://doi.org/10.1007/s13399-021-01752-y
Nehal F, Sahnoun M, Dab A, Sebaihia M, Bejar S, Jaouadi B (2019) Production optimization, characterization, and covalent immobilization of a thermophilic Serratia rubidaea lipase isolated from an Algerian oil waste. Mol Biol Rep 46:3167–3181. https://doi.org/10.1007/s11033-019-04774-y
Ng W (2018) Conserved mass peaks in MALDI-TOF mass spectra of bacterial species at the genus and species levels. PeerJ Prepr 6:e3524v2. https://doi.org/10.7287/peerj.preprints.3524v2
Padhir AR, Modi HA (2013) Optimization of lipase production by Saccharomonospora azurea using plackett-burman design and response surface methodology. IJBTR 3:59–66
Patel R, Prajapati V, Trivedi U, Patel K (2020) Optimization of organic solvent-tolerant lipase production by Acinetobacter sp. UBT1 using deoiled castor seed cake. 3 Biotech 10:508. https://doi.org/10.1007/s13205-020-02501-0
Patel GB, Shah KR, Shindhal T, Rakholiya P, Varjani S (2021) Process parameter studies by central composite design of response surface methodology for lipase activity of newly obtained Actinomycete. Environ Technol Innov 23:101724. https://doi.org/10.1016/j.eti.2021.101724
Pereira LM, Milan TM, Tapia-Blacido DR (2021) Using response surface methodology (RSM) to optimize 2G bioethanol production: a review. Biomass Bioenergy 151:106166. https://doi.org/10.1016/j.biombioe.2021.106166
Prasad MP (2013) Production of extracellular lipase by Serratia marcescens isolated from industrial effluent. Int J Curr Res Acad Rev 1:26–32
Priyanka P, Kinsella GK, Henehan GT, Ryan BJ (2020) Isolation and characterization of a novel thermo-solvent-stable lipase from Pseudomonas brenneri and its application in biodiesel synthesis. Biocatal Agric Biotechnol 29:101806. https://doi.org/10.1016/j.bcab.2020.101806
Ramnath L, Sithole B, Govinden R (2017) Identification of lipolytic enzymes isolated from bacteria indigenous to Eucalyptus wood species for application in the pulping industry. Biotechnol Rep 15:114–124. https://doi.org/10.1016/j.btre.2017.07.004
Saha J, Chaki MG, Karmakar S, Chatterjee A, Pal A (2023) Effect of different heavy metals on lipase production by a multiple heavy metal-resistant Pseudomonas aeruginosa strain isolated from arable land. Biologia 78:2975–2985. https://doi.org/10.1007/s11756-023-01465-9
Sahoo RK, Kumari KS, Sahoo S, Das A, Gaur M, Dey S, Mohanty S, Subudhi E (2021) Bio-statistical optimization of lipase production by thermophilic Pseudomonas formosensis and its application on oral biofilm degradation. Biocatal Agric Biotechnol 33:101969. https://doi.org/10.1016/j.bcab.2021.101969
Satti SM, Abbasi AM, Marsh TL, Auras R, Hasan F, Badshah M, Farman M, Shah AA (2019) Statistical optimization of lipase production from Sphingobacterium sp. strain S2 and evaluation of enzymatic depolymerization of poly (lactic acid) at mesophilic temperature. Polym Degrad Stab 160:1–13. https://doi.org/10.1016/j.polymdegradstab.2018.11.030
Selvamohan T, Ramadas V, Sathya A (2012) Optimization of lipase enzyme activity produced by Bacillus amyloliquefaciens isolated from rock lobster Panlirus homarus. IJMER 2:4231–4234
Shahedi M, Yousefi M, Habibi Z, Mohammadi M, Ashabi MA (2019) Co-immobilization of Rhizomucor miehei lipase and Candida Antarctica lipase B and optimization of biocatalytic biodiesel production from palm oil using response surface methodology. Renew Energy 141:847–857. https://doi.org/10.1016/j.renene.2019.04.042
Sharma D, Kumbhar BK, Verma AK, Tewari L (2014) Optimization of critical growth parameters for enhancing extracellular lipase production by alkalophilic Bacillus sp. Biocatal Agric Biotechnol 3:205–211. https://doi.org/10.1016/j.bcab.2014.04.004
Smith AC, Hussey MA (2005) Gram stain protocols. Am Soc Microbiol 30:14
Sztajer H, Maliszewska I, Wieczorek J (1988) Production of exogenous lipases by bacteria, fungi and actinomycetes. Enzyme Microb Technol 10:492–497. https://doi.org/10.1016/0141-0229(88)90027-0
Tamura K, Stecher G, Kumar S (2021) MEGA11: molecular evolutionary genetics analysis version 11. Mol Biol Evol 38:3022–3027. https://doi.org/10.1093/molbev/msab120
Triyaswati D, Ilmi M (2020) Lipase-producing filamentous Fungi from non-dairy Creamer Industrial Waste. Microbiol Biotechnol Lett 48:167–178. https://doi.org/10.4014/mbl.1912.12018
Vasiee A, Behbahani BA, Yazdi FT, Moradi S (2016) Optimization of the production conditions of the lipase produced by Bacillus cereus from rice flour through Plackett-Burman Design (PBD) and response surface methodology (RSM). Microb Pathog 101:36–43. https://doi.org/10.1016/j.micpath.2016.10.020
Venil C, Sangeetha KN, Lakshmanaperumalsamy P (2009) Statistical optimization of medium components for the production of lipase by Serratia marcescens SB08. Internet J Microbiol 7(1). https://api.semanticscholar.org/CorpusID:59334795
Vivek K, Sandhia GS, Subramaniyan S (2021) A study on the culture variables affecting the production of Extracellular lipase by Serratia marcescens VT1. Res J Agric Sci 12:1773–1779
Vivek K, Sandhia GS, Subramaniyan S (2022) Extremophilic lipases for industrial applications: a general review. Biotechnol Adv 7:108002. https://doi.org/10.1016/j.biotechadv.2022.108002
Vivek K, Sandhia GS, Subramaniyan S (2023) Purification and characterization of a psychrophilic lipase from Serratia marcescens VT 1 and its application in methyl ester synthesis. Bioresour Technol Rep 22:101443. https://doi.org/10.1016/j.biteb.2023.101443
Wang K, Guo Q, Froehlich JE, Hersh HL, Zienkiewicz A, Howe GA, Benning C (2018) Two abscisic acid-responsive plastid lipase genes involved in jasmonic acid biosynthesis in Arabidopsis thaliana. Plant Cell 30:1006–1022. https://doi.org/10.1105/tpc.18.00250
Yagiz F, Kazan D, Akin AN (2007) Biodiesel production from waste oils by using lipase immobilized on hydrotalcite and zeolites. Chem Eng J 134:262–267. https://doi.org/10.1016/j.cej.2007.03.041
Zaki HN, Saeed ES (2012) Production, purification and characterization of extra cellular lipase from Serratia marcescens and its potential activity for hydrolysis of edible oils. ANJS 15:94–102. https://doi.org/10.22401/JNUS.15.1.14
Zhang Y, Shang R, Zhang J, Li J, Zhu G, Yao M, Sun J, Shen Z (2020) Isolation and identification of two Serratia marcescens strains from silkworm, Bombyx mori. Antonie Van Leeuwenhoek 113:1313–1321. https://doi.org/10.1007/s10482-020-01442-1
Acknowledgements
The author thanks the Principal and Department of Botany, University College, Palayam, Thiruvananthapuram, for providing laboratory facilities. The author is grateful to Dr. Subramaniyan S, Principal and Professor, Government Arts College, Thiruvananthapuram, and Dr. Sandhia G.S, Principal and Professor, Government College, Kariavattom, Thiruvananthapuram, for all their guidance and support during the period of work. The author is thankful to the Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram, and Microbial Type Culture Collection and Gene Bank (MTCC), Institute of Microbial Technology (IMTECH), Chandigarh, India, for the identification of microorganisms. The author is also thankful to the University of Kerala, Thiruvananthapuram, for the fund provided during work.
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The present work was funded by the University of Kerala, Palayam, Thiruvananthapuram.
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Vivek K conceptualized the study, collected the literature and methodology, performed the experiments, wrote, and edited the manuscript.
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Krishnankutty, V. Optimization of lipase production by response surface methodology from Serratia marcescens VT 1 isolated from oil contaminated soil. Biologia 79, 1471–1486 (2024). https://doi.org/10.1007/s11756-024-01614-8
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DOI: https://doi.org/10.1007/s11756-024-01614-8