Abstract
Hepcidin, a cysteine-rich antimicrobial peptide, with multiple disulfide bonds plays an important role in the defense mechanism and iron metabolism of organisms. In this study, we characterized a hepcidin from a fish under IUCN Red List i.e., tuberculated flathead, Sorsogona tuberculata. The hepcidin consists of an open reading frame of 261 base pairs encoding 86 amino acids with a signal peptide of 24 amino acids, a prodomain of 36 amino acids and a biologically active mature peptide of 26 amino acids. A conserved RX (K/R) R motif and eight conserved cysteine residues were observed. Mature peptide of St-hep is found to have a molecular weight of 2.73 kDa and the predicted three dimensional structure was similar to hepcidins from other animals, which can attain a β-hairpin-like structure with two antiparallel β-sheets. The Ramachandran plot showed 100 % of the residues in favourable and allowed regions, which confirmed the accuracy of the model. Functional characterization of St-hep was carried out using various bioinformatic resource portals. The results suggested that St-hep possesses antibacterial, antiviral, antifungal, anticancer, and immunomodulatory properties indicating its importance as a defense molecule that can be explored for therapeutic applications in aquaculture.
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Abbreviations
- St-hep:
-
Sorsogona tuberculata-hepcidin
- FORV:
-
Fishery Oceanographic Research Vessel
- CO1:
-
Cytochrome Oxidase 1
- AMP:
-
Antimicrobial peptide
- RT-PCR:
-
Reverse transcription Polymerase chain reaction
- IPTG:
-
Isopropyl β-D-1 thiogalactopyranoside
- X-Gal:
-
5-Bromo-4-chloro-3-indoyl-β-D-galactopyranoside
- BLAST:
-
Basic Local Alignment Search Tool
- SVM:
-
Support Vector Machine
- TH:
-
Tilapia hepcidin
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Acknowledgements
The authors are grateful to the Director, Centre for Marine Living Resources and Ecology (CMLRE), and Ministry of Earth Sciences (MoES), Government of India for the research grant (MoES/10-MLR/01/2012) and scientific support for the work. Authors also thank Director, National Centre for Aquatic and Animal Health (NCAAH), for scientific/ technical support of the work. The first author gratefully acknowledges DST (Department of Science and Technology), Government of India for the award of INSPIRE fellowship and the corresponding author to University grants Commission, Government of India for the BSR Faculty Grant (F.18 − 1/2011 (BSR) 2019).
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AMV carried out the experiment of the present work with support from APP, AVV, AK, and NS. The manuscript was written by AMV. RP supervised the work and corrected the manuscript.
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Veedu, A.M., Prahaladhan, A.P., Vadakkeveettil, A.V. et al. An Antimicrobial peptide hepcidin, St-hep from tuberculated flathead, Sorsogona tuberculata (Cuvier, 1829): Molecular and functional characterization. Biologia 76, 3477–3488 (2021). https://doi.org/10.1007/s11756-021-00867-x
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DOI: https://doi.org/10.1007/s11756-021-00867-x