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Cloning and sequence analysis of a mutation-type cinnamate 4-hydroxylase gene from Brassica oleracea L. var. acephala DC.

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Frontiers of Agriculture in China

Abstract

A 2431-bp full-length cinnamate 4-hydroxylase gene, BoC4H, was cloned from Brassica oleracea L. var. acephala DC.. It contains 2 introns. Its mRNA is 1715 bp, encoding a deduced 481-amino-acid polypeptide with wide homologies to C4Hs from other plants. It possesses cytochrome P450 conserved domains and motifs such as the haem-iron binding motif, the E-R-R triad, the T-containing binding pocket motif and the hinge motif necessary for optimal orientation of the enzyme. It also has most of the canonical C4H/CYP73A5-featured substrate-recognition sites (SRSs) and active site residues. However, owing to a single-base deletion at C2242 and subsequent frame shift within the 3′ coding region as compared with C4H genes from Arabidopsis thaliana and other plants, BoC4H shows a 36-aa deletion/variation at its C-terminus and the SRS6 motif together with active site residues therein are absent. Thus BoC4H may be of no function or low activity. BoC4H is a membrane protein and is probably associated with the endoplasmic reticulum. Its secondary structure is dominated by alpha helices and random coils. The Swiss-Model could not predict its tertiary structure. B. oleracea contains a C4H gene family with at least 5 members.

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References

  • Barber M S, Mitchell H J (1997). Regulation of phenylpropanoid metabolism in relation to lignin biosynthesis in plants. Int Rev Cytol, 172: 243–293

    Article  CAS  Google Scholar 

  • Bendtsen J D, Nielsen H, von Heijne G, Brunak S (2004). Improved prediction of signal peptides: SignalP 3.0. J Mol Biol, 340: 783–795

    Article  PubMed  CAS  Google Scholar 

  • Blee K, Choi JW, O’Connell A P, Jupe S C, Schuch W, Lewis N G, Bolwell G P (2001). Antisense and sense expression of cDNA coding for CYP73A15, a class II cinnamate 4-hydroxylase, leads to a delayed and reduced production of lignin in tobacco. Phytochemistry, 57: 1159–1166

    Article  PubMed  CAS  Google Scholar 

  • Blom N, Sicheritz-Ponten T, Gupta R, Gammeltoft S, Brunak S (2004). Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence. Proteomics, 4: 1633–1649

    Article  PubMed  CAS  Google Scholar 

  • Fourmann M, Barret P, Froger N, Baron C, Charlot F, Delourme R, Brunel D (2002). From Arabidopsis thaliana to Brassica napus: development of amplified consensus genetic markers (ACGM) for construction of a gene map. Theor Appl Genet, 105: 1196–1206

    Article  PubMed  CAS  Google Scholar 

  • Harakava R (2005). Genes encoding enzymes of the lignin biosynthesis pathway in Eucalyptus. Genet Mol Biol, 28(Suppl3): 601–607

    Article  CAS  Google Scholar 

  • Hasemann C A, Kurumbail R G, Boddupalli S S, Peterson J A, Deisenhofer J (1995). Structure and function of cytochromes P450: a comparative analysis of three crystal structures. Structure, 3: 41–62

    Article  PubMed  CAS  Google Scholar 

  • Hofmann K, Stoffel W (1993). TMbase: A database of membrane spanning proteins segments. Biol Chem Hoppe-Seyler, 374: 166

    Google Scholar 

  • Li B, Liang Y, Chai Y R (2006). Achievements in research on plant cinnamoyl-CoA reductase (CCR) genes. Mol Plant Breed, 4(Suppl3): 55–65 (in Chinese)

    Google Scholar 

  • Marchler-Bauer A, Bryant S H (2004). CD-Search: protein domain annotations on the fly. Nucleic Acids Res, 32: W327–W331

    Article  PubMed  CAS  Google Scholar 

  • Rechards E J (1995). Preparation and analysis of DNA. In: Short Protocols in Molecular Biology. Ausubel FM, Brent R, Kingston R E, Moore D D, Seidman J G, Smith J A, Struhl K, eds. New York: John Wiley and Sons

    Google Scholar 

  • Rupasinghe S, Baudry J, Schuler M A (2003). Common active site architecture and binding strategy of four phenylpropanoid P450s from Arabidopsis thaliana as revealed by molecular modeling. Protein Eng, 16: 721–731

    Article  PubMed  CAS  Google Scholar 

  • Schoch G A, Attias R, Le Ret M, Werck-Reichhart D (2003). Key substrate recognition residues in the active site of a plant cytochrome P450, CYP73A1. Homology guided site-directed mutagenesis. Eur J Biochem, 270: 3684–3695

    Article  PubMed  CAS  Google Scholar 

  • Seidman C E, Struhl K, Sheen J (1995). Escherichia coli, plasmids, and bacteriophages. In: Short Protocols in Molecular Biology. Ausubel F M, Brent R, Kingston R E, Moore D D, Seidman J G, Smith J A, Struhl K, eds. New York: John Wiley and Sons

    Google Scholar 

  • Sewalt V J H, Ni W, Blount J W, Jung H G, Masoud S A, Howles P A, Lamb C, Dixon R A (1997). Reduced lignin content and altered lignin composition in transgenic tobacco down-regulated in expression of L-phenylalanine ammonialyase or cinnamate 4-hydroxylase. Plant Physiol, 115: 41–50

    PubMed  CAS  Google Scholar 

  • Tusnády G E, Simon I (2001). The HMMTOP transmembrane topology prediction server. Bioinformatics, 17: 849–850

    Article  PubMed  Google Scholar 

  • Winkel-Shirley B (2001). Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology. Plant Physiol, 126: 485–493

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Jiana Li or Yourong Chai.

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Translated from Acta Horticulturae Sinica, 2007, 34(4): 915–922 [译自 : 园艺学报]

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Chen, A., Li, J., Chai, Y. et al. Cloning and sequence analysis of a mutation-type cinnamate 4-hydroxylase gene from Brassica oleracea L. var. acephala DC.. Front. Agric. China 2, 456–462 (2008). https://doi.org/10.1007/s11703-008-0047-x

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